##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545991_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 830601 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.794336871735045 31.0 28.0 31.0 16.0 33.0 2 28.523109170347738 31.0 28.0 33.0 16.0 33.0 3 28.00743196793647 31.0 26.0 33.0 16.0 34.0 4 32.01781601515047 35.0 32.0 35.0 25.0 37.0 5 33.57541346567124 35.0 33.0 35.0 28.0 37.0 6 33.41411459894703 35.0 33.0 37.0 28.0 37.0 7 34.3475037954445 35.0 35.0 37.0 31.0 37.0 8 34.717651435526804 35.0 35.0 37.0 32.0 37.0 9 36.57658370264423 39.0 37.0 39.0 32.0 39.0 10 36.301049481038426 38.0 35.0 39.0 32.0 39.0 11 36.30779881074066 38.0 35.0 39.0 32.0 39.0 12 35.12648672467286 37.0 34.0 39.0 29.0 39.0 13 35.25496839035831 37.0 34.0 39.0 29.0 39.0 14 35.904729226186824 38.0 34.0 40.0 27.0 41.0 15 36.48266135003449 38.0 35.0 40.0 31.0 41.0 16 36.09718023455305 38.0 34.0 40.0 31.0 41.0 17 35.70033987438012 37.0 34.0 40.0 30.0 41.0 18 35.33913997214066 37.0 33.0 39.0 29.0 40.0 19 34.80764289953901 37.0 33.0 39.0 27.0 40.0 20 35.33849826812152 36.0 34.0 39.0 30.0 40.0 21 35.4478744908807 36.0 34.0 39.0 30.0 40.0 22 35.81196507107504 36.0 34.0 40.0 31.0 41.0 23 36.1804500596556 37.0 35.0 40.0 31.0 41.0 24 35.73592735862346 36.0 34.0 40.0 31.0 41.0 25 35.38331400997591 36.0 34.0 40.0 30.0 41.0 26 35.54963694963045 36.0 34.0 40.0 30.0 41.0 27 35.888723948080965 37.0 35.0 40.0 31.0 41.0 28 35.828449520287116 36.0 35.0 40.0 31.0 41.0 29 35.99384421641679 37.0 35.0 40.0 31.0 41.0 30 35.667179548302975 36.0 35.0 40.0 30.0 41.0 31 34.97806407649401 36.0 34.0 40.0 29.0 41.0 32 34.974203016851654 36.0 34.0 40.0 29.0 41.0 33 34.70555657891094 36.0 34.0 40.0 25.0 41.0 34 34.32836584593566 36.0 34.0 40.0 23.0 41.0 35 34.05027805167583 36.0 34.0 40.0 21.0 41.0 36 33.67618748352097 36.0 33.0 40.0 18.0 41.0 37 33.58201109798809 36.0 33.0 40.0 18.0 41.0 38 33.440674884812324 36.0 33.0 40.0 18.0 41.0 39 33.19207658069278 36.0 33.0 40.0 18.0 41.0 40 33.041354392783056 35.0 33.0 40.0 17.0 40.0 41 32.71250455995117 35.0 32.0 39.0 15.0 40.0 42 32.920355260829204 35.0 33.0 40.0 15.0 40.0 43 32.710617974213854 35.0 32.0 39.0 15.0 40.0 44 32.463492097890565 35.0 32.0 39.0 14.0 40.0 45 32.42676206746681 35.0 32.0 39.0 15.0 40.0 46 32.27030788549496 35.0 31.0 39.0 15.0 40.0 47 32.265846056048574 35.0 32.0 39.0 15.0 40.0 48 32.28527656480067 35.0 32.0 39.0 15.0 40.0 49 32.33911107740058 35.0 32.0 39.0 15.0 40.0 50 32.43867753590472 35.0 32.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 1.0 11 3.0 12 4.0 13 13.0 14 42.0 15 90.0 16 216.0 17 485.0 18 902.0 19 1584.0 20 2540.0 21 3636.0 22 5170.0 23 7448.0 24 10474.0 25 15499.0 26 22209.0 27 25635.0 28 24531.0 29 24356.0 30 26159.0 31 32008.0 32 43335.0 33 66244.0 34 103874.0 35 76730.0 36 80582.0 37 111526.0 38 120562.0 39 24740.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.697534676697956 22.811434130226186 27.286868183399733 22.204163009676126 2 36.634798176260325 20.620731253634418 29.750505958938167 12.993964611167094 3 28.06546103363709 18.954227119880667 39.72557220614952 13.254739640332721 4 24.590507355517268 25.158048208465917 36.075805350583494 14.17563908543332 5 20.368504251740607 29.522357907105818 36.78685674589845 13.322281095255123 6 18.7752001261737 36.670796206602205 34.10891631481301 10.445087352411084 7 76.3183526145526 5.233680190608968 15.720303731876076 2.727663462962361 8 77.85663633922907 3.7357287072854475 15.422928698617024 2.9847062548684624 9 74.32533791796543 5.2246505843359206 16.778212402826387 3.671799094872267 10 44.78347606130983 23.496359864724457 21.301924750873162 10.418239323092555 11 38.7053470920454 19.61001732480457 29.271816431716314 12.412819151433721 12 34.69018216929669 20.565710852743976 31.0427028139865 13.701404163972834 13 20.503225977334484 33.54980309438587 32.014890422718004 13.932080505561636 14 15.418112908604733 34.53354859914688 35.53101910544292 14.517319386805458 15 14.70946940829592 21.8906550798759 48.32091461483913 15.078960896989047 16 17.061019671298254 18.660584323881142 46.78672431167311 17.49167169314749 17 17.692851320911 18.211993484236114 35.349223032478896 28.745932162373993 18 20.992510242583382 21.055597091744414 38.94384909240418 19.008043573268033 19 25.809263412878146 22.451935405808566 33.000321453983325 18.73847972732997 20 26.687422721619647 22.365251185587304 32.58207009141573 18.36525600137732 21 21.397879366868086 25.028503457135255 35.11686116438579 18.45675601161087 22 21.399685288122697 22.065227467821494 33.11216817701881 23.422919067037 23 18.85863368813666 26.247500303996745 32.66249378462101 22.231372223245575 24 18.643488269337503 21.98889719612666 42.00596917172024 17.3616453628156 25 17.766051329097845 23.167200617384278 39.5027215233307 19.564026530187178 26 17.184424290363243 28.78710716697909 34.3295998921263 19.698868650531363 27 17.08028283134742 29.089538779751045 35.43867633195722 18.391502056944308 28 15.988543235560757 25.61314036462754 40.99272695313393 17.405589446677766 29 16.728730160450084 22.39522947841382 40.77336771807402 20.10267264306207 30 19.186709382724075 26.094117392105236 36.79046858840767 17.92870463676302 31 26.329729918456636 23.98720926172735 31.66682919957958 18.016231620236432 32 26.964571436827068 23.566670398903927 32.06846608660476 17.400292077664243 33 25.286870591294736 24.801198168555057 30.26278562149576 19.649145618654444 34 19.823958796100655 25.311671909858042 32.75339182110304 22.11097747293827 35 19.304335053774317 25.281693617031525 33.86740444569655 21.54656688349761 36 27.565582030361146 24.552342219669853 29.183205895490133 18.698869854478865 37 20.263038450471406 29.61373752258907 30.92002056342335 19.20320346351618 38 21.523691880939225 29.800590175066006 27.87150509089202 20.80421285310275 39 21.21981553116358 28.542344639604334 29.214026951568805 21.023812877663282 40 23.80613555726516 25.29505743431563 28.81576111755223 22.083045890866977 41 19.277848208706708 23.760867131149613 30.146965871700132 26.814318788443547 42 22.475773566369412 24.050657295139303 28.074249850409522 25.399319288081763 43 21.734262299226703 25.04945214368873 28.84092362036646 24.37536193671811 44 20.511412820355382 28.050050505597753 29.58676909852023 21.851767575526637 45 18.458802722366094 32.6870543136837 26.865968136325385 21.988174827624814 46 21.62939847170904 29.397267761536526 28.208610391752476 20.764723375001957 47 21.01333853438655 26.311189126909312 29.982025063779115 22.693447274925024 48 22.05162286103677 24.498044187281256 32.05895490133048 21.39137805035149 49 21.343099755478264 23.94338557261549 32.71077207949424 22.002742592412 50 19.58930942775171 29.61674739134675 29.833939520901133 20.96000366000041 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 284.0 1 590.5 2 897.0 3 11166.0 4 21435.0 5 15231.0 6 9027.0 7 9205.0 8 9383.0 9 9768.0 10 10153.0 11 10104.5 12 10056.0 13 9492.5 14 8929.0 15 8437.0 16 7945.0 17 7568.5 18 7192.0 19 6376.5 20 5561.0 21 5514.0 22 5467.0 23 5295.0 24 5123.0 25 5679.0 26 6235.0 27 7210.5 28 8186.0 29 8716.5 30 9247.0 31 11095.5 32 12944.0 33 14170.0 34 15396.0 35 18519.0 36 21642.0 37 23861.5 38 26081.0 39 32053.5 40 38026.0 41 48346.0 42 58666.0 43 67030.5 44 75395.0 45 75402.0 46 75409.0 47 69697.0 48 63985.0 49 63287.5 50 62590.0 51 58227.5 52 53865.0 53 49343.0 54 44821.0 55 40834.5 56 36848.0 57 32968.0 58 29088.0 59 26593.0 60 24098.0 61 21697.5 62 19297.0 63 17418.5 64 15540.0 65 12823.0 66 10106.0 67 8905.0 68 7704.0 69 6565.5 70 5427.0 71 4473.5 72 3520.0 73 2911.0 74 2302.0 75 1741.0 76 1180.0 77 963.0 78 746.0 79 572.5 80 399.0 81 296.5 82 194.0 83 141.5 84 89.0 85 75.0 86 61.0 87 47.0 88 33.0 89 23.0 90 13.0 91 10.5 92 8.0 93 7.0 94 6.0 95 4.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 830601.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.6308553740462 #Duplication Level Percentage of deduplicated Percentage of total 1 74.33677570058448 22.026622497569306 2 7.529324907188243 4.462006747781973 3 3.5737561244643876 3.1768035259834835 4 2.2988543721591586 2.724680857097672 5 1.6916833832534488 2.5063012833930056 6 1.3156807872927267 2.3390848276009217 7 1.0245459479237697 2.1250720964896 8 0.8195265786514534 1.9426618821766488 9 0.6945995563263028 1.8523421096743202 >10 5.874752396458631 36.85448558166099 >50 0.7680009557185612 15.376493071765571 >100 0.071680088962103 2.8084586263596676 >500 0.0 0.0 >1k 4.096005083548743E-4 0.12658696401439642 >5k 0.0 0.0 >10k+ 4.096005083548743E-4 1.6783999284324909 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13829 1.664939001999757 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1043 0.12557172457052182 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.203947503073076E-4 0.0 0.0 0.028894740073753825 0.0 2 2.407895006146152E-4 0.0 0.0 0.10390066951520646 0.0 3 3.611842509219228E-4 0.0 0.0 0.14242698961354489 0.0 4 4.815790012292304E-4 0.0 0.0 0.22140594581513867 0.0 5 4.815790012292304E-4 0.0 0.0 0.37189938369927317 0.0 6 4.815790012292304E-4 0.0 0.0 0.5793395384787642 0.0 7 4.815790012292304E-4 0.0 0.0 0.7340467926236545 0.0 8 4.815790012292304E-4 0.0 0.0 1.1791461845097706 0.0 9 4.815790012292304E-4 0.0 0.0 1.4068126573408892 0.0 10 4.815790012292304E-4 0.0 0.0 1.7512620379700963 0.0 11 4.815790012292304E-4 0.0 0.0 1.9630364037606505 0.0 12 4.815790012292304E-4 0.0 0.0 2.153862082997733 0.0 13 6.01973751536538E-4 0.0 0.0 2.2298311704416443 0.0 14 6.01973751536538E-4 0.0 0.0 2.260652226520315 0.0 15 6.01973751536538E-4 0.0 0.0 2.295446309359127 0.0 16 8.427632521511532E-4 0.0 0.0 2.3763515815656375 0.0 17 9.631580024584608E-4 0.0 0.0 2.4786871193268487 0.0 18 9.631580024584608E-4 0.0 0.0 2.636765426480344 0.0 19 0.0010835527527657683 0.0 0.0 2.7051496446548944 0.0 20 0.001203947503073076 0.0 0.0 2.7889443908687808 0.0 21 0.001203947503073076 0.0 0.0 2.8799628221011053 0.0 22 0.001203947503073076 0.0 0.0 2.9802516491070925 0.0 23 0.001203947503073076 0.0 0.0 3.081503634115538 0.0 24 0.001203947503073076 0.0 0.0 3.1654187750797314 0.0 25 0.001203947503073076 0.0 0.0 3.2351273355076624 0.0 26 0.001203947503073076 0.0 0.0 3.2995385269220723 0.0 27 0.001203947503073076 0.0 0.0 3.374905640614447 0.0 28 0.001203947503073076 0.0 0.0 3.4500319648062066 0.0 29 0.0013243422533803836 0.0 0.0 3.5359938165256244 0.0 30 0.0013243422533803836 0.0 0.0 3.662649093848912 0.0 31 0.0013243422533803836 0.0 0.0 3.7588444993444505 0.0 32 0.0013243422533803836 0.0 0.0 3.8473346408203217 0.0 33 0.0013243422533803836 0.0 0.0 3.935463598045271 0.0 34 0.0013243422533803836 0.0 0.0 4.02672281877821 0.0 35 0.0013243422533803836 0.0 0.0 4.140375463068309 0.0 36 0.0013243422533803836 0.0 0.0 4.23645047381354 0.0 37 0.0015651317539949988 0.0 0.0 4.3319235108072345 0.0 38 0.0016855265043023064 0.0 0.0 4.446659707850099 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGTC 20 7.855218E-4 44.000004 34 ACTATCG 20 7.855218E-4 44.000004 1 GTATAAC 20 7.855218E-4 44.000004 28 TTACCGA 20 7.855218E-4 44.000004 37 TAGTACG 20 7.855218E-4 44.000004 1 TTGTACG 75 0.0 44.0 1 TACGGGT 50 2.7284841E-11 44.0 4 TCGATAG 45 4.802132E-10 44.0 1 TACTACG 35 1.4454417E-7 44.0 1 CGGTCTA 70 0.0 44.0 31 CGTTTTT 9365 0.0 42.942875 1 TACGGGA 185 0.0 42.810814 4 ACTACGG 60 3.6379788E-12 40.333332 2 GTTTTTT 10525 0.0 38.983376 2 TAAGGGA 595 0.0 38.82353 4 CGACGGT 80 0.0 38.500004 28 GACGGTC 80 0.0 38.500004 29 CGATGAT 40 4.122703E-7 38.500004 10 GGTACCT 195 0.0 38.358974 8 GGGCCTA 150 0.0 38.13333 7 >>END_MODULE