##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545988_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 705564 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.26612610620723 31.0 28.0 33.0 25.0 33.0 2 28.80820875214722 31.0 28.0 33.0 16.0 33.0 3 28.33880696860951 31.0 28.0 33.0 16.0 34.0 4 32.12993293308615 35.0 32.0 35.0 25.0 37.0 5 33.74232670601108 35.0 33.0 35.0 30.0 37.0 6 33.62356497780499 35.0 33.0 37.0 28.0 37.0 7 34.41959623790329 35.0 35.0 37.0 32.0 37.0 8 34.81977538536547 35.0 35.0 37.0 32.0 37.0 9 36.759597995362576 39.0 37.0 39.0 32.0 39.0 10 36.42631851965236 39.0 35.0 39.0 32.0 39.0 11 36.458309947786454 39.0 35.0 39.0 32.0 39.0 12 35.134191937230355 37.0 34.0 39.0 29.0 39.0 13 35.10207295156783 37.0 34.0 39.0 27.0 39.0 14 35.92761251991315 38.0 34.0 40.0 27.0 41.0 15 36.59712371946414 38.0 35.0 40.0 31.0 41.0 16 36.26986921101417 38.0 34.0 40.0 31.0 41.0 17 35.846432074198795 37.0 34.0 40.0 30.0 41.0 18 35.48783101178631 37.0 34.0 39.0 29.0 40.0 19 34.89526818261702 37.0 33.0 39.0 27.0 40.0 20 35.203091427567166 35.0 34.0 39.0 30.0 40.0 21 35.3153250449286 35.0 34.0 39.0 30.0 40.0 22 35.709367257966676 35.0 34.0 39.0 31.0 40.0 23 36.084485603006954 36.0 35.0 40.0 32.0 41.0 24 35.648778849261014 35.0 34.0 40.0 31.0 41.0 25 35.28552477167202 35.0 34.0 39.0 30.0 41.0 26 35.411364525400955 35.0 34.0 39.0 30.0 41.0 27 35.7722545367961 35.0 35.0 40.0 31.0 41.0 28 35.71883060927145 36.0 35.0 40.0 31.0 41.0 29 35.89198286760662 36.0 35.0 40.0 31.0 41.0 30 35.551514816515585 36.0 35.0 40.0 31.0 41.0 31 34.848820234592466 35.0 34.0 39.0 29.0 41.0 32 34.71911690505751 35.0 34.0 40.0 27.0 41.0 33 34.31587354230091 35.0 34.0 40.0 24.0 41.0 34 33.81638660702644 35.0 34.0 40.0 21.0 41.0 35 33.491735689462615 35.0 33.0 40.0 18.0 41.0 36 33.023518773633576 35.0 33.0 40.0 15.0 41.0 37 32.87728540571798 35.0 33.0 40.0 15.0 41.0 38 32.76843773208384 35.0 33.0 40.0 15.0 41.0 39 32.573312980821015 35.0 32.0 40.0 12.0 40.0 40 32.38158976365007 35.0 32.0 39.0 12.0 40.0 41 32.107009427918655 35.0 31.0 39.0 10.0 40.0 42 32.249899371283114 35.0 32.0 39.0 10.0 40.0 43 32.02640440838818 35.0 31.0 39.0 10.0 40.0 44 31.826217040551956 35.0 31.0 39.0 10.0 40.0 45 31.742861030324676 35.0 31.0 39.0 10.0 40.0 46 31.557284668718925 35.0 31.0 38.0 10.0 40.0 47 31.558575834367968 35.0 31.0 38.0 10.0 40.0 48 31.605480154883185 35.0 31.0 38.0 10.0 40.0 49 31.647092255273794 35.0 31.0 38.0 10.0 40.0 50 31.78903260370427 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 7.0 14 30.0 15 66.0 16 181.0 17 439.0 18 774.0 19 1306.0 20 2196.0 21 3145.0 22 4504.0 23 6540.0 24 9959.0 25 15414.0 26 22311.0 27 25031.0 28 22798.0 29 21130.0 30 22101.0 31 26301.0 32 36127.0 33 56897.0 34 94139.0 35 63654.0 36 62276.0 37 90302.0 38 98489.0 39 19442.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.00864556581685 21.966823704157243 28.286590585687478 24.73794014433843 2 38.64497054838399 20.92793850026362 28.190072055830512 12.23701889552188 3 26.29300814667415 18.421007874551425 42.54156958121446 12.744414397559966 4 23.25586339439087 24.605988967691093 38.769268273324606 13.36887936459343 5 19.80316456055014 28.96831470993418 38.80838591538117 12.420134814134508 6 17.81029077447262 36.27197532753939 35.91155444438775 10.006179453600241 7 74.43846341366623 4.735360647652091 18.41973229926697 2.4064436394147095 8 75.9131701730814 3.668979709849142 17.83112517078536 2.5867249462841078 9 72.54848603386795 5.07027002511466 19.073110306081375 3.308133634936023 10 44.45549943024304 22.82882913527334 23.18173829730542 9.5339331371782 11 40.053772584769064 17.42605915267786 31.386521988083295 11.133646274469786 12 35.980152048573906 18.790924707042876 32.77519828109144 12.453724963291778 13 19.039520156924105 35.28255409856512 33.43481243374095 12.243113310769823 14 13.617616545061823 36.66896270217868 35.960026305196976 13.753394447562517 15 12.5404640826346 20.57942298643355 53.322590154826486 13.557522776105358 16 14.229325759250756 16.75028771309194 51.691979749533715 17.3284067781236 17 14.698170541580918 16.892301761427735 37.42707961290542 30.982448084085924 18 18.8986399532856 20.399425140738472 42.10475591158279 18.597178994393136 19 24.65927966846381 21.652323531245926 34.850984460658424 18.83741233963184 20 27.120147853348524 20.82036498460806 33.93979851579729 18.119688646246125 21 19.499861104024582 25.210753383109115 36.394855746608386 18.894529766257918 22 19.765180763190866 21.862509992006395 34.07415911242637 24.298150132376367 23 16.994914706532647 26.254457426966226 34.282361344966574 22.468266521534545 24 16.947860151595037 20.942395020154088 45.71137416308088 16.398370665169992 25 15.02925319319013 22.823443372961204 42.794133487536214 19.353169946312455 26 14.882278574303678 30.355290235896387 36.473516222483006 18.288914967316927 27 15.880345369094794 29.468056760265547 37.40695386952849 17.24464400111117 28 13.79775612134406 24.568572092680466 45.598698346287506 16.034973439687967 29 14.624045444495467 21.560765571939612 44.25169084590483 19.563498137660083 30 17.515207692002427 26.699491470653264 38.726040444240354 17.059260393103955 31 25.836777386601355 23.728676633161555 33.091824412810176 17.34272156742691 32 26.816986127410132 23.098825903815953 33.866948993996296 16.217238974777626 33 25.113101008554857 24.455329353538446 32.026435589117355 18.405134048789336 34 18.785680675317902 25.558135052241894 34.04581299499407 21.610371277446127 35 19.42800369633371 24.015114149814902 35.557794898832704 20.99908725501868 36 27.66269254100266 23.5890720048075 30.530610972215133 18.217624481974703 37 20.33592983769013 29.215351123356637 32.07193110759619 18.376787931357043 38 20.698334949062026 30.116757657703623 28.681593732106514 20.503313661127837 39 20.385393812609486 28.501170694649954 31.18682359077277 19.926611901967785 40 22.718846199636037 25.072424330039517 29.355664404646497 22.853065065677956 41 17.78336196291194 23.011945053885967 31.532079301098126 27.672613682103965 42 21.310752816186767 23.700047054554936 28.73899461990691 26.25020550935138 43 21.694275785045722 25.197855899677425 29.21407554807218 23.893792767204676 44 19.795936300604904 28.540004875532198 30.368896372263894 21.295162451599005 45 17.677347483715156 34.02823840218605 26.44664410315719 21.8477700109416 46 21.116865372949867 30.254803249598904 28.702711589593573 19.925619787857656 47 20.758712179192816 25.77625842588341 30.584326864749332 22.880702530174442 48 22.06362569518853 22.752152887618983 33.10089517038851 22.083326246803974 49 20.489565794173174 22.98133124705909 34.179181477513026 22.34992148125471 50 18.92571049543344 29.943846341366626 30.12313553412589 21.007307629074045 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 300.0 1 527.0 2 754.0 3 9786.0 4 18818.0 5 14071.5 6 9325.0 7 9625.0 8 9925.0 9 10598.0 10 11271.0 11 11356.5 12 11442.0 13 10977.5 14 10513.0 15 9739.5 16 8966.0 17 8364.5 18 7763.0 19 7138.5 20 6514.0 21 6082.0 22 5650.0 23 5321.5 24 4993.0 25 4962.5 26 4932.0 27 5438.5 28 5945.0 29 7263.5 30 8582.0 31 10069.5 32 11557.0 33 13299.0 34 15041.0 35 15653.5 36 16266.0 37 17742.0 38 19218.0 39 23804.5 40 28391.0 41 40470.0 42 52549.0 43 60537.5 44 68526.0 45 66865.5 46 65205.0 47 60899.0 48 56593.0 49 55218.5 50 53844.0 51 49905.0 52 45966.0 53 40769.0 54 35572.0 55 31390.5 56 27209.0 57 23897.0 58 20585.0 59 19388.5 60 18192.0 61 16474.0 62 14756.0 63 12397.5 64 10039.0 65 8458.5 66 6878.0 67 5767.0 68 4656.0 69 4014.5 70 3373.0 71 2829.5 72 2286.0 73 1867.0 74 1448.0 75 1103.0 76 758.0 77 612.0 78 466.0 79 357.0 80 248.0 81 180.5 82 113.0 83 80.0 84 47.0 85 36.5 86 26.0 87 25.0 88 24.0 89 25.5 90 27.0 91 19.0 92 11.0 93 6.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 705564.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.017126065447663 #Duplication Level Percentage of deduplicated Percentage of total 1 76.01253369328312 23.576903401186506 2 7.6183475524428665 4.725984928890301 3 3.3966730903013276 3.1606511233496994 4 2.236835369201032 2.7752081853664237 5 1.4988340142555396 2.324476178567253 6 1.0937744236226385 2.035544351079944 7 0.8705482154388975 1.8901332621023146 8 0.6711377918284823 1.6653412397144167 9 0.5320407376866317 1.485213716950203 >10 5.241847730634382 35.508594296681686 >50 0.7429866502147241 15.377300207069117 >100 0.08352289705679329 3.6478207201431365 >500 4.589170167955675E-4 0.13166715441262736 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.589170167955675E-4 1.6951612344864637 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11909 1.6878695625060236 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 925 0.13110079312436576 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02990515389107154 0.0 2 0.0 0.0 0.0 0.1284079119682977 0.0 3 0.0 0.0 0.0 0.17078535752957918 0.0 4 0.0 0.0 0.0 0.2640440838818307 0.0 5 0.0 0.0 0.0 0.48145880458753565 0.0 6 0.0 0.0 0.0 0.6820075854210249 0.0 7 0.0 0.0 0.0 0.8325254689865129 0.0 8 0.0 0.0 0.0 1.276000476214773 0.0 9 2.83461174322953E-4 0.0 0.0 1.5287061131236854 0.0 10 2.83461174322953E-4 0.0 0.0 2.0010941601328867 0.0 11 2.83461174322953E-4 0.0 0.0 2.2888072520706837 0.0 12 2.83461174322953E-4 0.0 0.0 2.6007562744130936 0.0 13 2.83461174322953E-4 0.0 0.0 2.716266702949697 0.0 14 2.83461174322953E-4 0.0 0.0 2.7586441485109785 0.0 15 2.83461174322953E-4 0.0 0.0 2.820580415100544 0.0 16 2.83461174322953E-4 0.0 0.0 2.9389254553803768 0.0 17 2.83461174322953E-4 0.0 0.0 3.074136435532425 0.0 18 2.83461174322953E-4 0.0 0.0 3.2895669280178694 0.0 19 2.83461174322953E-4 0.0 0.0 3.382258732021475 0.0 20 4.251917614844295E-4 0.0 0.0 3.481895334795993 0.0 21 4.251917614844295E-4 0.0 0.0 3.5840830881394177 0.0 22 4.251917614844295E-4 0.0 0.0 3.6956250602354994 0.0 23 4.251917614844295E-4 0.0 0.0 3.8203479769375988 0.0 24 5.66922348645906E-4 0.0 0.0 3.9124728585925586 0.0 25 5.66922348645906E-4 0.0 0.0 3.97979488749426 0.0 26 5.66922348645906E-4 0.0 0.0 4.056754596322942 0.0 27 5.66922348645906E-4 0.0 0.0 4.137966222766468 0.0 28 8.50383522968859E-4 0.0 0.0 4.2179022739255405 0.0 29 8.50383522968859E-4 0.0 0.0 4.30421620150688 0.0 30 8.50383522968859E-4 0.0 0.0 4.431206807603562 0.0 31 8.50383522968859E-4 0.0 0.0 4.530985140965242 0.0 32 8.50383522968859E-4 0.0 0.0 4.618999835592519 0.0 33 8.50383522968859E-4 0.0 0.0 4.71225856194477 0.0 34 8.50383522968859E-4 0.0 0.0 4.807926708278767 0.0 35 8.50383522968859E-4 0.0 0.0 4.930240204999121 0.0 36 9.921141101303355E-4 0.0 0.0 5.038805834764812 0.0 37 9.921141101303355E-4 0.0 0.0 5.135324364621778 0.0 38 9.921141101303355E-4 0.0 0.0 5.230709049781451 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTACTAG 20 7.8544114E-4 44.000004 29 CAACCCG 20 7.8544114E-4 44.000004 23 ACGATAT 20 7.8544114E-4 44.000004 22 CGCTATA 20 7.8544114E-4 44.000004 22 TATTACG 20 7.8544114E-4 44.000004 1 TCGTAAG 20 7.8544114E-4 44.000004 1 GCGTATG 20 7.8544114E-4 44.000004 1 CCCATAC 20 7.8544114E-4 44.000004 11 ATCGAGC 20 7.8544114E-4 44.000004 29 TCTAGCG 45 4.783942E-10 44.0 1 TTATACG 25 4.441088E-5 44.0 1 ACTACCG 25 4.441088E-5 44.0 1 CAAATCG 25 4.441088E-5 44.0 39 ACGCTAG 25 4.441088E-5 44.0 1 GCGATAC 30 2.5263216E-6 44.0 9 CGTAAGG 45 4.783942E-10 44.0 2 CGGTAAT 25 4.441088E-5 44.0 6 ATCGCCT 25 4.441088E-5 44.0 42 CGTTTTT 10175 0.0 43.43784 1 CGTTGAT 115 0.0 42.08696 25 >>END_MODULE