##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545984_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 938172 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.018816379086136 31.0 28.0 33.0 25.0 33.0 2 28.691266633410503 31.0 28.0 33.0 16.0 33.0 3 28.108002583747968 31.0 26.0 33.0 16.0 34.0 4 32.22248905318001 35.0 32.0 35.0 26.0 37.0 5 33.665924798437814 35.0 33.0 35.0 28.0 37.0 6 33.52910127354046 35.0 33.0 37.0 28.0 37.0 7 34.457307402054205 35.0 35.0 37.0 32.0 37.0 8 34.77416081486124 35.0 35.0 37.0 32.0 37.0 9 36.578565550879794 39.0 37.0 39.0 32.0 39.0 10 36.201320226994625 38.0 35.0 39.0 31.0 39.0 11 36.31726165351343 38.0 35.0 39.0 32.0 39.0 12 34.96283197537338 37.0 33.0 39.0 28.0 39.0 13 35.29707985316126 37.0 34.0 39.0 30.0 39.0 14 35.936815424037384 38.0 34.0 40.0 28.0 41.0 15 36.52592062009951 38.0 35.0 40.0 31.0 41.0 16 36.112194778782566 38.0 34.0 40.0 31.0 41.0 17 35.71041024460334 37.0 34.0 40.0 30.0 41.0 18 35.39361332463557 37.0 33.0 39.0 29.0 40.0 19 34.850916463079265 37.0 33.0 39.0 27.0 40.0 20 35.25173955308835 36.0 34.0 39.0 29.0 40.0 21 35.39748788068712 36.0 34.0 39.0 30.0 40.0 22 35.824652622333645 37.0 34.0 40.0 31.0 40.0 23 36.213994875140166 37.0 35.0 40.0 32.0 41.0 24 35.73891248086705 36.0 34.0 40.0 31.0 41.0 25 35.418880546424326 36.0 34.0 40.0 30.0 41.0 26 35.584318227361294 36.0 34.0 40.0 30.0 41.0 27 35.91336343442354 37.0 35.0 40.0 31.0 41.0 28 35.831690777384104 36.0 35.0 40.0 31.0 41.0 29 35.99465343241964 37.0 35.0 40.0 31.0 41.0 30 35.64409831033115 36.0 35.0 40.0 30.0 41.0 31 34.98214506508401 36.0 34.0 40.0 29.0 41.0 32 34.99704744972137 36.0 34.0 40.0 29.0 41.0 33 34.75081328370491 36.0 34.0 40.0 26.0 41.0 34 34.362130824624906 36.0 34.0 40.0 23.0 41.0 35 34.138865794331956 36.0 34.0 40.0 22.0 41.0 36 33.726360411523686 36.0 33.0 40.0 20.0 41.0 37 33.639380625301115 36.0 33.0 40.0 18.0 41.0 38 33.514309742776376 36.0 33.0 40.0 18.0 41.0 39 33.29310190455482 36.0 33.0 40.0 18.0 41.0 40 33.07805391761852 35.0 33.0 40.0 18.0 40.0 41 32.7701945911837 35.0 32.0 39.0 16.0 40.0 42 32.93102970457443 35.0 33.0 39.0 17.0 40.0 43 32.730617626618574 35.0 32.0 39.0 15.0 40.0 44 32.55642995101112 35.0 32.0 39.0 15.0 40.0 45 32.497976916812696 35.0 32.0 39.0 15.0 40.0 46 32.32146770528219 35.0 32.0 39.0 15.0 40.0 47 32.27322601825678 35.0 31.0 38.0 15.0 40.0 48 32.28368252303416 35.0 32.0 38.0 15.0 40.0 49 32.32762329295694 35.0 32.0 38.0 15.0 40.0 50 32.49317928908558 35.0 32.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 5.0 12 10.0 13 18.0 14 38.0 15 107.0 16 218.0 17 530.0 18 988.0 19 1701.0 20 2693.0 21 3951.0 22 5912.0 23 7938.0 24 11336.0 25 16888.0 26 24070.0 27 28047.0 28 27485.0 29 27043.0 30 30199.0 31 36675.0 32 48429.0 33 73960.0 34 117813.0 35 89408.0 36 93673.0 37 129349.0 38 134626.0 39 25059.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.524986889397677 22.980647471892148 28.261235679598194 22.233129959111974 2 36.99545499119564 20.470233603219878 29.506316538971532 13.027994866612946 3 27.76868207535505 19.31181062747556 39.16254162349761 13.756965673671779 4 25.3642189278725 25.20753124160602 35.1662594918629 14.261990338658585 5 20.629586046055522 28.974857488818685 36.369024016918004 14.02653244820779 6 19.0468272342385 36.35218275540093 33.923843389058725 10.677146621301851 7 76.53607227672538 5.142234046635371 15.502274636207433 2.8194190404318182 8 78.08760014155187 3.6270534614121934 15.202969178359618 3.0823772186763194 9 74.21421658288672 5.200858691156846 16.726570394341337 3.8583543316150983 10 44.65950806461928 20.513082888851937 22.288130534699395 12.539278511829387 11 38.813138742149626 20.218893763616904 27.469909568821073 13.498057925412398 12 34.31396375078344 19.803404919353806 31.289251864263694 14.593379465599057 13 20.776574018410273 31.942756765283974 31.83797853698469 15.442690679321064 14 16.533642018734305 33.23761527736918 34.782321365378635 15.446421338517885 15 15.550879796028875 20.86046055520736 47.85316551762364 15.735494131140133 16 17.731290211176628 17.903326895281463 45.959909270368335 18.405473623173577 17 17.98444208524663 18.077708565167157 34.95073398054941 28.987115369036808 18 21.717339677585773 20.987622738687577 38.061037848070505 19.23399973565615 19 25.513551886008106 22.617387856384543 32.18397052992415 19.6850897276832 20 27.16676686151367 21.2837304886524 32.0167304076438 19.53277224219013 21 21.761787817159327 24.92400114264762 33.90391100992142 19.410300030271635 22 21.929454300490743 21.77127435054553 32.73109834870365 23.56817300026008 23 19.376724097500244 25.466545580128162 32.15327253424745 23.00345778812414 24 19.205753316023074 21.859104727064974 40.71076519017834 18.224376766733606 25 18.425725773099174 22.198807894501222 38.689813808128996 20.685652524270605 26 17.199724570761013 27.829012164080787 33.766729341741176 21.204533923417028 27 17.585261551186775 27.7957560020977 34.7526892723296 19.866293174385934 28 16.66218987563048 24.93700515470511 40.13901502069983 18.261789948964584 29 17.835855258950385 23.04545435165407 38.64312727303735 20.475563116358195 30 19.645757920722424 25.57494787736151 36.00597758193593 18.773316619980132 31 25.804969664411214 23.547281308757885 31.87912237841249 18.76862664841841 32 26.659930162059837 23.33356783191142 31.83019744780275 18.176304558225997 33 25.124390836648292 24.556371326366595 30.555271314854842 19.763966522130268 34 19.517423244351782 25.203374221358132 33.41743305065596 21.86176948363413 35 20.326336748485353 24.736082509390602 33.566872599054335 21.370708143069713 36 26.9749043885343 24.637273335806228 29.261691885922836 19.126130389736637 37 21.477937947412627 27.834661448007402 31.210481660079388 19.476918944500582 38 21.602861735374752 28.41429929693063 28.194296994580952 21.788541973113674 39 21.604353999053476 27.638215593729083 28.952793304426056 21.804637102791386 40 23.525217124365255 24.392648682757535 28.601045437297213 23.48108875558 41 19.56379000865513 23.669646930413613 29.897396213061146 26.869166847870112 42 22.447269797009504 24.258558132197507 27.55283679325326 25.74133527753973 43 21.839492118715974 24.91781890740717 29.074306203979656 24.168382769897203 44 20.766661123973 27.042376024865376 30.23752574154846 21.953437109613162 45 18.91017851737208 30.699914301428738 27.59398063468106 22.79592654651812 46 22.10223711643494 27.91780185296513 29.18004374464384 20.79991728595609 47 21.58985772331726 25.805715796250585 30.24882430940169 22.355602171030473 48 22.396106470881673 24.08108534469159 31.40170459148216 22.12110359294458 49 21.44681359068486 23.50912199468754 32.30036709686497 22.743697317762628 50 19.869384292006156 27.907249416951263 30.303291933675276 21.920074357367305 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 381.0 1 821.5 2 1262.0 3 13485.0 4 25708.0 5 17915.5 6 10123.0 7 10219.0 8 10315.0 9 10703.5 10 11092.0 11 10995.5 12 10899.0 13 10331.5 14 9764.0 15 9165.5 16 8567.0 17 7896.5 18 7226.0 19 6689.5 20 6153.0 21 5915.5 22 5678.0 23 5627.0 24 5576.0 25 5873.5 26 6171.0 27 6799.0 28 7427.0 29 8362.0 30 9297.0 31 11066.5 32 12836.0 33 14852.0 34 16868.0 35 19085.0 36 21302.0 37 23348.5 38 25395.0 39 31501.5 40 37608.0 41 49232.0 42 60856.0 43 69832.5 44 78809.0 45 79472.0 46 80135.0 47 77504.5 48 74874.0 49 74040.0 50 73206.0 51 67314.0 52 61422.0 53 56534.0 54 51646.0 55 47476.0 56 43306.0 57 40731.5 58 38157.0 59 36400.5 60 34644.0 61 30533.5 62 26423.0 63 24031.5 64 21640.0 65 17804.5 66 13969.0 67 11681.5 68 9394.0 69 8447.0 70 7500.0 71 6159.5 72 4819.0 73 4262.0 74 3705.0 75 2784.0 76 1863.0 77 1435.0 78 1007.0 79 780.5 80 554.0 81 421.5 82 289.0 83 214.0 84 139.0 85 109.0 86 79.0 87 58.0 88 37.0 89 31.5 90 26.0 91 20.0 92 14.0 93 11.5 94 9.0 95 5.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 938172.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.892009100659912 #Duplication Level Percentage of deduplicated Percentage of total 1 74.5394377598437 22.281335518753206 2 7.901044382233286 4.723561811568705 3 3.574638266680518 3.205593587975436 4 2.277175149468378 2.7227736116682135 5 1.6668459074469983 2.4912686517401696 6 1.2081199283947135 2.1667879136558024 7 0.9759544717943628 2.042126796689478 8 0.7701566976333021 1.8417224811671078 9 0.6070939534989783 1.6332532184652355 >10 5.623476950766927 36.126776854882706 >50 0.7744417421382004 15.590204506192201 >100 0.08089571706028402 3.27716471661433 >500 0.0 0.0 >1k 3.5953652026790106E-4 0.13541558859193295 >5k 0.0 0.0 >10k+ 3.5953652026790106E-4 1.7620147420355083 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16395 1.747547358053747 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1260 0.13430373108555788 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01939942782346947 0.0 2 0.0 0.0 0.0 0.09518510465031998 0.0 3 0.0 0.0 0.0 0.15061204128880418 0.0 4 0.0 0.0 0.0 0.24281261858166733 0.0 5 0.0 0.0 0.0 0.42337652370780626 0.0 6 0.0 0.0 0.0 0.6800458764490946 0.0 7 0.0 0.0 0.0 0.8600768302614019 0.0 8 0.0 0.0 0.0 1.361370836051385 0.0 9 0.0 0.0 0.0 1.6440482129076543 0.0 10 2.1318052553263153E-4 0.0 0.0 2.0474923574781596 0.0 11 2.1318052553263153E-4 0.0 0.0 2.294142225519414 0.0 12 2.1318052553263153E-4 0.0 0.0 2.520859714423368 0.0 13 4.2636105106526307E-4 0.0 0.0 2.616471180124753 0.0 14 4.2636105106526307E-4 0.0 0.0 2.6577216118153175 0.0 15 5.329513138315788E-4 0.0 0.0 2.701210439023974 0.0 16 5.329513138315788E-4 0.0 0.0 2.8005525639221807 0.0 17 6.395415765978946E-4 0.0 0.0 2.918867755592791 0.0 18 6.395415765978946E-4 0.0 0.0 3.096766904149772 0.0 19 6.395415765978946E-4 0.0 0.0 3.1661571652106435 0.0 20 6.395415765978946E-4 0.0 0.0 3.2637938459045888 0.0 21 6.395415765978946E-4 0.0 0.0 3.3549285205697887 0.0 22 6.395415765978946E-4 0.0 0.0 3.450753166796707 0.0 23 6.395415765978946E-4 0.0 0.0 3.5509480137970435 0.0 24 6.395415765978946E-4 0.0 0.0 3.6349411408569003 0.0 25 6.395415765978946E-4 0.0 0.0 3.7009205135092498 0.0 26 6.395415765978946E-4 0.0 0.0 3.7706305453584203 0.0 27 7.461318393642104E-4 0.0 0.0 3.854197311367212 0.0 28 7.461318393642104E-4 0.0 0.0 3.93179502266109 0.0 29 7.461318393642104E-4 0.0 0.0 4.014295886042218 0.0 30 7.461318393642104E-4 0.0 0.0 4.13516924401922 0.0 31 8.527221021305261E-4 0.0 0.0 4.227263231049317 0.0 32 8.527221021305261E-4 0.0 0.0 4.315306788094294 0.0 33 8.527221021305261E-4 0.0 0.0 4.402923984088206 0.0 34 8.527221021305261E-4 0.0 0.0 4.500667255044917 0.0 35 8.527221021305261E-4 0.0 0.0 4.621114251970854 0.0 36 8.527221021305261E-4 0.0 0.0 4.721095918445658 0.0 37 8.527221021305261E-4 0.0 0.0 4.818626008876837 0.0 38 9.593123648968419E-4 0.0 0.0 4.942590484474063 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 20 7.855742E-4 44.0 1 CGCATCG 20 7.855742E-4 44.0 21 ACCGAAC 20 7.855742E-4 44.0 31 TCGGACG 25 4.442213E-5 44.0 1 GTATCGC 20 7.855742E-4 44.0 14 TGCTCGA 20 7.855742E-4 44.0 31 CATCGTT 25 4.442213E-5 44.0 36 GTATACG 20 7.855742E-4 44.0 1 CGTTTTT 10470 0.0 43.22254 1 TATACGG 100 0.0 41.8 2 ACGGGTA 65 0.0 40.615383 5 TACGGGT 55 7.8216544E-11 40.0 4 ATGCGAG 55 7.8216544E-11 40.0 1 GTTTTTT 11860 0.0 39.344013 2 AGTACGG 135 0.0 39.111115 2 AATCGTT 265 0.0 39.018867 22 ACACGTG 80 0.0 38.5 42 TCTAGCG 40 4.123467E-7 38.5 1 ATCGTTG 270 0.0 38.2963 23 TTATACG 35 7.288778E-6 37.714287 1 >>END_MODULE