##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545982_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 797314 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.821479366974618 28.0 25.0 30.0 16.0 33.0 2 25.973386896505016 30.0 25.0 31.0 10.0 33.0 3 26.188013756186397 30.0 25.0 31.0 16.0 33.0 4 28.20946954399396 32.0 19.0 35.0 10.0 37.0 5 31.123375483184795 33.0 30.0 35.0 19.0 37.0 6 29.70180255206857 33.0 28.0 35.0 17.0 37.0 7 29.57916830759274 32.0 28.0 35.0 17.0 35.0 8 32.30071339522446 33.0 32.0 35.0 28.0 35.0 9 26.885074136413007 30.0 23.0 34.0 10.0 35.0 10 31.097024509791627 34.0 28.0 37.0 17.0 37.0 11 33.429856994860245 35.0 32.0 37.0 27.0 39.0 12 32.885607176093735 35.0 31.0 37.0 23.0 39.0 13 33.108610911134136 35.0 31.0 37.0 23.0 39.0 14 32.784512751563376 35.0 30.0 38.0 21.0 40.0 15 31.72962220655852 34.0 27.0 38.0 18.0 40.0 16 30.28550357826402 33.0 26.0 37.0 17.0 40.0 17 30.402546550041766 32.0 26.0 37.0 17.0 40.0 18 31.353493103093637 34.0 27.0 37.0 17.0 39.0 19 30.985286850600893 34.0 27.0 37.0 18.0 39.0 20 31.73960070938175 34.0 29.0 37.0 19.0 39.0 21 32.62418068665544 34.0 31.0 37.0 23.0 39.0 22 33.067081476055854 35.0 31.0 37.0 25.0 39.0 23 34.37902883932804 35.0 33.0 38.0 28.0 40.0 24 34.00944044629845 35.0 33.0 38.0 27.0 40.0 25 32.77109896477423 35.0 31.0 38.0 23.0 40.0 26 26.504498854905346 33.0 20.0 36.0 0.0 39.0 27 29.722292597395757 34.0 24.0 37.0 15.0 39.0 28 31.180820856024102 34.0 27.0 37.0 19.0 39.0 29 32.52094281550305 34.0 30.0 37.0 23.0 39.0 30 32.270247355496075 35.0 30.0 37.0 22.0 39.0 31 31.17784963013317 34.0 29.0 36.0 19.0 39.0 32 31.527312953240504 34.0 30.0 37.0 19.0 39.0 33 31.28971145621424 34.0 30.0 37.0 18.0 39.0 34 31.289644983030524 34.0 30.0 37.0 17.0 39.0 35 30.506398984590763 34.0 29.0 37.0 13.0 39.0 36 30.256093584208983 34.0 27.0 37.0 11.0 39.0 37 30.356958488123876 34.0 28.0 37.0 10.0 39.0 38 30.11697273596099 34.0 27.0 37.0 10.0 39.0 39 29.988248042803715 34.0 27.0 37.0 10.0 39.0 40 29.875690129610167 33.0 27.0 36.0 10.0 39.0 41 29.285218872363963 33.0 26.0 36.0 10.0 38.0 42 29.4628791166341 33.0 26.0 36.0 10.0 38.0 43 29.016314776863318 33.0 26.0 36.0 10.0 38.0 44 28.785753166255702 33.0 25.0 35.0 10.0 38.0 45 28.2763541089207 32.0 24.0 35.0 10.0 38.0 46 27.853785334259776 31.0 23.0 35.0 8.0 38.0 47 27.920824167141177 31.0 23.0 35.0 9.0 38.0 48 28.011769516150476 32.0 23.0 35.0 9.0 38.0 49 27.849426950987944 31.0 24.0 35.0 8.0 38.0 50 29.69281989279004 34.0 26.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 9.0 11 17.0 12 58.0 13 136.0 14 314.0 15 627.0 16 1199.0 17 2192.0 18 3754.0 19 5920.0 20 8352.0 21 11906.0 22 15331.0 23 20539.0 24 26237.0 25 32438.0 26 38683.0 27 43237.0 28 49017.0 29 57070.0 30 68271.0 31 79787.0 32 87063.0 33 85377.0 34 72917.0 35 54985.0 36 26658.0 37 5082.0 38 137.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.670706898411414 23.84455810383362 27.990101766681637 23.49463323107333 2 36.95470040661521 17.570116666708476 31.264219617365303 14.210963309311012 3 29.24556699117286 14.919968795229984 40.824693909802164 15.009770303794992 4 26.661265197901958 25.13677171101975 33.98347451568642 14.218488575391877 5 19.95086001249194 29.17909380745854 37.05804739412578 13.811998785923741 6 19.04318750203809 34.71003895579408 35.24194984660999 11.004823695557835 7 79.17558201662081 3.5980805554649735 15.266507298253886 1.9598301296603344 8 81.34198070020092 2.0979187622442352 14.638774686008274 1.9213258515465677 9 68.73126522298617 3.210529352300348 14.94053785585102 13.117667568862457 10 46.10818322517854 20.299028989833364 22.158898501719523 11.433889283268574 11 40.08195014762064 19.632917520575333 27.553260070687337 12.7318722611167 12 35.23367205392104 19.90984731235122 31.636594867266847 13.219885766460893 13 20.206091953734663 33.01033219032903 31.97146920786541 14.812106648070896 14 15.808577298278973 33.76662143145611 35.36310663051194 15.06169463975297 15 14.005147281999314 19.078054568212774 48.49268920400244 18.424108945785473 16 15.755147909104819 15.920954605086578 46.38097412060995 21.942923365198656 17 17.049242832811164 16.95304484807742 35.67741191048947 30.320300408621947 18 21.342532553046855 20.41654856179623 39.32428127437873 18.916637610778185 19 26.18290911736154 21.836440850154393 32.988508918694514 18.992141113789547 20 27.956865174824475 20.746531479442226 32.616008247691624 18.680595098041675 21 21.58860875389119 24.540018110807036 34.509365193637635 19.362007941664135 22 21.567412587763414 21.37313530177571 32.900839568852426 24.158612541608452 23 18.65877182640716 25.436778985443624 32.65840057994717 23.246048608202038 24 18.461609855088458 21.083788820966394 42.97629290342324 17.478308420521902 25 17.744828260885924 20.807987819102635 40.686981540522304 20.760202379489133 26 13.653215671617454 39.925675455341306 28.283712564936774 18.13739630810446 27 16.625946615762423 28.738865741727853 35.38492990214645 19.25025774036327 28 15.992444632854811 24.771796306097723 41.6173552703201 17.618403790727367 29 17.0104877124947 22.703978608176953 40.05209992549987 20.23343375382848 30 19.13700248584623 25.58603009604748 36.728189897581125 18.548777520525164 31 26.63154039688253 23.15235904549525 32.28364232912002 17.932458228502195 32 27.094720524159865 22.434699503583282 32.44957444620313 18.021005526053727 33 25.62052089891812 24.250797051099067 30.729298620117042 19.399383429865775 34 19.37919063254878 24.580027442136977 33.334044052907636 22.706737872406606 35 20.12406655345322 24.349628878961113 33.81001713252245 21.716287435063226 36 27.41191048946839 24.166639492094706 29.102085251231006 19.319364767205894 37 20.71806088943628 28.47397637568135 30.988418615501544 19.819544119380822 38 20.982950255482784 29.273535896773417 27.888636095691282 21.854877752052516 39 21.047542122676887 28.0876793835302 28.8264096704686 22.038368823324312 40 23.508429552221585 23.966843677647702 28.629623962453937 23.895102807676775 41 18.848157689442303 23.10620408019927 30.039607983805627 28.0060302465528 42 21.787777462831457 23.540788196369313 26.878243703233608 27.79319063756563 43 21.335007286965986 24.102047624900607 29.124284786169564 25.438660301963843 44 19.80725285144874 26.7094269008195 30.467670202705584 23.015650045026177 45 18.138775940219286 31.882796489212534 27.0055461211016 22.972881449466584 46 21.313560278635517 27.90055110031932 28.96274240763363 21.82314621341153 47 20.99774994544182 25.553671451899753 29.646789094384395 23.80178950827403 48 21.531291310575256 23.578414526773642 32.13138111208382 22.75891305056728 49 21.088053138412217 23.295840785437104 32.21390819677066 23.40219787938002 50 19.410044223480334 28.67239255801353 30.160764767707576 21.756798450798556 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 206.0 1 471.5 2 737.0 3 8049.0 4 15361.0 5 12157.5 6 8954.0 7 8685.5 8 8417.0 9 8961.5 10 9506.0 11 9744.5 12 9983.0 13 9996.5 14 10010.0 15 9450.0 16 8890.0 17 8515.5 18 8141.0 19 7812.0 20 7483.0 21 6953.5 22 6424.0 23 6372.5 24 6321.0 25 6324.0 26 6327.0 27 6665.0 28 7003.0 29 7873.5 30 8744.0 31 10134.5 32 11525.0 33 13336.0 34 15147.0 35 16306.0 36 17465.0 37 19261.5 38 21058.0 39 25750.0 40 30442.0 41 39802.0 42 49162.0 43 56909.0 44 64656.0 45 65738.0 46 66820.0 47 64779.5 48 62739.0 49 60740.5 50 58742.0 51 54920.5 52 51099.0 53 47319.5 54 43540.0 55 40469.5 56 37399.0 57 35457.5 58 33516.0 59 31563.0 60 29610.0 61 26604.5 62 23599.0 63 21107.0 64 18615.0 65 15703.5 66 12792.0 67 10685.0 68 8578.0 69 7677.5 70 6777.0 71 5610.5 72 4444.0 73 3803.0 74 3162.0 75 2462.5 76 1763.0 77 1367.0 78 971.0 79 779.0 80 587.0 81 423.0 82 259.0 83 209.5 84 160.0 85 134.0 86 108.0 87 71.0 88 34.0 89 26.0 90 18.0 91 14.5 92 11.0 93 8.5 94 6.0 95 3.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 797314.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.12423814264293 #Duplication Level Percentage of deduplicated Percentage of total 1 81.24213281570262 37.47231481207693 2 7.3536920112355215 6.783668831077561 3 2.9648751184164315 4.102578180751084 4 1.7172337686698507 3.1682439717086557 5 1.1212534222323012 2.5858479932648013 6 0.7875439744606033 2.1794919495494622 7 0.5814218586235808 1.8772348187944476 8 0.44474019085978533 1.6410641979856966 9 0.39103229450060717 1.623246000570908 >10 3.1533391209435857 29.508087996388916 >50 0.22198881841417145 6.570772438071325 >100 0.02015384577120879 1.2448180293300395 >500 2.963800848702769E-4 0.07518668088411355 >1k 0.0 0.0 >5k 2.963800848702769E-4 1.1674440995460542 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8540 1.07109620551 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01630474317521077 0.0 2 0.0 0.0 0.0 0.08503550671379155 0.0 3 0.0 0.0 0.0 0.13093962980707727 0.0 4 0.0 0.0 0.0 0.1908909162513138 0.0 5 0.0 0.0 0.0 0.32145428275434773 0.0 6 0.0 0.0 0.0 0.4906473484724964 0.0 7 0.0 0.0 0.0 0.5986349167329308 0.0 8 0.0 0.0 0.0 0.916451987548193 0.0 9 0.0 0.0 0.0 1.1430879176836228 0.0 10 0.0 0.0 0.0 1.4136212332907738 0.0 11 0.0 0.0 0.0 1.5914683550019189 0.0 12 0.0 0.0 0.0 1.741471992213858 0.0 13 0.0 0.0 0.0 1.812836598880742 0.0 14 0.0 0.0 0.0 1.8359140815287327 0.0 15 0.0 0.0 0.0 1.8648863559400688 0.0 16 0.0 0.0 0.0 1.919444535026351 0.0 17 0.0 0.0 0.0 2.001971619713187 0.0 18 0.0 0.0 0.0 2.1222504559057036 0.0 19 0.0 0.0 0.0 2.1632631560464257 0.0 20 0.0 0.0 0.0 2.2259737067203136 0.0 21 0.0 0.0 0.0 2.2811589913133345 0.0 22 0.0 0.0 0.0 2.3340866960820956 0.0 23 0.0 0.0 0.0 2.3932854559182455 0.0 24 0.0 0.0 0.0 2.4408200533290523 0.0 25 0.0 0.0 0.0 2.477192172719907 0.0 26 0.0 0.0 0.0 2.525980981144192 0.0 27 0.0 0.0 0.0 2.5849288987776458 0.0 28 0.0 0.0 0.0 2.636602392532929 0.0 29 0.0 0.0 0.0 2.6955503101663836 0.0 30 0.0 0.0 0.0 2.777951973751872 0.0 31 0.0 0.0 0.0 2.844801420770236 0.0 32 0.0 0.0 0.0 2.902745969592908 0.0 33 0.0 0.0 0.0 2.9704733643207066 0.0 34 0.0 0.0 0.0 3.0397058122646787 0.0 35 0.0 0.0 0.0 3.125493845586557 0.0 36 0.0 0.0 0.0 3.196231346746702 0.0 37 0.0 0.0 0.0 3.264460425879892 0.0 38 0.0 0.0 0.0 3.3531331445327686 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGTG 65 0.0 44.000004 42 TGACGTT 20 7.8550295E-4 44.0 37 ATACTCG 25 4.4416087E-5 44.0 44 TAATTCG 25 4.4416087E-5 44.0 25 AACGCAT 20 7.8550295E-4 44.0 24 TATACGG 50 2.7284841E-11 44.0 2 TCGACGG 55 1.8189894E-12 44.0 2 GCCGTTG 20 7.8550295E-4 44.0 1 TACGTAG 20 7.8550295E-4 44.0 1 CGTTTTT 9065 0.0 43.344734 1 ATAGGGT 150 0.0 41.066666 4 ACGGCGG 165 0.0 40.0 5 GCGTAAG 55 7.8216544E-11 40.0 1 CGGGAAT 1175 0.0 39.693615 9 ATTTACG 50 1.3460522E-9 39.600002 1 CGTAGGC 50 1.3460522E-9 39.600002 3 CGTAAGG 145 0.0 39.448277 2 GTTTTTT 10400 0.0 38.859615 2 CTAGCGG 75 0.0 38.13333 2 TGGGATC 220 0.0 38.0 6 >>END_MODULE