##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545981_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1241530 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.122004301144557 31.0 28.0 33.0 25.0 33.0 2 28.81375721891537 31.0 28.0 33.0 16.0 33.0 3 28.1785281064493 31.0 27.0 33.0 16.0 34.0 4 32.08701682601306 35.0 32.0 35.0 25.0 37.0 5 33.63517756316803 35.0 33.0 35.0 28.0 37.0 6 33.47403445748391 35.0 33.0 37.0 28.0 37.0 7 34.30948909812892 35.0 35.0 37.0 31.0 37.0 8 34.77711533349979 35.0 35.0 37.0 32.0 37.0 9 36.60167454672863 39.0 37.0 39.0 32.0 39.0 10 36.33338541960323 39.0 35.0 39.0 32.0 39.0 11 36.33446392757324 38.0 35.0 39.0 31.0 39.0 12 35.14894203120343 37.0 34.0 39.0 29.0 39.0 13 35.17392249885222 37.0 34.0 39.0 27.0 39.0 14 35.91750743034804 38.0 34.0 40.0 27.0 41.0 15 36.579263489404205 38.0 35.0 40.0 31.0 41.0 16 36.231826858795195 38.0 34.0 40.0 31.0 41.0 17 35.84164377824136 37.0 34.0 40.0 30.0 41.0 18 35.46037147712902 37.0 34.0 39.0 29.0 40.0 19 34.8927387980959 37.0 33.0 39.0 27.0 40.0 20 35.26855170636231 35.0 34.0 39.0 30.0 40.0 21 35.42588982948459 35.0 34.0 39.0 30.0 40.0 22 35.763578810016675 36.0 34.0 39.0 31.0 41.0 23 36.098525206801284 36.0 35.0 40.0 32.0 41.0 24 35.766446239720345 36.0 35.0 40.0 31.0 41.0 25 35.394497917891634 35.0 34.0 40.0 30.0 41.0 26 35.48819601620581 35.0 34.0 40.0 30.0 41.0 27 35.76941837893567 36.0 35.0 40.0 31.0 41.0 28 35.73012331558641 36.0 35.0 40.0 31.0 41.0 29 35.899614991180236 36.0 35.0 40.0 31.0 41.0 30 35.523548363712514 36.0 35.0 40.0 30.0 41.0 31 34.806589450113975 35.0 34.0 39.0 29.0 41.0 32 34.67359467753498 35.0 34.0 40.0 27.0 41.0 33 34.25674611165256 36.0 34.0 40.0 23.0 41.0 34 33.83613605792852 36.0 34.0 40.0 21.0 41.0 35 33.482919462276385 36.0 33.0 40.0 18.0 41.0 36 33.030065322626115 35.0 33.0 40.0 15.0 41.0 37 32.89856628514816 35.0 33.0 40.0 15.0 41.0 38 32.756982916240446 35.0 33.0 40.0 15.0 41.0 39 32.59122373200809 35.0 32.0 40.0 12.0 40.0 40 32.41345436678937 35.0 32.0 39.0 12.0 40.0 41 32.16548452312872 35.0 31.0 39.0 10.0 40.0 42 32.317043486665646 35.0 32.0 39.0 10.0 40.0 43 32.08424444032766 35.0 31.0 39.0 10.0 40.0 44 31.906248741472215 35.0 31.0 39.0 10.0 40.0 45 31.846989601540034 35.0 31.0 39.0 10.0 40.0 46 31.683728947347223 35.0 31.0 39.0 10.0 40.0 47 31.661008594234534 35.0 31.0 39.0 10.0 40.0 48 31.674428326339275 35.0 31.0 38.0 10.0 40.0 49 31.67979267516693 35.0 31.0 39.0 10.0 40.0 50 31.78422349842533 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 5.0 13 20.0 14 36.0 15 133.0 16 306.0 17 740.0 18 1590.0 19 2531.0 20 4104.0 21 6135.0 22 8597.0 23 12591.0 24 17755.0 25 27770.0 26 39204.0 27 43359.0 28 39623.0 29 36921.0 30 39292.0 31 47218.0 32 63349.0 33 96902.0 34 157289.0 35 111035.0 36 111429.0 37 157511.0 38 177192.0 39 38892.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.766191715061254 22.256006701408744 27.680603771153333 24.297197812376663 2 38.46858311921581 20.168904496870795 29.265986323326864 12.096526060586536 3 26.058250706789206 18.73849202194067 42.48975054972494 12.71350672154519 4 23.760279654941886 24.533841308707803 38.04821470282635 13.65766433352396 5 19.739192770210952 29.291841518126827 38.49210248644817 12.47686322521405 6 17.966460737960418 35.87339814583619 35.74911601008433 10.411025106119062 7 75.21848042334861 4.552447383470396 17.869483621016006 2.35958857216499 8 76.60080706869749 3.2046748769663234 17.47432603320097 2.720192021135212 9 73.15401158248291 4.8456340160930464 18.85576667498973 3.144587726434319 10 44.0168985042649 23.637930617866665 23.469267758330446 8.87590311953799 11 37.962111265938 18.92632477668683 31.910304221404235 11.20125973597094 12 34.74229378267138 19.567952445772555 33.30825674772257 12.381497023833496 13 19.060111314265463 34.65675416623037 33.42408157676415 12.859052942740007 14 13.771636609667103 35.53277004985784 36.841961128607444 13.853632211867614 15 12.783984277464096 21.214871972485565 52.390115422100145 13.611028327950189 16 14.75526165296046 17.52587533124451 50.63542564416487 17.08343737163017 17 15.22113843402898 18.11635643117766 37.28858746868783 29.37391766610553 18 19.2204779586478 20.82607750114778 41.69742172964004 18.256022810564385 19 24.712894573630923 21.93084339484346 34.92585761117331 18.430404420352307 20 26.26098443050108 21.42888210514446 34.732547743510025 17.57758572084444 21 19.833350784918608 25.139787198054016 37.035915362496276 17.990946654531104 22 20.040192343318324 22.006153697453946 34.73198392306267 23.221670036165055 23 16.658880574774674 26.52694659009448 34.92956271697019 21.88461011816066 24 16.652275820962846 21.203998292429503 45.93002182790589 16.213704058701765 25 15.056261226067836 22.623214904190796 43.033595644084315 19.28692822565705 26 14.433722906413859 29.83262587291487 36.77381940025614 18.959831820415133 27 15.264794245809608 30.171965236442134 37.33167946002111 17.23156105772716 28 13.36190023599913 25.10724670366403 45.02444564368159 16.506407416655257 29 14.238882668964905 21.52924214477298 43.798216716470804 20.433658469791304 30 17.46321071581033 26.905028472932592 38.29202677341667 17.339734037840408 31 24.457564456759 24.16316963746345 33.79467270223031 17.584593203547236 32 26.042947008932526 23.05332935974161 34.12885713595322 16.774866495372645 33 24.560743598624278 24.89718331413659 32.31657712660991 18.225495960629225 34 18.39045371436856 25.716897698807117 33.5901669713982 22.302481615426128 35 18.686137266115196 24.85932679838586 35.55145667039862 20.90307926510032 36 27.19515436598391 23.892374731178464 30.629706893913156 18.28276400892447 37 18.99503032548549 29.871207300669333 32.849145812022265 18.28461656182291 38 19.734601660853947 29.450436155388914 29.89311575233784 20.921846431419297 39 19.502871456992583 28.797854260468934 31.779578423396938 19.91969585914154 40 22.691034449429335 25.013813600960106 29.918084943577682 22.377067006032878 41 17.114447496234487 23.200647588056672 32.225963126142744 27.4589417895661 42 21.16646395979155 23.365846979130588 28.982545729865567 26.485143331212296 43 21.09220075229757 24.57218109912769 29.865085821526666 24.470532327048076 44 19.32607347385887 28.188767085773197 30.4961619936691 21.988997446698832 45 16.995884110734334 33.79120923376801 27.174856829879264 22.03804982561839 46 20.53136049873946 29.65510297777742 29.32083799827632 20.4926985252068 47 19.962626758918432 25.780609409357808 30.765990350615773 23.490773481107986 48 20.923940621652314 23.044791507253148 33.821252809034014 22.210015062060524 49 20.60151587154559 23.170523467012476 33.57679637221815 22.65116428922378 50 19.130266687071597 29.42353386547244 30.698976263159167 20.747223184296796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 454.0 1 762.0 2 1070.0 3 16752.0 4 32434.0 5 23983.0 6 15532.0 7 16033.5 8 16535.0 9 17593.5 10 18652.0 11 19121.5 12 19591.0 13 18558.5 14 17526.0 15 16568.5 16 15611.0 17 14539.5 18 13468.0 19 12426.0 20 11384.0 21 10780.0 22 10176.0 23 9885.5 24 9595.0 25 9395.0 26 9195.0 27 9886.0 28 10577.0 29 13009.5 30 15442.0 31 18266.0 32 21090.0 33 23690.5 34 26291.0 35 30437.5 36 34584.0 37 37305.5 38 40027.0 39 47912.5 40 55798.0 41 73675.0 42 91552.0 43 105248.5 44 118945.0 45 120446.0 46 121947.0 47 115142.0 48 108337.0 49 101309.5 50 94282.0 51 85655.0 52 77028.0 53 68196.5 54 59365.0 55 52186.5 56 45008.0 57 40636.5 58 36265.0 59 31571.5 60 26878.0 61 23516.0 62 20154.0 63 17915.5 64 15677.0 65 13267.0 66 10857.0 67 8640.0 68 6423.0 69 5603.5 70 4784.0 71 4026.0 72 3268.0 73 2756.5 74 2245.0 75 1876.0 76 1507.0 77 1246.0 78 985.0 79 765.0 80 545.0 81 395.5 82 246.0 83 167.0 84 88.0 85 61.0 86 34.0 87 36.0 88 38.0 89 29.5 90 21.0 91 17.0 92 13.0 93 9.5 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1241530.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.505340015856284 #Duplication Level Percentage of deduplicated Percentage of total 1 78.17003629504941 22.2826346364221 2 7.2151121123447375 4.113384480298196 3 2.9506520616805574 2.523280208600749 4 1.7585726401169424 2.00514844196462 5 1.26596408881485 1.804336839976549 6 0.9684135012525593 1.656297367749004 7 0.7354924850711135 1.4675824356241434 8 0.6391495818460892 1.457534092121211 9 0.49816429185726924 1.278030827083475 >10 4.5515907828354445 28.169207683532356 >50 0.9082474183994339 18.125586222220928 >100 0.3374694356495635 13.224836480791494 >500 5.676525410024018E-4 0.09870488502204341 >1k 2.838262705012009E-4 0.09498322542285162 >5k 0.0 0.0 >10k+ 2.838262705012009E-4 1.698452173170293 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20993 1.6908975216064048 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04357526600243248 0.0 2 0.0 0.0 0.0 0.16270247194993273 0.0 3 0.0 0.0 0.0 0.22270907670374457 0.0 4 0.0 0.0 0.0 0.35351542048923507 0.0 5 0.0 0.0 0.0 0.6104564529250199 0.0 6 0.0 0.0 0.0 0.9178191425096454 0.0 7 0.0 0.0 0.0 1.1352927436308426 0.0 8 0.0 0.0 0.0 1.7596030704050647 0.0 9 0.0 0.0 0.0 2.0759063413691172 0.0 10 0.0 0.0 0.0 2.567396679903023 0.0 11 0.0 0.0 0.0 2.901258930513157 0.0 12 0.0 0.0 0.0 3.21385709568033 0.0 13 8.054577819303601E-5 0.0 0.0 3.3312928402857764 0.0 14 8.054577819303601E-5 0.0 0.0 3.376881750743035 0.0 15 1.6109155638607201E-4 0.0 0.0 3.4298003270158595 0.0 16 1.6109155638607201E-4 0.0 0.0 3.5657616006057045 0.0 17 1.6109155638607201E-4 0.0 0.0 3.735229917923852 0.0 18 1.6109155638607201E-4 0.0 0.0 4.002480809968345 0.0 19 1.6109155638607201E-4 0.0 0.0 4.1079957794012225 0.0 20 2.4163733457910805E-4 0.0 0.0 4.2267202564577575 0.0 21 2.4163733457910805E-4 0.0 0.0 4.37669649545319 0.0 22 2.4163733457910805E-4 0.0 0.0 4.525303456219342 0.0 23 2.4163733457910805E-4 0.0 0.0 4.682609361030342 0.0 24 2.4163733457910805E-4 0.0 0.0 4.803991848767247 0.0 25 2.4163733457910805E-4 0.0 0.0 4.9032242475010674 0.0 26 2.4163733457910805E-4 0.0 0.0 4.999556998219938 0.0 27 2.4163733457910805E-4 0.0 0.0 5.09854775961918 0.0 28 3.2218311277214403E-4 0.0 0.0 5.201807447262651 0.0 29 4.0272889096518004E-4 0.0 0.0 5.328103227469332 0.0 30 4.0272889096518004E-4 0.0 0.0 5.495235717219882 0.0 31 4.832746691582161E-4 0.0 0.0 5.636754649505046 0.0 32 4.832746691582161E-4 0.0 0.0 5.75942586969304 0.0 33 4.832746691582161E-4 0.0 0.0 5.875170152956433 0.0 34 4.832746691582161E-4 0.0 0.0 6.010084331429768 0.0 35 5.638204473512521E-4 0.0 0.0 6.175203176725492 0.0 36 5.638204473512521E-4 0.0 0.0 6.310197900977021 0.0 37 6.443662255442881E-4 0.0 0.0 6.4509113754802545 0.0 38 6.443662255442881E-4 0.0 0.0 6.604109445603409 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAACGG 65 0.0 44.000004 2 TATTTCG 20 7.856727E-4 44.0 38 ACTATCG 20 7.856727E-4 44.0 12 CGACGTC 30 2.5278823E-6 44.0 18 CGTTCGA 20 7.856727E-4 44.0 14 TGCGCTA 35 1.4462057E-7 44.0 22 ACGCTAT 20 7.856727E-4 44.0 12 CGTAAGT 25 4.443046E-5 44.0 30 TCGGTAA 20 7.856727E-4 44.0 12 ATACCCG 40 8.312782E-9 44.0 11 TACGTCG 20 7.856727E-4 44.0 1 ACGGTCT 95 0.0 44.0 30 CGTTTTT 17665 0.0 43.028587 1 TTGTACG 105 0.0 41.904762 1 CGACGGT 100 0.0 41.800003 28 CTAGCGG 185 0.0 41.62162 2 TAACGGG 295 0.0 41.01695 3 GGCGATA 400 0.0 40.15 8 ATCCGGG 55 7.8216544E-11 40.0 3 TAGGGTA 410 0.0 39.70732 5 >>END_MODULE