##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545980_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1241170 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.108234971841085 31.0 28.0 33.0 25.0 33.0 2 28.772063456254987 31.0 28.0 33.0 16.0 33.0 3 28.172754739479686 31.0 27.0 33.0 16.0 34.0 4 32.07439996132681 35.0 32.0 35.0 25.0 37.0 5 33.67991169622211 35.0 33.0 35.0 28.0 37.0 6 33.56574844702982 35.0 33.0 37.0 28.0 37.0 7 34.37193212855612 35.0 35.0 37.0 31.0 37.0 8 34.81418983700863 35.0 35.0 37.0 32.0 37.0 9 36.71707018377821 39.0 37.0 39.0 32.0 39.0 10 36.33914935101557 39.0 35.0 39.0 32.0 39.0 11 36.391016540844525 39.0 35.0 39.0 32.0 39.0 12 35.098345915547426 37.0 34.0 39.0 29.0 39.0 13 35.17737860244769 37.0 34.0 39.0 27.0 39.0 14 35.927800381897725 38.0 34.0 40.0 27.0 41.0 15 36.61032332396046 38.0 35.0 40.0 31.0 41.0 16 36.26440777653343 38.0 34.0 40.0 31.0 41.0 17 35.886119548490534 37.0 34.0 40.0 30.0 41.0 18 35.52758848505845 37.0 34.0 39.0 29.0 40.0 19 34.96133567520968 37.0 33.0 39.0 27.0 40.0 20 35.2421175181482 35.0 34.0 39.0 30.0 40.0 21 35.333428942046616 35.0 34.0 39.0 30.0 40.0 22 35.72832569269318 36.0 34.0 39.0 31.0 40.0 23 36.11414874674702 36.0 35.0 40.0 32.0 41.0 24 35.67486242819275 35.0 34.0 40.0 31.0 41.0 25 35.31904815617522 35.0 34.0 39.0 30.0 41.0 26 35.456292852711556 35.0 34.0 40.0 30.0 41.0 27 35.791314646664034 36.0 35.0 40.0 31.0 41.0 28 35.74611133043822 36.0 35.0 40.0 31.0 41.0 29 35.92122191158342 36.0 35.0 40.0 31.0 41.0 30 35.572500140996 36.0 35.0 40.0 31.0 41.0 31 34.85235463312842 35.0 34.0 39.0 29.0 41.0 32 34.75343506530129 35.0 34.0 40.0 27.0 41.0 33 34.35227486967941 36.0 34.0 40.0 24.0 41.0 34 33.859046705930695 36.0 34.0 40.0 21.0 41.0 35 33.52924901504226 36.0 33.0 40.0 18.0 41.0 36 33.0666137595978 35.0 33.0 40.0 15.0 41.0 37 32.93560189176342 35.0 33.0 40.0 15.0 41.0 38 32.821955090761136 35.0 33.0 40.0 15.0 41.0 39 32.62270277238412 35.0 32.0 40.0 12.0 40.0 40 32.42170935488289 35.0 32.0 39.0 12.0 40.0 41 32.168669078369604 35.0 32.0 39.0 10.0 40.0 42 32.32435121699687 35.0 32.0 39.0 10.0 40.0 43 32.11499794548692 35.0 31.0 39.0 10.0 40.0 44 31.925583119153703 35.0 31.0 39.0 10.0 40.0 45 31.855415454772512 35.0 31.0 39.0 10.0 40.0 46 31.6746738964042 35.0 31.0 39.0 10.0 40.0 47 31.65884286600546 35.0 31.0 38.0 10.0 40.0 48 31.675747883045837 35.0 31.0 38.0 10.0 40.0 49 31.739721391912468 35.0 31.0 39.0 10.0 40.0 50 31.863574691621615 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 7.0 13 16.0 14 47.0 15 117.0 16 316.0 17 676.0 18 1415.0 19 2442.0 20 3891.0 21 5823.0 22 8441.0 23 12047.0 24 17457.0 25 27161.0 26 39021.0 27 43759.0 28 39312.0 29 37285.0 30 38960.0 31 46759.0 32 62735.0 33 98041.0 34 158074.0 35 111453.0 36 112207.0 37 161221.0 38 177949.0 39 34535.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.8528646357872 22.10317684120628 27.716751129982192 24.327207393024324 2 38.630324613066705 20.22245139666605 29.066284231813533 12.080939758453717 3 25.95470402926271 18.72185115657001 42.51722165376218 12.806223160405104 4 23.55035974121192 24.624265813708032 38.04523151542496 13.780142929655085 5 19.692306452782454 29.32201068346802 38.43478330929687 12.550899554452656 6 18.03266272952134 35.84496886002723 35.817011368305714 10.305357042145717 7 75.06731551681075 4.558924240837275 17.990444499947632 2.3833157424043443 8 76.51989654922372 3.2062489425300322 17.559641306186904 2.714213202059347 9 73.14179363020375 4.857835751750365 18.93076693764754 3.069603680398334 10 44.0094427032558 23.344344449189073 23.49782866166601 9.148384185889121 11 37.935738053610706 18.835211937123844 31.98989662979286 11.239153379472594 12 34.82302988309417 19.1666733807617 33.3179177711353 12.692378965008821 13 19.069345859149028 34.62611890393742 33.406060410741475 12.89847482617208 14 13.722535994263477 35.61051266144041 36.882779957620635 13.784171386675476 15 12.79139843857006 21.186461161645866 52.4752451316097 13.546895268174383 16 14.767034330510729 17.45232321116366 50.72334974258159 17.057292715744016 17 15.136121562719046 18.18034596388891 37.25049751444202 29.43303495895002 18 19.17601940104901 20.726089093355462 41.823763062271894 18.27412844332364 19 24.655123794484236 21.906427000330332 34.976836372132745 18.461612833052683 20 26.300184503331536 21.10822852630985 34.783712142575155 17.80787482778346 21 19.806634063021182 25.13314050452396 37.102008588670365 17.958216843784495 22 20.01329390816729 21.889024066002243 34.832134195960265 23.265547829870204 23 16.662262220324372 26.611906507569472 34.89062739189636 21.835203880209804 24 16.669674581241892 21.289509092227497 45.871798383783045 16.16901794274757 25 15.0688463304785 22.498529613187557 43.1915853589758 19.241038697358135 26 14.474568350830264 29.824842688753357 36.744765020102 18.95582394031438 27 15.172861090745023 30.182972517866208 37.35757390204404 17.28659248934473 28 13.495250449172957 24.92527212227173 45.039116317668004 16.540361110887307 29 14.302875512621155 21.372253599426347 44.00259432632113 20.322276561631362 30 17.359910407115866 26.893898498996915 38.38732808559666 17.358863008290566 31 24.42292353182884 24.13255234979898 33.91968868084147 17.52483543753072 32 26.025524303681202 23.04019594414947 34.23793678545244 16.696342966716887 33 24.563758389261743 24.88893543994779 32.45204121917224 18.09526495161823 34 18.289275441720314 25.602133470838 33.7772424406004 22.33134864684129 35 18.631049735330375 24.836243222121063 35.75062239660965 20.782084645938912 36 27.188862122030024 23.731640307129563 30.782326353360133 18.297171217480283 37 18.90554879669989 29.844501559012865 32.9501196451735 18.29982999911374 38 19.806070079038328 29.392992096167326 29.968578035240945 20.832359789553408 39 19.429731624193302 28.833681123456095 31.836090140754287 19.900497111596316 40 22.706559133720603 24.91737634651176 29.943279325152876 22.43278519461476 41 17.115705342539698 23.238718306114393 32.217826728006635 27.42774962333927 42 21.079948758026703 23.43949660401073 29.087071070038757 26.393483567923816 43 21.0490907772505 24.59936994932201 29.909118009619956 24.44242126380754 44 19.276327980856774 28.20242190836066 30.609263839764093 21.911986271018474 45 17.117800140190305 33.658564096779656 27.264838821434612 21.95879694159543 46 20.570510083227923 29.64130618690429 29.398551366855468 20.389632363012318 47 20.039881724501882 25.785186557844614 30.72890901326974 23.44602270438377 48 20.961914967329214 23.060982782374694 33.85136604977561 22.12573620052048 49 20.56196975434469 23.142599321607836 33.80479708661988 22.490633837427588 50 19.120265555886785 29.450115616716488 30.646728490053736 20.78289033734299 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 459.0 1 779.5 2 1100.0 3 17381.5 4 33663.0 5 24553.5 6 15444.0 7 16166.5 8 16889.0 9 17799.5 10 18710.0 11 18983.0 12 19256.0 13 18529.5 14 17803.0 15 16665.5 16 15528.0 17 14449.0 18 13370.0 19 12235.5 20 11101.0 21 10466.0 22 9831.0 23 9597.5 24 9364.0 25 9383.0 26 9402.0 27 10028.0 28 10654.0 29 12878.0 30 15102.0 31 18106.5 32 21111.0 33 23384.5 34 25658.0 35 30333.5 36 35009.0 37 37413.5 38 39818.0 39 47470.5 40 55123.0 41 73436.5 42 91750.0 43 105199.5 44 118649.0 45 120414.5 46 122180.0 47 114938.5 48 107697.0 49 100906.5 50 94116.0 51 85552.0 52 76988.0 53 68564.0 54 60140.0 55 52648.0 56 45156.0 57 40487.0 58 35818.0 59 31398.5 60 26979.0 61 23688.0 62 20397.0 63 18034.5 64 15672.0 65 13222.0 66 10772.0 67 8653.5 68 6535.0 69 5743.0 70 4951.0 71 4177.5 72 3404.0 73 2782.5 74 2161.0 75 1815.0 76 1469.0 77 1228.5 78 988.0 79 748.0 80 508.0 81 371.0 82 234.0 83 164.0 84 94.0 85 68.5 86 43.0 87 37.0 88 31.0 89 26.5 90 22.0 91 20.5 92 19.0 93 10.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1241170.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.5368099166758 #Duplication Level Percentage of deduplicated Percentage of total 1 78.09591582158032 22.286083050691516 2 7.20867816905886 4.114253573218464 3 3.0015247591582033 2.5696182453688126 4 1.8091449768677195 2.065089052663318 5 1.271063624588107 1.813605052343589 6 0.9471257293209674 1.6216768142895226 7 0.7302642562486605 1.4587588588657454 8 0.6118277977465345 1.3967690852824977 9 0.5079724442031038 1.304632177481986 >10 4.587815776828264 28.394213468845276 >50 0.8955370931544993 18.012351487420375 >100 0.33199452722014683 12.99161489840455 >500 5.675120122990984E-4 0.10607713485368256 >1k 2.837560061495492E-4 0.09627917048933479 >5k 0.0 0.0 >10k+ 2.837560061495492E-4 1.7689779297813353 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21846 1.7601134413496942 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04294335183737925 0.0 2 0.0 0.0 0.0 0.152517382792043 0.0 3 0.0 0.0 0.0 0.20867407365630816 0.0 4 0.0 0.0 0.0 0.34137144790802226 0.0 5 0.0 0.0 0.0 0.5860599273266354 0.0 6 0.0 0.0 0.0 0.8993127452323211 0.0 7 0.0 0.0 0.0 1.1189442219840957 0.0 8 0.0 0.0 0.0 1.7278857851865579 0.0 9 0.0 0.0 0.0 2.0311480296816713 0.0 10 8.056914040784099E-5 0.0 0.0 2.510695553389141 0.0 11 8.056914040784099E-5 0.0 0.0 2.8251569084009445 0.0 12 8.056914040784099E-5 0.0 0.0 3.127855168913203 0.0 13 1.6113828081568197E-4 0.0 0.0 3.2462112361723214 0.0 14 1.6113828081568197E-4 0.0 0.0 3.290524263396634 0.0 15 1.6113828081568197E-4 0.0 0.0 3.3490174593327264 0.0 16 1.6113828081568197E-4 0.0 0.0 3.4786532062489424 0.0 17 1.6113828081568197E-4 0.0 0.0 3.641161162451558 0.0 18 2.4170742122352296E-4 0.0 0.0 3.8929397262260608 0.0 19 3.2227656163136395E-4 0.0 0.0 3.9965516407905444 0.0 20 3.2227656163136395E-4 0.0 0.0 4.119419579912502 0.0 21 3.2227656163136395E-4 0.0 0.0 4.2577567939927645 0.0 22 3.2227656163136395E-4 0.0 0.0 4.405923443202784 0.0 23 3.2227656163136395E-4 0.0 0.0 4.561019038487879 0.0 24 4.0284570203920496E-4 0.0 0.0 4.6818727490996395 0.0 25 4.834148424470459E-4 0.0 0.0 4.77404384572621 0.0 26 4.834148424470459E-4 0.0 0.0 4.874755271236011 0.0 27 4.834148424470459E-4 0.0 0.0 4.979172877204573 0.0 28 6.445531232627279E-4 0.0 0.0 5.085685280823739 8.056914040784099E-5 29 6.445531232627279E-4 0.0 0.0 5.206941837137539 8.056914040784099E-5 30 6.445531232627279E-4 0.0 0.0 5.3721085749736135 8.056914040784099E-5 31 6.445531232627279E-4 0.0 0.0 5.507948145701233 8.056914040784099E-5 32 6.445531232627279E-4 0.0 0.0 5.619214128604462 8.056914040784099E-5 33 7.251222636705689E-4 0.0 0.0 5.741276376322341 8.056914040784099E-5 34 8.056914040784099E-4 0.0 0.0 5.873732043152832 8.056914040784099E-5 35 8.862605444862508E-4 0.0 0.0 6.030841866948122 8.056914040784099E-5 36 8.862605444862508E-4 0.0 0.0 6.167728836501043 8.056914040784099E-5 37 8.862605444862508E-4 0.0 0.0 6.303084992386216 8.056914040784099E-5 38 8.862605444862508E-4 0.0 0.0 6.4572943271268235 8.056914040784099E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACACG 20 7.856724E-4 44.000004 1 CGTGCAT 20 7.856724E-4 44.000004 37 ATACCGG 40 8.312782E-9 44.000004 2 ATCGAGT 20 7.856724E-4 44.000004 12 ATCGTAG 30 2.5278805E-6 44.0 1 ATCCGGG 30 2.5278805E-6 44.0 3 ACGATGC 25 4.4430453E-5 44.0 28 ACGCTAG 25 4.4430453E-5 44.0 1 CGTTTTT 17570 0.0 43.323845 1 TATGGGC 235 0.0 41.19149 4 ACCCGCT 220 0.0 41.0 34 ATTAACG 70 0.0 40.857143 1 TACGCGG 70 0.0 40.857143 2 CGATGCG 55 7.8216544E-11 40.0 10 GTTTTTT 19400 0.0 39.702065 2 CTACGGG 190 0.0 39.36842 3 AGGGCGA 825 0.0 39.2 6 TGCGGAT 45 2.3512257E-8 39.11111 4 TAACGGG 310 0.0 39.032257 3 CGGTCTA 85 0.0 38.823532 31 >>END_MODULE