##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545979_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1224998 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.99944652970862 31.0 28.0 33.0 25.0 33.0 2 28.678670495788566 31.0 28.0 33.0 16.0 33.0 3 28.072200117877742 31.0 26.0 33.0 16.0 34.0 4 31.97174934163158 35.0 32.0 35.0 25.0 37.0 5 33.60719772603711 35.0 33.0 35.0 28.0 37.0 6 33.492524069427056 35.0 33.0 37.0 28.0 37.0 7 34.28894985950998 35.0 33.0 37.0 31.0 37.0 8 34.78115147943099 35.0 35.0 37.0 32.0 37.0 9 36.70413421083136 39.0 37.0 39.0 32.0 39.0 10 36.4139933289687 39.0 35.0 39.0 32.0 39.0 11 36.39971330565437 39.0 35.0 39.0 32.0 39.0 12 35.254666538231085 37.0 34.0 39.0 30.0 39.0 13 35.246026524124936 37.0 34.0 39.0 27.0 39.0 14 35.988287327816046 38.0 34.0 40.0 29.0 41.0 15 36.58726789758024 38.0 35.0 40.0 31.0 41.0 16 36.21985586915244 38.0 34.0 40.0 31.0 41.0 17 35.8354903436577 37.0 34.0 40.0 30.0 41.0 18 35.46537300469062 37.0 34.0 39.0 29.0 40.0 19 34.86569773991468 37.0 33.0 39.0 27.0 40.0 20 35.326503390209616 35.0 34.0 39.0 30.0 40.0 21 35.41169291704966 35.0 34.0 39.0 30.0 40.0 22 35.744641215740764 36.0 34.0 40.0 31.0 41.0 23 36.10599527509433 36.0 35.0 40.0 32.0 41.0 24 35.68250233877933 35.0 34.0 40.0 31.0 41.0 25 35.33451564818881 35.0 34.0 39.0 30.0 41.0 26 35.45755503274291 35.0 34.0 40.0 30.0 41.0 27 35.79325598898937 36.0 35.0 40.0 31.0 41.0 28 35.7595408319034 36.0 35.0 40.0 31.0 41.0 29 35.92092313620104 36.0 35.0 40.0 31.0 41.0 30 35.569236031405765 36.0 35.0 40.0 30.0 41.0 31 34.82214011777978 35.0 34.0 39.0 29.0 41.0 32 34.74593917704355 35.0 34.0 40.0 27.0 41.0 33 34.36132140623903 36.0 34.0 40.0 24.0 41.0 34 33.87465612188755 36.0 34.0 40.0 21.0 41.0 35 33.50913634144709 36.0 33.0 40.0 18.0 41.0 36 33.085245037134754 35.0 33.0 40.0 15.0 41.0 37 32.96947995017135 35.0 33.0 40.0 15.0 41.0 38 32.838141776558004 35.0 33.0 40.0 15.0 41.0 39 32.61142956968093 35.0 32.0 40.0 12.0 41.0 40 32.46002442452967 35.0 32.0 39.0 12.0 40.0 41 32.185961936264384 35.0 31.0 39.0 10.0 40.0 42 32.36546998444079 35.0 32.0 39.0 10.0 40.0 43 32.15212841163822 35.0 32.0 39.0 10.0 40.0 44 31.974128937353367 35.0 31.0 39.0 10.0 40.0 45 31.919132929196618 35.0 31.0 39.0 10.0 40.0 46 31.739904065149496 35.0 31.0 39.0 10.0 40.0 47 31.740431412949246 35.0 31.0 39.0 10.0 40.0 48 31.74502325718083 35.0 31.0 39.0 10.0 40.0 49 31.81555806621725 35.0 31.0 39.0 10.0 40.0 50 31.866969578725843 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 1.0 12 9.0 13 18.0 14 50.0 15 110.0 16 322.0 17 655.0 18 1408.0 19 2489.0 20 3973.0 21 5687.0 22 8303.0 23 12130.0 24 17635.0 25 27004.0 26 38494.0 27 43146.0 28 39108.0 29 36550.0 30 38573.0 31 46505.0 32 61575.0 33 95235.0 34 155993.0 35 109275.0 36 108740.0 37 156571.0 38 176863.0 39 38572.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.750164490064474 22.18036274344938 27.599065467861987 24.47040729862416 2 38.64626717757906 20.102400167183944 29.149108814871532 12.102223840365452 3 26.084695648482693 18.71513259613485 42.481457112583044 12.718714642799418 4 23.57318134396954 24.587305448661954 37.97377628371638 13.86573692365212 5 19.788767002068575 29.17335375241429 38.464879126333265 12.573000119183869 6 17.97758037155979 35.91393618601826 35.73058894790032 10.377894494521623 7 75.08061237651 4.5884156545561705 17.92802927025187 2.402942698681957 8 76.51457390134514 3.2186174997836727 17.549987836714838 2.7168207621563463 9 73.13032347807915 4.867436518263704 18.951296247014284 3.0509437566428677 10 44.048398446364814 23.562079285027405 23.514242472232606 8.875279796375178 11 37.94757215930149 18.843051172328444 31.965848107507117 11.243528560862956 12 34.73491385292057 19.607623849181792 33.25278898414528 12.40467331375235 13 19.04933722340771 34.72805669886808 33.32862584265443 12.89398023506977 14 13.746716321169503 35.598915263535126 36.819080520947786 13.835287894347584 15 12.829000537143735 21.11334059320913 52.51780002906127 13.539858840585861 16 14.727697514608188 17.505089804228252 50.653552087431976 17.11366059373158 17 15.166228842822601 18.193499091427086 37.22381587561775 29.416456190132557 18 19.246317136844304 20.773013506960826 41.73459875036531 18.246070605829562 19 24.73791793945786 21.89007655522703 34.912056999276736 18.459948506038376 20 26.329185843568727 21.301014369003052 34.73573018078397 17.634069606644257 21 19.84876710002792 25.102653228821598 37.04748905712499 18.001090614025493 22 19.9843591581374 22.009586954427682 34.74217917090477 23.26387471653015 23 16.67578232780788 26.49457386869203 34.90895495339584 21.920688850104245 24 16.64696595423013 21.224687713775857 45.97240158759443 16.155944744399584 25 15.02933066013169 22.599955265233085 43.14709085239323 19.223623222241994 26 14.47398281466582 29.925436612957736 36.70716197087669 18.893418601499757 27 15.150718613418142 30.18029417190885 37.37018346152402 17.298803753148984 28 13.478960781976786 25.048122527546983 45.005379600619754 16.467537089856474 29 14.3379009598383 21.40142269620032 43.90186759488587 20.358808749075507 30 17.39635493282438 27.021431871725504 38.26438900308409 17.317824192366025 31 24.524284937608062 24.0436310916426 33.86944305215192 17.56264091859742 32 26.122001831839725 23.02118044274358 34.17491293863337 16.681904786783324 33 24.519305337641367 24.924122325097674 32.43066519292277 18.125907144338193 34 18.290642107170786 25.644531664541493 33.7204632170828 22.344363011204916 35 18.70435706833807 24.746326116450803 35.783078829516455 20.766237985694673 36 27.179064782146583 23.82028378821843 30.847723833018502 18.152927596616482 37 19.02370452849719 29.873763059204993 32.899237386510016 18.203295025787796 38 19.74084855648744 29.467721579953597 29.994334684628054 20.797095178930906 39 19.48974610570793 28.831067479293843 31.865358147523505 19.813828267474722 40 22.667955376253676 25.001836737692635 29.93572234403648 22.39448554201721 41 17.193905622703056 23.23056853970374 32.16478720781585 27.410738629777352 42 21.15219779950661 23.408038217205252 29.046414769656764 26.393349213631367 43 21.04680987234265 24.614489166512925 29.917273334323813 24.421427626820616 44 19.345664237819165 28.23514813901737 30.568458070951955 21.850729552211515 45 17.07512991857946 33.786422508444915 27.323309915608025 21.815137657367604 46 20.573666242720396 29.6684566015618 29.46110932426012 20.296767831457686 47 19.938563165001085 25.805348253629802 30.806499275917187 23.449589305451926 48 20.969503623679387 23.031547806608664 33.83099400978614 22.16795455992581 49 20.64664595370768 23.19465011371447 33.742748967753414 22.415954964824433 50 19.126643472070974 29.58984422831711 30.721029748619998 20.56248255099192 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 463.0 1 776.0 2 1089.0 3 17221.5 4 33354.0 5 24542.5 6 15731.0 7 16159.5 8 16588.0 9 17664.5 10 18741.0 11 19132.5 12 19524.0 13 18444.0 14 17364.0 15 16276.0 16 15188.0 17 14120.0 18 13052.0 19 11818.5 20 10585.0 21 10158.5 22 9732.0 23 9459.0 24 9186.0 25 9096.0 26 9006.0 27 9643.0 28 10280.0 29 12712.5 30 15145.0 31 17812.0 32 20479.0 33 23093.0 34 25707.0 35 30051.5 36 34396.0 37 36976.0 38 39556.0 39 47410.5 40 55265.0 41 72820.5 42 90376.0 43 103789.5 44 117203.0 45 118842.5 46 120482.0 47 113012.5 48 105543.0 49 99086.5 50 92630.0 51 84193.0 52 75756.0 53 67086.0 54 58416.0 55 51511.5 56 44607.0 57 40308.0 58 36009.0 59 31364.0 60 26719.0 61 23380.5 62 20042.0 63 17853.5 64 15665.0 65 13146.5 66 10628.0 67 8595.5 68 6563.0 69 5708.0 70 4853.0 71 4046.5 72 3240.0 73 2823.5 74 2407.0 75 1962.0 76 1517.0 77 1264.0 78 1011.0 79 738.5 80 466.0 81 338.0 82 210.0 83 159.0 84 108.0 85 77.0 86 46.0 87 33.0 88 20.0 89 22.0 90 24.0 91 23.5 92 23.0 93 12.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1224998.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.056765216973563 #Duplication Level Percentage of deduplicated Percentage of total 1 77.85609932295023 21.843902994133888 2 7.229315693224406 4.0566242616835915 3 2.926595812723039 2.463324348076447 4 1.8494370598924261 2.075568854918867 5 1.3219857147425118 1.854532140936182 6 0.9506359811145729 1.6003062317363328 7 0.7591460170973359 1.4909427096970385 8 0.6510320857859999 1.4612683503691513 9 0.5180136640928243 1.3080408977372922 >10 4.667377748948532 28.527148865405326 >50 0.9270682149475444 18.180984712314153 >100 0.34182812524658934 13.111332915572488 >500 8.787355404519036E-4 0.14866649478000468 >1k 2.9291184681730115E-4 0.10075462830308773 >5k 0.0 0.0 >10k+ 2.9291184681730115E-4 1.7766015943361753 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21618 1.7647375750817553 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1226 0.10008179605191193 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.163278633924301E-5 0.0 0.0 0.04122455710131771 0.0 2 8.163278633924301E-5 0.0 0.0 0.15371453667679458 0.0 3 8.163278633924301E-5 0.0 0.0 0.2135513690634597 0.0 4 8.163278633924301E-5 0.0 0.0 0.3413883124707142 0.0 5 8.163278633924301E-5 0.0 0.0 0.5826131961031773 0.0 6 8.163278633924301E-5 0.0 0.0 0.8844912399856979 0.0 7 8.163278633924301E-5 0.0 0.0 1.0960017893906766 0.0 8 8.163278633924301E-5 0.0 0.0 1.701227267309824 0.0 9 8.163278633924301E-5 0.0 0.0 1.9977991800802941 0.0 10 8.163278633924301E-5 0.0 0.0 2.4658815769495135 0.0 11 8.163278633924301E-5 0.0 0.0 2.769800440490515 0.0 12 8.163278633924301E-5 0.0 0.0 3.0483315074800124 0.0 13 1.6326557267848602E-4 0.0 0.0 3.1626990411412916 0.0 14 1.6326557267848602E-4 0.0 0.0 3.204168496601627 0.0 15 1.6326557267848602E-4 0.0 0.0 3.256331847072403 0.0 16 1.6326557267848602E-4 0.0 0.0 3.3826994003255515 0.0 17 2.44898359017729E-4 0.0 0.0 3.541720068114397 0.0 18 2.44898359017729E-4 0.0 0.0 3.7858837320550727 0.0 19 3.2653114535697203E-4 0.0 0.0 3.8881696133381443 0.0 20 4.89796718035458E-4 0.0 0.0 4.006455520743708 0.0 21 5.71429504374701E-4 0.0 0.0 4.140741454271762 0.0 22 6.530622907139441E-4 0.0 0.0 4.281068213988921 0.0 23 6.530622907139441E-4 0.0 0.0 4.434864383452054 0.0 24 6.530622907139441E-4 0.0 0.0 4.547191097454853 0.0 25 6.530622907139441E-4 0.0 0.0 4.638864716513823 0.0 26 6.530622907139441E-4 0.0 0.0 4.73184446015422 0.0 27 6.530622907139441E-4 0.0 0.0 4.832579318496847 0.0 28 7.34695077053187E-4 0.0 0.0 4.938865206310541 0.0 29 7.34695077053187E-4 0.0 0.0 5.057477644861461 0.0 30 7.34695077053187E-4 0.0 0.0 5.215600352000575 0.0 31 7.34695077053187E-4 0.0 0.0 5.348988324878897 0.0 32 7.34695077053187E-4 0.0 0.0 5.460661976590982 0.0 33 8.163278633924301E-4 0.0 0.0 5.576743798765386 0.0 34 8.163278633924301E-4 0.0 0.0 5.697886853692823 0.0 35 8.163278633924301E-4 0.0 0.0 5.855927928045597 0.0 36 8.163278633924301E-4 0.0 0.0 5.981968950153388 0.0 37 8.163278633924301E-4 0.0 0.0 6.112826306655195 0.0 38 8.163278633924301E-4 0.0 0.0 6.258295931911726 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 30 2.5278532E-6 44.0 12 ACGTTCA 20 7.8566844E-4 44.0 40 CTATCGT 30 2.5278532E-6 44.0 13 ATCGTAC 30 2.5278532E-6 44.0 15 CGTTACA 20 7.8566844E-4 44.0 37 GTTCGGA 20 7.8566844E-4 44.0 31 AACGCTC 20 7.8566844E-4 44.0 34 TGTTACG 25 4.4430133E-5 44.0 1 CGTACAT 50 2.7284841E-11 44.0 35 TCGTACT 30 2.5278532E-6 44.0 16 CCGAATC 20 7.8566844E-4 44.0 28 ATCGACG 25 4.4430133E-5 44.0 1 CGTTTTT 17105 0.0 43.215435 1 CGTTGAT 110 0.0 42.000004 25 TACGCGG 95 0.0 41.68421 2 CGACGGT 170 0.0 41.411766 28 CGGTCTA 175 0.0 40.22857 31 TCGTACA 55 7.8216544E-11 40.000004 34 ATCGTAG 50 1.3478711E-9 39.6 1 ACGTATG 50 1.3478711E-9 39.6 1 >>END_MODULE