##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545978_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1072059 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.07790429444648 28.0 25.0 30.0 16.0 33.0 2 26.15213435081465 30.0 25.0 31.0 10.0 33.0 3 26.357176237501854 30.0 25.0 31.0 16.0 33.0 4 27.81939613398143 32.0 19.0 35.0 10.0 35.0 5 31.17312666560329 33.0 30.0 35.0 19.0 37.0 6 29.823029329542496 33.0 28.0 35.0 17.0 36.0 7 29.883763860011435 32.0 28.0 35.0 17.0 35.0 8 32.45678456129747 33.0 32.0 35.0 28.0 35.0 9 27.132679264853895 31.0 23.0 34.0 10.0 35.0 10 31.93036670556378 34.0 31.0 37.0 18.0 38.0 11 33.84036326358904 35.0 32.0 37.0 27.0 39.0 12 33.240335653168344 35.0 31.0 39.0 25.0 39.0 13 33.12326280549858 35.0 31.0 38.0 22.0 39.0 14 32.87684912863938 35.0 31.0 39.0 21.0 40.0 15 31.92327101400203 34.0 27.0 38.0 18.0 40.0 16 30.56146909824926 34.0 27.0 38.0 17.0 40.0 17 30.733360757197133 33.0 27.0 38.0 17.0 40.0 18 31.66055226438097 34.0 29.0 38.0 18.0 39.0 19 31.29381964985136 34.0 27.0 37.0 18.0 39.0 20 32.02694254700534 34.0 30.0 37.0 23.0 39.0 21 32.71002342221837 34.0 31.0 37.0 23.0 39.0 22 33.025416511591246 34.0 31.0 37.0 25.0 39.0 23 34.31557125120912 35.0 33.0 38.0 29.0 40.0 24 33.94645817067904 35.0 33.0 38.0 27.0 40.0 25 32.69674803345711 35.0 31.0 37.0 23.0 39.0 26 26.32747637956493 33.0 20.0 36.0 0.0 39.0 27 29.605816470921845 34.0 24.0 37.0 15.0 39.0 28 31.171299340801205 34.0 27.0 36.0 19.0 39.0 29 32.528414014527186 34.0 30.0 37.0 23.0 39.0 30 32.21629966261185 34.0 30.0 37.0 22.0 39.0 31 31.095371616674083 34.0 29.0 36.0 19.0 38.0 32 31.320126037839334 34.0 30.0 37.0 18.0 39.0 33 31.004618215975054 34.0 29.0 37.0 18.0 39.0 34 30.931756554443364 34.0 29.0 37.0 15.0 39.0 35 30.056417603881876 34.0 27.0 37.0 10.0 39.0 36 29.72320086860891 34.0 26.0 37.0 10.0 39.0 37 29.7146537643917 34.0 26.0 37.0 10.0 39.0 38 29.476943899542842 33.0 26.0 36.0 10.0 39.0 39 29.346310231060045 33.0 25.0 36.0 9.0 39.0 40 29.29446233836011 33.0 25.0 36.0 10.0 38.0 41 28.790372544794643 33.0 24.0 36.0 9.0 38.0 42 28.958260692741725 33.0 24.0 36.0 8.0 38.0 43 28.50913056091129 33.0 24.0 36.0 8.0 38.0 44 28.239930824702746 32.0 23.0 35.0 8.0 38.0 45 27.715291788978032 31.0 23.0 35.0 8.0 38.0 46 27.311404502923814 31.0 23.0 35.0 8.0 38.0 47 27.47512123866317 31.0 23.0 35.0 8.0 38.0 48 27.55302180197172 31.0 23.0 35.0 8.0 37.0 49 27.402415352140135 31.0 23.0 35.0 8.0 38.0 50 29.140011883674312 34.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 10.0 12 49.0 13 145.0 14 305.0 15 830.0 16 1599.0 17 2925.0 18 5049.0 19 8034.0 20 11867.0 21 16898.0 22 22521.0 23 29526.0 24 38154.0 25 47417.0 26 55199.0 27 59507.0 28 64612.0 29 74999.0 30 89833.0 31 104944.0 32 114143.0 33 111820.0 34 95911.0 35 72235.0 36 35908.0 37 7411.0 38 201.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.806712130582365 23.00461075369919 27.43543032612944 25.753246789589006 2 38.5011459257373 17.36154446723548 30.89046405095242 13.246845556074804 3 27.16268414331674 14.367865947676387 44.41723823035859 14.052211678648282 4 24.88864885234861 24.414980891909867 36.94320928232494 13.753160973416575 5 18.890937905469755 29.584192661038244 39.30893728796643 12.215932145525572 6 17.967294710459033 34.14401632745959 37.12855355908584 10.760135402995544 7 77.10331241097738 3.2286469308125767 18.016172617365275 1.6518680408447668 8 79.16579218121392 1.9261999572784707 17.27125092928654 1.6367569322210813 9 67.41522621422888 3.0971243187175332 17.285709088772165 12.201940378281419 10 45.31159199260488 23.274465304614765 23.630229306409444 7.783713396370909 11 39.29895649399893 18.237335818271198 32.16222241499768 10.301485272732192 12 35.5323727518728 19.510679915937462 33.62286963683901 11.334077695350722 13 18.465121789006016 35.82536035796537 33.465882008359614 12.243635844668997 14 13.035476592239792 35.99876499334459 37.51230109536882 13.453457319046805 15 11.314302664312319 19.56067716422324 52.987009110506044 16.138011060958398 16 13.064672746555928 15.612200447923108 50.88880369457278 20.434323110948185 17 14.302384476973748 17.093368928389204 38.14211717825231 30.46212941638473 18 18.735256175266475 20.20019420572935 43.029721311980026 18.03482830702415 19 25.52508770506101 20.81891015326582 35.702419363113414 17.953582778559763 20 26.902903664816957 20.797456110158116 35.39599966046645 16.90364056455848 21 19.576907614226453 24.79051992474295 37.81918719025725 17.813385270773345 22 19.771673014265073 21.60058354997253 34.98249629917756 23.645247136584832 23 15.957237428163934 26.436418144896876 35.777788349335246 21.82855607760394 24 15.704825947079403 20.511464387687617 48.32028834233937 15.463421322893609 25 14.256957872654397 21.369439555099113 45.24825592621301 19.125346646033474 26 11.358889762597022 41.68324691085099 30.61818426038119 16.3396790661708 27 14.169555966602584 31.267215703613328 38.155829110151586 16.407399219632502 28 12.630368291297401 24.80432513509051 46.72196213081556 15.843344442796525 29 13.3957179595526 21.165905980920826 45.33677717364436 20.101598885882215 30 16.911662511111793 26.990212292420473 39.19233922759848 16.90578596886925 31 25.12884085670658 23.780314329715065 34.505563593048514 16.58528122052984 32 26.594152000962634 22.0572748328217 34.99443594055924 16.354137225656423 33 24.82503295061186 24.478783350543207 32.88345137720965 17.812732321635284 34 17.690444275921383 25.082481467904284 33.97042513518379 23.25664912099054 35 18.515398872636673 24.191579008244883 36.041579801111695 21.251442318006752 36 27.458096989064966 23.341998901179878 30.743084102647334 18.45682000710782 37 18.309533337251025 30.543561501745707 32.45707559005614 18.689829570947122 38 18.94158810289359 30.36157524912342 29.761421712797524 20.93541493518547 39 19.082998230507837 29.09466736438946 31.607868596784318 20.214465808318387 40 22.69968350622494 24.492495282442476 29.781756414525695 23.026064796806892 41 16.509912234308 22.495683539805178 32.149816381374535 28.844587844512287 42 20.350185950586674 22.65817459673395 28.353383535794208 28.638255916885168 43 20.49653983596052 23.819957670240164 29.96215693352698 25.721345560272336 44 18.366806304503765 27.951913094335296 30.741405090578038 22.939875510582905 45 16.27755561960676 35.023165702633904 26.508708942325004 22.190569735434337 46 19.674476871142353 29.639413502428503 28.87966054107097 21.806449085358175 47 19.267129887440895 25.328923128297976 30.146381868908335 25.257565115352794 48 20.135925354854535 22.50752990273856 34.69277343877529 22.66377130363161 49 20.203179116074768 23.13156272182781 33.24257340314292 23.4226847589545 50 18.59393932610052 30.450096496554764 30.292829032730474 20.66313514461424 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 292.0 1 468.5 2 645.0 3 9876.5 4 19108.0 5 15815.0 6 12522.0 7 12817.0 8 13112.0 9 14475.5 10 15839.0 11 16737.5 12 17636.0 13 17565.5 14 17495.0 15 16947.5 16 16400.0 17 15810.5 18 15221.0 19 14127.5 20 13034.0 21 12397.0 22 11760.0 23 11249.5 24 10739.0 25 10286.5 26 9834.0 27 10163.0 28 10492.0 29 12440.0 30 14388.0 31 16766.0 32 19144.0 33 21249.5 34 23355.0 35 26474.5 36 29594.0 37 31723.0 38 33852.0 39 40362.0 40 46872.0 41 62025.5 42 77179.0 43 88794.5 44 100410.0 45 101618.5 46 102827.0 47 96505.0 48 90183.0 49 84112.5 50 78042.0 51 71526.0 52 65010.0 53 58170.5 54 51331.0 55 45605.0 56 39879.0 57 35831.5 58 31784.0 59 27756.5 60 23729.0 61 20866.0 62 18003.0 63 15790.5 64 13578.0 65 11582.0 66 9586.0 67 7844.5 68 6103.0 69 5307.0 70 4511.0 71 3838.0 72 3165.0 73 2671.0 74 2177.0 75 1787.0 76 1397.0 77 1137.5 78 878.0 79 695.0 80 512.0 81 368.0 82 224.0 83 158.0 84 92.0 85 69.5 86 47.0 87 42.0 88 37.0 89 28.5 90 20.0 91 17.0 92 14.0 93 9.0 94 4.0 95 2.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1072059.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.17289369728133 #Duplication Level Percentage of deduplicated Percentage of total 1 82.89682235106682 35.788956992050224 2 6.780843708939345 5.854972892478344 3 2.6156715144933003 3.3877832472667837 4 1.440189260457701 2.4870855138282617 5 0.9381280327132452 2.02508509153843 6 0.6894930174430829 1.7860445248252779 7 0.5240751742091012 1.5838089249859602 8 0.39964252556886365 1.3802979418638068 9 0.33068162295465 1.2848834299919014 >10 2.9008487617979712 26.248817870845574 >50 0.39357246770856824 11.566008716470034 >100 0.08933001800406504 5.228567779998229 >500 2.338482144261689E-4 0.05270061941619861 >1k 2.338482144261689E-4 0.207066993146788 >5k 0.0 0.0 >10k+ 2.338482144261689E-4 1.1179194612941898 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11073 1.0328722579634142 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 2051 0.19131409745172606 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03040877414396036 0.0 2 0.0 0.0 0.0 0.12378050088661165 0.0 3 0.0 0.0 0.0 0.17144578796502805 0.0 4 0.0 0.0 0.0 0.25940736470660664 0.0 5 9.327844829435693E-5 0.0 0.0 0.42525644577397326 0.0 6 9.327844829435693E-5 0.0 0.0 0.608362039775796 0.0 7 9.327844829435693E-5 0.0 0.0 0.7344745018697665 0.0 8 9.327844829435693E-5 0.0 0.0 1.0997529053904682 0.0 9 9.327844829435693E-5 0.0 0.0 1.3248338011247516 0.0 10 9.327844829435693E-5 0.0 0.0 1.6362905399796093 0.0 11 9.327844829435693E-5 0.0 0.0 1.8503645788151586 0.0 12 9.327844829435693E-5 0.0 0.0 2.0493275090270218 0.0 13 9.327844829435693E-5 0.0 0.0 2.131412543526056 0.0 14 9.327844829435693E-5 0.0 0.0 2.159955748704129 0.0 15 9.327844829435693E-5 0.0 0.0 2.196334343538928 0.0 16 9.327844829435693E-5 0.0 0.0 2.268345305622172 0.0 17 9.327844829435693E-5 0.0 0.0 2.3874618840940656 0.0 18 9.327844829435693E-5 0.0 0.0 2.548180650505243 0.0 19 9.327844829435693E-5 0.0 0.0 2.6052670608613893 0.0 20 9.327844829435693E-5 0.0 0.0 2.683154565187177 0.0 21 9.327844829435693E-5 0.0 0.0 2.7637471445135016 0.0 22 9.327844829435693E-5 0.0 0.0 2.8462985712540076 0.0 23 9.327844829435693E-5 0.0 0.0 2.938644235065421 0.0 24 9.327844829435693E-5 0.0 0.0 3.0015139092158174 0.0 25 9.327844829435693E-5 0.0 0.0 3.054682624743601 0.0 26 9.327844829435693E-5 0.0 0.0 3.1105564152719207 0.0 27 9.327844829435693E-5 0.0 0.0 3.1840598325278737 0.0 28 9.327844829435693E-5 0.0 0.0 3.2559775161628233 0.0 29 9.327844829435693E-5 0.0 0.0 3.3444054851458733 0.0 30 9.327844829435693E-5 0.0 0.0 3.4541942187883317 0.0 31 9.327844829435693E-5 0.0 0.0 3.548312173117338 0.0 32 9.327844829435693E-5 0.0 0.0 3.63207621968567 0.0 33 9.327844829435693E-5 0.0 0.0 3.725727781773205 0.0 34 9.327844829435693E-5 0.0 0.0 3.8218045835163923 0.0 35 9.327844829435693E-5 0.0 0.0 3.9446522999200604 0.0 36 9.327844829435693E-5 0.0 0.0 4.046419087009204 0.0 37 9.327844829435693E-5 0.0 0.0 4.146227026684166 0.0 38 9.327844829435693E-5 0.0 0.0 4.2560157603266235 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGCACG 45 4.802132E-10 44.000004 1 GATCGAA 30 2.5275567E-6 44.0 9 CTATCGT 20 7.8562455E-4 44.0 13 AGGCGTA 30 2.5275567E-6 44.0 6 TCGTCGG 20 7.8562455E-4 44.0 2 GCGATAA 80 0.0 44.0 9 TCGTAAT 30 2.5275567E-6 44.0 33 CGTAATC 30 2.5275567E-6 44.0 34 GCGTACA 20 7.8562455E-4 44.0 8 GCGTAAG 35 1.4459692E-7 44.0 1 CGTTTTT 16060 0.0 43.39726 1 GCGGAAT 580 0.0 42.48276 8 AGGCGAT 135 0.0 40.74074 6 CGGAATT 590 0.0 40.64407 9 GTAGGGT 300 0.0 40.333336 4 ACGGGAT 395 0.0 40.101265 5 TACGGGA 315 0.0 39.80952 4 GTTTTTT 17745 0.0 39.66075 2 TACGAAG 100 0.0 39.600002 1 TAACGGG 290 0.0 39.448277 3 >>END_MODULE