##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545977_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1101227 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.073850350563507 31.0 28.0 33.0 25.0 33.0 2 28.86509139350924 31.0 28.0 33.0 16.0 33.0 3 28.255984460969447 31.0 27.0 33.0 16.0 34.0 4 32.11262528070961 35.0 32.0 35.0 25.0 37.0 5 33.65745118853788 35.0 33.0 35.0 28.0 37.0 6 33.5245349051558 35.0 33.0 37.0 28.0 37.0 7 34.249024043180924 35.0 33.0 37.0 30.0 37.0 8 34.679462090922215 35.0 35.0 37.0 32.0 37.0 9 36.483843930452124 39.0 37.0 39.0 32.0 39.0 10 36.240388221502016 38.0 35.0 39.0 31.0 39.0 11 36.36586280576121 38.0 35.0 39.0 32.0 39.0 12 35.25574654453623 37.0 34.0 39.0 29.0 39.0 13 35.596409278014434 37.0 35.0 39.0 30.0 39.0 14 36.31121558043891 38.0 35.0 40.0 30.0 41.0 15 36.822419900710756 38.0 35.0 40.0 31.0 41.0 16 36.42872995304329 38.0 35.0 40.0 31.0 41.0 17 36.0016999219961 38.0 34.0 40.0 30.0 41.0 18 35.583472798977866 38.0 34.0 39.0 29.0 40.0 19 34.98598290815608 37.0 33.0 39.0 27.0 40.0 20 35.36386866649655 36.0 34.0 39.0 30.0 40.0 21 35.56391915563276 36.0 34.0 39.0 30.0 40.0 22 35.87175486979524 36.0 34.0 40.0 31.0 41.0 23 36.16592673445166 37.0 35.0 40.0 31.0 41.0 24 35.83127275302912 36.0 35.0 40.0 31.0 41.0 25 35.49642171868289 36.0 34.0 40.0 30.0 41.0 26 35.57324965697354 36.0 34.0 40.0 30.0 41.0 27 35.87456718732832 37.0 35.0 40.0 31.0 41.0 28 35.79377639669205 36.0 35.0 40.0 31.0 41.0 29 35.88626868029934 37.0 35.0 40.0 31.0 41.0 30 35.51470314476489 36.0 35.0 40.0 30.0 41.0 31 34.816846118012 36.0 34.0 40.0 27.0 41.0 32 34.689776040725484 36.0 34.0 40.0 26.0 41.0 33 34.27000336896934 36.0 33.0 40.0 23.0 41.0 34 33.80952337710572 36.0 33.0 40.0 20.0 41.0 35 33.44869677187356 36.0 33.0 40.0 17.0 41.0 36 33.001665415032505 36.0 33.0 40.0 15.0 41.0 37 32.89553743233684 36.0 33.0 40.0 15.0 41.0 38 32.698707895828925 35.0 32.0 40.0 12.0 41.0 39 32.48429796944681 35.0 32.0 40.0 11.0 41.0 40 32.29994451643485 35.0 31.0 39.0 10.0 40.0 41 31.990305359385484 35.0 31.0 39.0 10.0 40.0 42 32.11460852303839 35.0 31.0 39.0 10.0 40.0 43 31.912003610518084 35.0 31.0 39.0 10.0 40.0 44 31.658622609144164 35.0 31.0 39.0 10.0 40.0 45 31.64229990728524 35.0 30.0 39.0 10.0 40.0 46 31.47132335113469 35.0 30.0 39.0 10.0 40.0 47 31.432622883383715 35.0 30.0 38.0 10.0 40.0 48 31.42088325113714 35.0 30.0 38.0 10.0 40.0 49 31.39380981396206 35.0 30.0 38.0 10.0 40.0 50 31.532822932964773 35.0 30.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 6.0 12 4.0 13 27.0 14 75.0 15 157.0 16 330.0 17 794.0 18 1475.0 19 2396.0 20 3767.0 21 5472.0 22 7706.0 23 10951.0 24 16037.0 25 24440.0 26 34872.0 27 39492.0 28 36943.0 29 34694.0 30 36336.0 31 42685.0 32 54839.0 33 80463.0 34 121537.0 35 100984.0 36 107753.0 37 146449.0 38 157542.0 39 32996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.76450904309466 21.25946784813667 26.278596510982748 25.69742659778592 2 41.44713124541988 19.582338609569145 26.96637478013162 12.004155364879358 3 27.352580349010697 18.28124446639975 41.505429852337436 12.860745332252115 4 24.47006838735338 23.826059477292148 37.96319923140279 13.740672903951683 5 20.21508735256219 27.786278396733827 38.64380368443563 13.354830566268353 6 18.134771486714367 34.882453844665996 36.80467333256449 10.178101336055146 7 72.90685753255232 4.8668439840287245 19.72862997365666 2.4976685097622924 8 73.92899011738724 3.702960425053145 19.557094041464655 2.8109554160949557 9 69.96868039014663 5.343948159643743 20.78881102624618 3.8985604239634513 10 39.981493370576636 22.143118539592656 26.121771442218545 11.753616647612164 11 34.05410510276264 20.894420496409914 31.84565943261471 13.205814968212731 12 30.327716265583753 19.686767578346696 36.230495619885815 13.755020536183729 13 20.49205113932005 28.500572543172296 36.159756344513895 14.847619972993762 14 15.99633862954686 30.62184272634071 38.41315187513564 14.968666768976787 15 15.806096290773835 20.714893477911456 48.296854327037025 15.182155904277684 16 18.116791542524837 17.962872323326618 46.74567550559512 17.174660628553422 17 18.136587642693105 18.19579432760003 37.420895056151004 26.24672297355586 18 20.529282336884222 20.762476764554446 40.70677526068649 18.001465637874844 19 24.530183150249677 21.581199879770473 35.49213740672904 18.39647956325081 20 25.712591500208404 21.37197871101962 35.10393406627335 17.81149572249863 21 21.63532132793693 23.273857251956226 37.39628614263907 17.69453527746777 22 21.329571468916036 20.824044452233736 35.777364703190166 22.06901937566006 23 18.853061176306067 24.386888443527084 35.42784548508164 21.332204895085212 24 18.84134697024319 21.589100158277994 42.21654572581311 17.353007145665696 25 18.336001569158768 21.78379207919893 40.21959141938946 19.660614932252845 26 16.891794334864656 25.96694414503095 36.78033684244938 20.360924677655014 27 17.514645027773565 26.03913634518587 37.81209505397162 18.63412357306895 28 16.98260213380166 23.582785383939914 41.80037358328483 17.6342388989736 29 17.653217728951436 21.99165113096573 40.97138918678892 19.383741953293917 30 19.638730252709024 24.156690673221778 38.561350203000835 17.643228871068363 31 24.927648886196945 22.90308900889644 34.37828894496775 17.79097315993887 32 25.274534678136295 22.42062717314414 34.601131283559155 17.703706865160406 33 24.16786003249103 23.905607109160965 32.961505665952615 18.965027192395393 34 19.886272312611297 24.810506825568208 34.39172849921043 20.91149236261007 35 21.31758483945635 24.03873134240261 34.290750226792476 20.35293359134856 36 26.055572556793464 24.129902372535366 30.8311547028905 18.983370367780665 37 21.302601552631746 27.940833270524607 31.56560818069299 19.190956996150657 38 21.261647235311155 28.042083966339366 29.619233818277245 21.077034980072227 39 21.376609908765403 27.318890655605067 30.197043842913406 21.107455592716125 40 23.001161431748404 24.470159195152316 30.478093980623434 22.050585392475845 41 19.635097940751546 23.74233468667223 31.408419880733035 25.214147491843192 42 21.654572581311573 24.85890738240163 29.331373095646946 24.15514694063985 43 21.2470271796823 24.981225487569773 30.46456361858182 23.307183714166108 44 20.443650582486626 26.82762046335587 30.79119927135822 21.93752968279928 45 19.332526354693446 30.062375877089824 28.87515471378744 21.729943054429288 46 21.545330799190356 27.074436060866653 30.59387392426811 20.786359215674878 47 21.312772026112693 25.518262810483215 31.330597597044026 21.83836756636007 48 21.70342717713968 24.195011564373196 32.72894689287495 21.37261436561218 49 21.286619380018834 23.523851122429797 33.07546945361855 22.114060043932813 50 19.958736936163028 27.146265029825823 31.551169740662004 21.343828293349144 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 495.0 1 1015.5 2 1536.0 3 21643.5 4 41751.0 5 29070.5 6 16390.0 7 16349.0 8 16308.0 9 16738.5 10 17169.0 11 17098.5 12 17028.0 13 16148.5 14 15269.0 15 14272.0 16 13275.0 17 12330.5 18 11386.0 19 10606.5 20 9827.0 21 9295.5 22 8764.0 23 8630.0 24 8496.0 25 8225.5 26 7955.0 27 8447.5 28 8940.0 29 10540.0 30 12140.0 31 13849.0 32 15558.0 33 17609.0 34 19660.0 35 22436.0 36 25212.0 37 27302.5 38 29393.0 39 35744.0 40 42095.0 41 53139.5 42 64184.0 43 72703.0 44 81222.0 45 82854.0 46 84486.0 47 82455.5 48 80425.0 49 79767.0 50 79109.0 51 77028.0 52 74947.0 53 67194.0 54 59441.0 55 54923.0 56 50405.0 57 47377.5 58 44350.0 59 40398.0 60 36446.0 61 33648.0 62 30850.0 63 27484.5 64 24119.0 65 20519.0 66 16919.0 67 14526.0 68 12133.0 69 10416.0 70 8699.0 71 7473.0 72 6247.0 73 4934.5 74 3622.0 75 2958.0 76 2294.0 77 1808.0 78 1322.0 79 970.5 80 619.0 81 477.0 82 335.0 83 260.0 84 185.0 85 151.0 86 117.0 87 76.0 88 35.0 89 30.5 90 26.0 91 23.5 92 21.0 93 18.0 94 15.0 95 9.5 96 4.0 97 3.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1101227.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.4545330756072 #Duplication Level Percentage of deduplicated Percentage of total 1 76.3426175560276 24.776640065505287 2 7.251525905254723 4.706897746814238 3 3.3566022988291992 3.2681088098703426 4 2.1014362191956395 2.7280452512865527 5 1.561556888935557 2.5339799850700664 6 1.1822736802576301 2.3022084156204667 7 0.9418822547360085 2.139784415276009 8 0.7590805460457791 1.9708483750954169 9 0.6089707422299048 1.7787474986199763 >10 5.237588004283675 35.22858280028898 >50 0.5978082358013919 13.004689991321353 >100 0.05753503360135926 2.889080679913353 >500 5.613174007911319E-4 0.10201684723938208 >1k 2.8065870039556596E-4 0.11194527255107194 >5k 0.0 0.0 >10k+ 2.8065870039556596E-4 2.458423845527609 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26990 2.4509024933097354 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1229 0.11160278489357779 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024427297914054052 0.0 2 0.0 0.0 0.0 0.11296490187763286 0.0 3 0.0 0.0 0.0 0.16645069545152816 0.0 4 0.0 0.0 0.0 0.2519916420501858 0.0 5 0.0 0.0 0.0 0.45458384147864156 0.0 6 0.0 0.0 0.0 0.6848724195828835 0.0 7 0.0 0.0 0.0 0.8511414994365376 0.0 8 0.0 0.0 0.0 1.2378011073103001 0.0 9 0.0 0.0 0.0 1.4543777077750546 0.0 10 0.0 0.0 0.0 1.812886897978346 0.0 11 0.0 0.0 0.0 2.0826768686201844 0.0 12 0.0 0.0 0.0 2.3321258923001342 0.0 13 0.0 0.0 0.0 2.4366456688766256 0.0 14 9.08077989370039E-5 0.0 0.0 2.4801426045674506 0.0 15 9.08077989370039E-5 0.0 0.0 2.536261824310519 0.0 16 9.08077989370039E-5 0.0 0.0 2.648318648198782 0.0 17 9.08077989370039E-5 0.0 0.0 2.775721990107398 0.0 18 9.08077989370039E-5 0.0 0.0 2.97540833996987 0.0 19 9.08077989370039E-5 0.0 0.0 3.0568629356163624 0.0 20 1.816155978740078E-4 0.0 0.0 3.1543905116747046 0.0 21 1.816155978740078E-4 0.0 0.0 3.2575481712671412 0.0 22 1.816155978740078E-4 0.0 0.0 3.3657910676000498 0.0 23 1.816155978740078E-4 0.0 0.0 3.486202208990517 0.0 24 1.816155978740078E-4 0.0 0.0 3.579371010699883 0.0 25 1.816155978740078E-4 0.0 0.0 3.65855541137295 0.0 26 1.816155978740078E-4 0.0 0.0 3.7357420404694035 0.0 27 1.816155978740078E-4 0.0 0.0 3.8263682238085335 0.0 28 3.632311957480156E-4 0.0 0.0 3.906460702470971 0.0 29 3.632311957480156E-4 0.0 0.0 3.998449002794156 0.0 30 3.632311957480156E-4 0.0 0.0 4.121130339158048 0.0 31 3.632311957480156E-4 0.0 0.0 4.217023374835525 0.0 32 3.632311957480156E-4 0.0 0.0 4.306559864587411 0.0 33 3.632311957480156E-4 0.0 0.0 4.403451786053194 0.0 34 4.5403899468501955E-4 0.0 0.0 4.508879640619055 0.0 35 5.448467936220234E-4 0.0 0.0 4.63392197975531 0.0 36 6.356545925590274E-4 0.0 0.0 4.7325392494008955 0.0 37 6.356545925590274E-4 0.0 0.0 4.828250669480497 0.0 38 7.264623914960312E-4 0.0 0.0 4.945392730109233 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTAAG 40 8.312782E-9 44.0 1 ATCGCTA 20 7.8563386E-4 44.0 25 CGTTTTT 16965 0.0 43.403477 1 CGGTCTA 120 0.0 42.166664 31 TATACGG 90 0.0 41.555557 2 CGGGTAT 60 3.6379788E-12 40.333332 6 TGTAACG 60 3.6379788E-12 40.333332 1 TCGCCGT 55 7.8216544E-11 40.0 25 GTTTTTT 19145 0.0 39.414986 2 TCTAGCG 45 2.3508619E-8 39.11111 1 GTTAGCG 75 0.0 38.13333 1 TCACGAC 140 0.0 37.714287 25 CGACGGT 140 0.0 37.714287 28 CGTAAGG 210 0.0 37.714287 2 CGCATGG 135 0.0 37.48148 2 GGGTACC 625 0.0 36.960003 7 ACGTAGG 125 0.0 36.96 2 GCCAGTA 590 0.0 36.915253 25 GGGCGAT 1470 0.0 36.816326 7 AGGGTAC 360 0.0 36.666668 6 >>END_MODULE