##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545976_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1107378 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.032523673036668 31.0 28.0 33.0 25.0 33.0 2 28.82844791931933 31.0 28.0 33.0 16.0 33.0 3 28.234526963692616 31.0 27.0 33.0 16.0 34.0 4 32.09841084074273 35.0 32.0 35.0 25.0 37.0 5 33.68500457838245 35.0 33.0 35.0 28.0 37.0 6 33.604388925913284 35.0 33.0 37.0 28.0 37.0 7 34.307856937739416 35.0 35.0 37.0 31.0 37.0 8 34.714144582969865 35.0 35.0 37.0 32.0 37.0 9 36.586358045762154 39.0 37.0 39.0 32.0 39.0 10 36.24062695845502 38.0 35.0 39.0 31.0 39.0 11 36.41493419591142 39.0 35.0 39.0 32.0 39.0 12 35.19025752724002 37.0 34.0 39.0 29.0 39.0 13 35.57546655252317 37.0 35.0 39.0 30.0 39.0 14 36.305203823807226 38.0 35.0 40.0 30.0 41.0 15 36.84215958778303 38.0 35.0 40.0 31.0 41.0 16 36.445561497519364 38.0 35.0 40.0 31.0 41.0 17 36.03744791751326 38.0 34.0 40.0 30.0 41.0 18 35.65270846991723 38.0 34.0 39.0 29.0 40.0 19 35.05290244162337 37.0 33.0 39.0 27.0 41.0 20 35.333597019265326 35.0 34.0 39.0 30.0 40.0 21 35.45036473543812 36.0 34.0 39.0 30.0 40.0 22 35.83537057806819 36.0 34.0 40.0 31.0 41.0 23 36.18352450563403 37.0 35.0 40.0 31.0 41.0 24 35.72423147290266 36.0 35.0 40.0 31.0 41.0 25 35.409890750945024 36.0 34.0 40.0 30.0 41.0 26 35.541592843636046 36.0 34.0 40.0 30.0 41.0 27 35.8937481149165 37.0 35.0 40.0 31.0 41.0 28 35.79944607893601 36.0 35.0 40.0 31.0 41.0 29 35.9038485503595 37.0 35.0 40.0 31.0 41.0 30 35.55455228476636 36.0 35.0 40.0 30.0 41.0 31 34.85676706598831 36.0 34.0 40.0 28.0 41.0 32 34.77418189633531 36.0 34.0 40.0 26.0 41.0 33 34.37742396905122 36.0 34.0 40.0 23.0 41.0 34 33.84752993106238 36.0 33.0 40.0 20.0 41.0 35 33.51380468096711 36.0 33.0 40.0 18.0 41.0 36 33.05514828721539 36.0 33.0 40.0 15.0 41.0 37 32.94098582417205 36.0 33.0 40.0 15.0 41.0 38 32.79164296202381 36.0 32.0 40.0 13.0 41.0 39 32.533982976002775 35.0 32.0 40.0 12.0 41.0 40 32.31682225942723 35.0 31.0 39.0 10.0 40.0 41 32.01098179664035 35.0 31.0 39.0 10.0 40.0 42 32.13040804494942 35.0 31.0 39.0 10.0 40.0 43 31.948921687084265 35.0 31.0 39.0 10.0 40.0 44 31.68767033479083 35.0 31.0 39.0 10.0 40.0 45 31.657769072529884 35.0 30.0 39.0 10.0 40.0 46 31.479460491358868 35.0 30.0 38.0 10.0 40.0 47 31.446545804594276 35.0 30.0 38.0 10.0 40.0 48 31.441059872961176 35.0 30.0 38.0 10.0 40.0 49 31.472474620229047 35.0 30.0 38.0 10.0 40.0 50 31.625006998513605 35.0 30.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 0.0 11 2.0 12 13.0 13 26.0 14 50.0 15 132.0 16 330.0 17 710.0 18 1374.0 19 2294.0 20 3636.0 21 5526.0 22 7724.0 23 10890.0 24 15896.0 25 23891.0 26 34349.0 27 39418.0 28 37289.0 29 34937.0 30 36109.0 31 43113.0 32 54722.0 33 81058.0 34 122719.0 35 102661.0 36 109590.0 37 151497.0 38 158054.0 39 29364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.921701532809934 21.220305984045197 26.185457901457315 25.672534581687557 2 41.57126112312146 19.481875204311446 26.940665247097193 12.006198425469893 3 27.35768635461423 18.335834737551224 41.30540790949432 13.001070998340222 4 24.424541574782957 23.816167559767308 37.89717693506643 13.862113930383302 5 20.17368956219105 27.696414413145288 38.75108589840145 13.378810126262216 6 18.108721683110915 34.911114362033565 36.8319580125305 10.148205942325024 7 72.77153781274326 4.947542754145378 19.73084168188279 2.550077751228578 8 73.84903799786522 3.730072296903135 19.573171943094408 2.8477177621372287 9 69.92264610638824 5.366640839893876 20.86866453911853 3.842048514599351 10 39.91238763999284 22.019310479348515 26.060839207569593 12.007462673089044 11 33.95588498236374 20.830827413945375 31.88838860804531 13.32489899564557 12 30.36180960792069 19.35987530906339 36.1474582301617 14.13085685285422 13 20.608951956784406 28.3865130063989 36.16569951723802 14.83883551957868 14 16.030117990424227 30.719230470534903 38.292886439860645 14.957765099180225 15 15.788375784962316 20.70828569828911 48.28540931822738 15.21792919852119 16 18.086597349775776 17.928024576973716 46.740498727625074 17.24487934562543 17 18.133916332092564 18.2134736286977 37.417936784006905 26.23467325520283 18 20.509347305075593 20.787391477887407 40.67825078699414 18.025010430042858 19 24.43050159927324 21.64256468884157 35.46620937024214 18.460724341643054 20 25.585391799367514 21.251460657517125 35.08828963551741 18.074857907597945 21 21.599851179994545 23.219984503936324 37.464172125507275 17.71599219056185 22 21.353322894260135 20.672706158150152 35.892712334902804 22.081258612686906 23 18.790241453234575 24.318886595182494 35.427198300851195 21.463673650731728 24 18.859233251879665 21.555150996317426 42.16338052589089 17.42223522591202 25 18.32129588993099 21.734945068440947 40.18844513797457 19.755313903653494 26 16.954192696622112 25.99166680212177 36.761340752660786 20.292799748595332 27 17.60076505041639 25.93495626606272 37.716931345936075 18.74734733758482 28 16.985257066692675 23.583094480836717 41.71249564286089 17.719152809609724 29 17.595708059939785 22.009467408599413 40.96071982647299 19.434104704987817 30 19.598818109082895 24.22596439517491 38.48288479633874 17.692332699403458 31 24.90360111903975 22.890557695746168 34.39936498648158 17.8064761987325 32 25.127282644228078 22.446445567818756 34.70639655113249 17.71987523682067 33 24.11019543462124 23.987292505359505 33.00255197412266 18.899960085896595 34 19.93447585196744 24.715860347595854 34.49635083955072 20.853312960885983 35 21.260581301055286 24.024045989716246 34.342022326612955 20.373350382615513 36 26.110054561315106 23.955325101275264 30.913292480074556 19.021327857335073 37 21.30374632690915 27.980779824052853 31.570972152237086 19.144501696800912 38 21.349439848001314 27.9192832077213 29.675232847320427 21.056044096956956 39 21.39693943712084 27.342154169578954 30.244144275938297 21.01676211736191 40 22.980319276705877 24.48025877342696 30.479113726297612 22.06030822356955 41 19.74167809004694 23.83720825228603 31.342504546776258 25.07860911089077 42 21.759326986810283 24.840388738082208 29.374974037772105 24.025310237335397 43 21.31620819629792 24.980810527209318 30.42773109091927 23.27525018557349 44 20.499684841129227 26.85821824164829 30.79553684469079 21.84656007253169 45 19.289709566200518 30.04078101605775 28.99010094114205 21.67940847659968 46 21.60265058543695 27.03187168247879 30.62883676576562 20.736640966318635 47 21.269160124185237 25.59324819528652 31.358939765825223 21.77865191470302 48 21.715529837146846 24.319247808787967 32.60819702034897 21.35702533371622 49 21.34320891330693 23.559796203283792 33.05212854147364 22.044866341935634 50 19.992721545849747 27.134546649834114 31.466762027058508 21.40596977725763 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 465.0 1 966.0 2 1467.0 3 21994.0 4 42521.0 5 29399.0 6 16277.0 7 16308.5 8 16340.0 9 16843.5 10 17347.0 11 17086.5 12 16826.0 13 16037.5 14 15249.0 15 14284.0 16 13319.0 17 12362.0 18 11405.0 19 10486.0 20 9567.0 21 9020.0 22 8473.0 23 8636.0 24 8799.0 25 8366.0 26 7933.0 27 8450.5 28 8968.0 29 10463.5 30 11959.0 31 13954.0 32 15949.0 33 17910.0 34 19871.0 35 22581.5 36 25292.0 37 27585.0 38 29878.0 39 36194.5 40 42511.0 41 53333.5 42 64156.0 43 72880.0 44 81604.0 45 83216.5 46 84829.0 47 83006.0 48 81183.0 49 80114.5 50 79046.0 51 77296.5 52 75547.0 53 67951.0 54 60355.0 55 55423.5 56 50492.0 57 47517.5 58 44543.0 59 40746.5 60 36950.0 61 34079.0 62 31208.0 63 27701.0 64 24194.0 65 20414.5 66 16635.0 67 14306.0 68 11977.0 69 10374.0 70 8771.0 71 7625.5 72 6480.0 73 5160.5 74 3841.0 75 3118.5 76 2396.0 77 1870.5 78 1345.0 79 1014.5 80 684.0 81 529.0 82 374.0 83 260.0 84 146.0 85 124.0 86 102.0 87 74.0 88 46.0 89 39.0 90 32.0 91 24.5 92 17.0 93 10.5 94 4.0 95 4.0 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1107378.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.02505597521998 #Duplication Level Percentage of deduplicated Percentage of total 1 75.76630861640521 24.264202744761683 2 7.40742780779098 4.7444658035381435 3 3.4355162052334562 3.3006779632913035 4 2.209348561686518 2.8301804542712996 5 1.5802034693927571 2.530305227976993 6 1.2093393896389903 2.323749698773622 7 0.9379556293835167 2.1026657073295865 8 0.788899978397344 2.021165277361982 9 0.643631417998037 1.855109896991761 >10 5.3522406903685305 35.30876486398557 >50 0.6060248431343278 12.963637481331592 >100 0.06196639254237602 3.0447159889957356 >500 5.684990140024469E-4 0.09540055478529721 >1k 2.8424950700122343E-4 0.11688388582473438 >5k 0.0 0.0 >10k+ 2.8424950700122343E-4 2.4980744507806545 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27442 2.4781059403383487 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1284 0.11594956735640405 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023659491158393973 0.0 2 0.0 0.0 0.0 0.10249436055258457 0.0 3 0.0 0.0 0.0 0.16083035783625826 0.0 4 0.0 0.0 0.0 0.243819183693373 0.0 5 0.0 0.0 0.0 0.44320909391373137 0.0 6 0.0 0.0 0.0 0.6754694422320111 0.0 7 0.0 0.0 0.0 0.8322361470067131 0.0 8 0.0 0.0 0.0 1.22234684091611 0.0 9 0.0 0.0 0.0 1.4309476980759956 0.0 10 0.0 0.0 0.0 1.7883685606902069 0.0 11 0.0 0.0 0.0 2.0566599661542853 0.0 12 0.0 0.0 0.0 2.3077937253584593 0.0 13 0.0 0.0 0.0 2.406043826046752 0.0 14 0.0 0.0 0.0 2.445506412444531 0.0 15 0.0 0.0 0.0 2.498966026054337 0.0 16 9.030340136791592E-5 0.0 0.0 2.6085040519136196 0.0 17 9.030340136791592E-5 0.0 0.0 2.729510609746627 0.0 18 9.030340136791592E-5 0.0 0.0 2.918425325408307 0.0 19 9.030340136791592E-5 0.0 0.0 2.999698386639431 0.0 20 9.030340136791592E-5 0.0 0.0 3.0946975648784787 0.0 21 9.030340136791592E-5 0.0 0.0 3.1933991825736108 0.0 22 9.030340136791592E-5 0.0 0.0 3.309168143127279 0.0 23 9.030340136791592E-5 0.0 0.0 3.420873450619391 0.0 24 9.030340136791592E-5 0.0 0.0 3.517227179878957 0.0 25 9.030340136791592E-5 0.0 0.0 3.591456575803384 0.0 26 9.030340136791592E-5 0.0 0.0 3.664963544516868 0.0 27 9.030340136791592E-5 0.0 0.0 3.7544542152724723 0.0 28 1.8060680273583184E-4 0.0 0.0 3.836810917320012 0.0 29 1.8060680273583184E-4 0.0 0.0 3.9188064057620795 0.0 30 1.8060680273583184E-4 0.0 0.0 4.041619031622445 0.0 31 1.8060680273583184E-4 0.0 0.0 4.140410952718945 0.0 32 1.8060680273583184E-4 0.0 0.0 4.232520422114219 0.0 33 1.8060680273583184E-4 0.0 0.0 4.328874151373785 0.0 34 1.8060680273583184E-4 0.0 0.0 4.431458815327738 0.0 35 1.8060680273583184E-4 0.0 0.0 4.5445186738403685 0.0 36 1.8060680273583184E-4 0.0 0.0 4.634551165004181 0.0 37 1.8060680273583184E-4 0.0 0.0 4.734426726917096 0.0 38 1.8060680273583184E-4 0.0 0.0 4.850556901076236 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATCG 20 7.856356E-4 44.000004 9 ATCGCTC 20 7.856356E-4 44.000004 28 TACCGGC 20 7.856356E-4 44.000004 42 CGGGTAT 75 0.0 44.0 6 TATAGCG 45 4.802132E-10 44.0 1 GCGTATA 30 2.5276331E-6 44.0 25 CGTTTTT 16820 0.0 43.411415 1 CGGTCTA 155 0.0 42.580647 31 TCACGAC 150 0.0 42.533333 25 ACGTAGG 150 0.0 41.066666 2 TCTAGCG 60 3.6379788E-12 40.333332 1 GTACGAG 60 3.6379788E-12 40.333332 1 ACGGTCT 160 0.0 39.875004 30 GTTTTTT 18830 0.0 39.688797 2 ATAACGG 50 1.3478711E-9 39.6 2 TCGTTGA 145 0.0 39.448277 24 TATCGCG 45 2.3508619E-8 39.11111 1 CGACAGT 40 4.1243584E-7 38.500004 44 ACGACGG 160 0.0 38.500004 27 GCCCTAC 290 0.0 37.931038 26 >>END_MODULE