##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545974_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 942065 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.93048568835484 28.0 25.0 30.0 16.0 33.0 2 26.171092228243275 30.0 25.0 31.0 10.0 33.0 3 26.409454761614114 30.0 25.0 31.0 16.0 33.0 4 27.820807481437054 32.0 19.0 35.0 10.0 35.0 5 31.161622605658845 33.0 30.0 35.0 19.0 37.0 6 29.933134125564585 33.0 28.0 35.0 17.0 36.0 7 29.925751407811564 32.0 28.0 35.0 17.0 35.0 8 32.39572428654074 33.0 32.0 35.0 28.0 35.0 9 27.159981529936893 31.0 23.0 34.0 10.0 35.0 10 31.3727449804419 34.0 28.0 37.0 17.0 39.0 11 33.692751561728755 35.0 32.0 37.0 27.0 39.0 12 33.257592628958726 35.0 31.0 39.0 24.0 39.0 13 33.53724849134614 35.0 32.0 39.0 25.0 39.0 14 33.346466538933086 36.0 31.0 39.0 22.0 40.0 15 32.14516620403051 34.0 27.0 38.0 18.0 40.0 16 30.652928407275507 34.0 27.0 38.0 17.0 40.0 17 30.921734699834936 33.0 27.0 38.0 17.0 40.0 18 31.783988365983237 34.0 29.0 38.0 18.0 39.0 19 31.393315747851794 34.0 27.0 37.0 18.0 39.0 20 32.01318380366535 34.0 30.0 37.0 21.0 39.0 21 32.85304411054439 35.0 31.0 37.0 24.0 39.0 22 33.200726064549684 35.0 31.0 37.0 25.0 39.0 23 34.40275458699771 35.0 33.0 38.0 28.0 40.0 24 33.995337901312546 35.0 33.0 38.0 26.0 40.0 25 32.811213663600704 35.0 31.0 38.0 23.0 39.0 26 26.420407296736425 33.0 20.0 36.0 0.0 39.0 27 29.723785513738438 34.0 24.0 37.0 15.0 39.0 28 31.249386188851087 34.0 27.0 37.0 20.0 39.0 29 32.47840117189366 35.0 30.0 37.0 23.0 39.0 30 32.31658537362072 35.0 30.0 37.0 22.0 39.0 31 31.147173496520942 34.0 29.0 36.0 18.0 39.0 32 31.407400763216977 34.0 30.0 37.0 18.0 39.0 33 31.013681646170912 34.0 29.0 37.0 17.0 39.0 34 30.810820909385235 34.0 29.0 37.0 15.0 39.0 35 29.937442745458117 34.0 27.0 37.0 10.0 39.0 36 29.67107046753674 34.0 26.0 37.0 10.0 39.0 37 29.73870698943279 34.0 26.0 37.0 10.0 39.0 38 29.47129019759783 33.0 26.0 37.0 10.0 39.0 39 29.299088704070314 33.0 25.0 37.0 9.0 39.0 40 29.182319691316415 33.0 25.0 36.0 9.0 38.0 41 28.56452049487031 33.0 23.0 36.0 8.0 38.0 42 28.697624898494265 33.0 24.0 36.0 8.0 38.0 43 28.29935195554447 32.0 23.0 36.0 8.0 38.0 44 28.090086140552934 32.0 23.0 35.0 8.0 38.0 45 27.604113304283675 31.0 23.0 35.0 8.0 38.0 46 27.17808537627446 31.0 22.0 35.0 7.0 38.0 47 27.201848067808484 31.0 23.0 35.0 8.0 38.0 48 27.253305239022787 31.0 23.0 34.0 8.0 37.0 49 27.06889758137708 31.0 22.0 34.0 7.0 37.0 50 28.819594189360608 33.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 12.0 11 22.0 12 32.0 13 131.0 14 313.0 15 730.0 16 1571.0 17 2813.0 18 4545.0 19 7335.0 20 10685.0 21 14756.0 22 19823.0 23 26368.0 24 34002.0 25 42270.0 26 49286.0 27 52859.0 28 57398.0 29 64979.0 30 76372.0 31 89032.0 32 97647.0 33 97894.0 34 87362.0 35 65666.0 36 31712.0 37 6304.0 38 144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.143700275458702 22.032237690605214 25.770090174244874 27.053971859691213 2 41.80486484478247 16.759777722343998 28.420119630811037 13.01523780206249 3 28.604501812507632 14.161761661881082 43.13821233142087 14.095524194190423 4 25.674343065499727 23.6356302378286 36.907219777828495 13.78280691884318 5 19.43103713650332 27.946797726271544 39.57826689241188 13.043898244813256 6 18.10798617929761 33.34557594221206 38.11966265597385 10.426775222516493 7 74.92890617950991 3.5153625280633505 19.860094579461077 1.6956367129656658 8 76.58961961223483 2.303981147797657 19.313317021649247 1.793082218318269 9 64.40521620058064 3.4691873702982283 19.18997096803299 12.93562546108814 10 40.74453461279211 22.14061662411829 26.302537510681322 10.812311252408273 11 34.718411149973726 20.45962858189191 32.27431228206122 12.547647986073148 12 30.715184196419564 19.590049518876086 36.81179111844724 12.882975166257104 13 19.888755022211843 29.16433579423925 36.58229527686518 14.36461390668372 14 15.350851586673956 30.758811759273513 39.22139130527087 14.668945348781664 15 14.438918758259781 19.12001825776353 48.51278839570518 17.92827458827151 16 16.355347030194306 16.057278425586343 46.822034572985935 20.765339971233406 17 17.406123781267745 17.354004235376543 38.13388672756126 27.10598525579445 18 20.034498681088884 20.262189976275522 41.87970044529836 17.823610897337232 19 24.909533843206148 20.879026394144777 36.25057718947207 17.96086257317701 20 26.097456120331397 20.768206015508483 35.88648341674938 17.24785444741074 21 21.340777971796 22.8125447819418 38.27517209534374 17.571505150918462 22 21.044832362947353 20.199349301799767 36.349614941644155 22.40620339360872 23 18.28217798134948 24.19291662464904 36.259918370813054 21.26498702318842 24 18.13494822544092 20.88295393629951 44.241533227537374 16.74056461072219 25 17.841762511079384 20.539983971382018 41.83331298795731 19.78494052958129 26 13.449496584630571 38.215091315355096 30.760404006092994 17.575008093921333 27 16.74183840817778 26.570565725294966 38.42080960443282 18.266786262094442 28 16.277963834767238 23.218567720910976 43.28745893330078 17.216009511021003 29 16.94543370149618 21.693938316358214 42.15462839612978 19.205999586015825 30 19.056540684559984 24.070844368488373 39.3274349434487 17.545180003502946 31 25.364810283791456 22.427008752050018 35.00958001836391 17.198600945794613 32 24.94488172259876 21.856559791521814 35.47324229219852 17.725316193680904 33 24.008322143376517 23.589773529427376 33.748414387542255 18.653489939653845 34 19.135622276594503 24.297898764947217 34.85980266754417 21.70667629091411 35 20.726382999049957 23.536167886504646 34.80598472504551 20.93146438939988 36 25.972517819895657 23.4313980457824 31.04711458338862 19.54896955093332 37 20.373859553215542 28.25983345098268 31.573829831274914 19.792477164526865 38 20.54348691438489 28.35791585506308 29.739030746286083 21.359566484265947 39 20.829560592952713 27.25969014876893 30.314256447272747 21.59649281100561 40 22.79630386438303 23.956627196637175 30.595765684958042 22.65130325402175 41 18.957609082175857 22.957863841666974 31.494323640088528 26.590203436068638 42 21.04270936718804 24.223912362735057 28.62668711819248 26.106691151884426 43 20.882317037571717 24.265629229405615 30.53876324882041 24.31329048420226 44 19.77613009718013 26.254027057580952 30.915382696523064 23.05446014871585 45 18.534814476708085 30.993615090253858 28.363647943613234 22.107922489424826 46 20.9006809508898 26.5294857573522 30.405545264923333 22.164288026834665 47 20.671503558671642 25.02820930615191 30.808914459193364 23.49137267598308 48 20.942503967348326 23.78540758864834 33.23231411845255 22.039774325550784 49 20.802067797869576 23.287140483936884 32.67407238354041 23.23671933465313 50 19.351849394680833 27.481755505193377 31.557482763928178 21.60891233619761 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 252.0 1 587.5 2 923.0 3 12718.0 4 24513.0 5 19445.5 6 14378.0 7 13992.5 8 13607.0 9 14447.0 10 15287.0 11 15708.0 12 16129.0 13 15780.5 14 15432.0 15 14834.5 16 14237.0 17 13561.5 18 12886.0 19 12086.5 20 11287.0 21 10534.0 22 9781.0 23 9724.0 24 9667.0 25 9079.5 26 8492.0 27 8707.5 28 8923.0 29 10027.5 30 11132.0 31 12623.0 32 14114.0 33 15662.5 34 17211.0 35 19262.5 36 21314.0 37 23067.0 38 24820.0 39 29576.0 40 34332.0 41 43282.0 42 52232.0 43 59484.0 44 66736.0 45 68804.0 46 70872.0 47 68891.5 48 66911.0 49 65670.0 50 64429.0 51 62782.5 52 61136.0 53 55780.0 54 50424.0 55 47065.5 56 43707.0 57 40906.5 58 38106.0 59 35126.0 60 32146.0 61 29692.5 62 27239.0 63 24196.0 64 21153.0 65 18167.5 66 15182.0 67 13125.0 68 11068.0 69 9486.0 70 7904.0 71 6857.5 72 5811.0 73 4674.0 74 3537.0 75 2855.0 76 2173.0 77 1721.0 78 1269.0 79 946.5 80 624.0 81 480.5 82 337.0 83 239.5 84 142.0 85 126.0 86 110.0 87 76.0 88 42.0 89 36.0 90 30.0 91 24.0 92 18.0 93 11.0 94 4.0 95 5.0 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 942065.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.65529556296332 #Duplication Level Percentage of deduplicated Percentage of total 1 82.01807124770319 39.90613498061182 2 7.104907583196566 6.913827568159365 3 2.9227325649141878 4.26619250392193 4 1.6645199309836607 3.2395083684981327 5 1.1128693771229043 2.7073494233442905 6 0.7641241713571425 2.230721244251172 7 0.5598260217894591 1.9066950387802852 8 0.4679017526581908 1.8212718456010266 9 0.3794541678812546 1.6616209221774672 >10 2.826246984579318 27.053295024538933 >50 0.160946150868714 4.941485351566872 >100 0.017468398999573056 1.323057880696719 >500 4.658239728972228E-4 0.12137002050211895 >1k 2.329119864486114E-4 0.3011019089394305 >5k 0.0 0.0 >10k+ 2.329119864486114E-4 1.606367918410398 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14175 1.5046732444151942 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 2657 0.28203998662512675 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020805358441296513 0.0 2 0.0 0.0 0.0 0.09118266786262094 0.0 3 0.0 0.0 0.0 0.13640247753605111 0.0 4 0.0 0.0 0.0 0.189158922155053 0.0 5 0.0 0.0 0.0 0.3135664736509689 0.0 6 0.0 0.0 0.0 0.44784595542770406 0.0 7 0.0 0.0 0.0 0.5397716718060855 0.0 8 0.0 0.0 0.0 0.7717089585113553 0.0 9 0.0 0.0 0.0 0.9377272268898643 0.0 10 0.0 0.0 0.0 1.1751843025693556 0.0 11 0.0 0.0 0.0 1.3629632774808533 0.0 12 0.0 0.0 0.0 1.519534214730406 0.0 13 0.0 0.0 0.0 1.586408581148859 0.0 14 0.0 0.0 0.0 1.6126275787764115 0.0 15 0.0 0.0 0.0 1.64702011007733 0.0 16 0.0 0.0 0.0 1.7103915334929118 0.0 17 0.0 0.0 0.0 1.8021049502953619 0.0 18 0.0 0.0 0.0 1.9224788098485772 0.0 19 0.0 0.0 0.0 1.9713077123128446 0.0 20 0.0 0.0 0.0 2.0299023952699655 0.0 21 0.0 0.0 0.0 2.083401888404728 0.0 22 0.0 0.0 0.0 2.150700853975044 0.0 23 0.0 0.0 0.0 2.2174690706055316 0.0 24 0.0 0.0 0.0 2.273516158651473 0.0 25 0.0 0.0 0.0 2.3117300823191607 0.0 26 0.0 0.0 0.0 2.356312993264796 0.0 27 0.0 0.0 0.0 2.4193659673164802 0.0 28 0.0 0.0 0.0 2.4788098485773276 0.0 29 0.0 0.0 0.0 2.5451534660559516 0.0 30 0.0 0.0 0.0 2.626570353425719 2.1229957593159709E-4 31 0.0 0.0 0.0 2.693975468784001 2.1229957593159709E-4 32 0.0 0.0 0.0 2.7647773773571886 2.1229957593159709E-4 33 0.0 0.0 0.0 2.8368530833859658 2.1229957593159709E-4 34 0.0 0.0 0.0 2.908398040474914 2.1229957593159709E-4 35 0.0 0.0 0.0 2.9940609193633136 2.1229957593159709E-4 36 0.0 0.0 0.0 3.0648628279365013 2.1229957593159709E-4 37 0.0 0.0 0.0 3.141502974847808 2.1229957593159709E-4 38 0.0 0.0 0.0 3.2280150520399333 2.1229957593159709E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTACG 25 4.4422275E-5 44.0 31 TACGTCA 20 7.855758E-4 44.0 35 CGTTTTT 14985 0.0 43.38338 1 CACGACG 70 0.0 40.85714 26 CGCATGG 130 0.0 40.615387 2 ATAGGCG 115 0.0 40.173916 4 TAACGGG 170 0.0 40.11765 3 CTCGAAT 55 7.8216544E-11 40.0 22 TAGGACG 55 7.8216544E-11 40.0 1 GTTTTTT 16885 0.0 39.140064 2 CGCACGG 85 0.0 38.823532 2 CGTTAGG 125 0.0 38.72 2 ACGGGTG 40 4.1234853E-7 38.5 5 CGACGGT 110 0.0 38.0 28 ACGACGG 110 0.0 38.0 27 CGGTCTA 105 0.0 37.714287 31 ACGGTCT 105 0.0 37.714287 30 TCGCAAT 35 7.2888106E-6 37.714283 21 ATACGTT 35 7.2888106E-6 37.714283 11 TTAGCGG 235 0.0 37.44681 2 >>END_MODULE