##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545973_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 160773 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.152929907384948 31.0 28.0 33.0 25.0 33.0 2 28.73811523079124 31.0 28.0 33.0 16.0 33.0 3 28.216622194025117 31.0 27.0 33.0 16.0 34.0 4 32.16248997033084 35.0 32.0 35.0 25.0 37.0 5 33.6539904088373 35.0 33.0 35.0 28.0 37.0 6 33.42925740018536 35.0 33.0 37.0 28.0 37.0 7 34.42846746655222 35.0 35.0 37.0 32.0 37.0 8 34.819577914202014 35.0 35.0 37.0 32.0 37.0 9 36.658132895448865 39.0 37.0 39.0 32.0 39.0 10 36.48274274909344 39.0 35.0 39.0 32.0 39.0 11 36.37687920235363 39.0 35.0 39.0 32.0 39.0 12 34.927730402492955 35.0 33.0 39.0 29.0 39.0 13 34.57517742406996 37.0 33.0 39.0 25.0 39.0 14 35.31086065446313 37.0 33.0 40.0 25.0 41.0 15 36.09432553973615 38.0 34.0 40.0 30.0 41.0 16 35.78554234852867 36.0 34.0 40.0 30.0 41.0 17 35.310344398624146 36.0 33.0 40.0 29.0 41.0 18 34.98969354307004 36.0 33.0 39.0 29.0 40.0 19 34.446293842871626 36.0 33.0 39.0 27.0 40.0 20 34.899585129343855 35.0 34.0 39.0 29.0 40.0 21 35.06473101826799 35.0 34.0 39.0 30.0 40.0 22 35.40964589825406 35.0 34.0 39.0 30.0 40.0 23 35.7959483246565 35.0 34.0 40.0 31.0 41.0 24 35.48223271320433 35.0 34.0 40.0 31.0 41.0 25 35.1122203355041 35.0 34.0 39.0 30.0 41.0 26 35.210725681551004 35.0 34.0 39.0 30.0 41.0 27 35.45846006481188 35.0 34.0 40.0 31.0 41.0 28 35.43595006624247 36.0 34.0 40.0 31.0 41.0 29 35.623226536794114 36.0 35.0 40.0 31.0 41.0 30 35.25146635318119 36.0 34.0 40.0 30.0 41.0 31 34.604131290701794 35.0 34.0 39.0 29.0 40.0 32 34.46130258190119 35.0 34.0 39.0 27.0 40.0 33 34.1177374310363 35.0 33.0 39.0 24.0 41.0 34 33.82434239580029 35.0 34.0 40.0 23.0 41.0 35 33.5466651738787 35.0 33.0 40.0 21.0 41.0 36 33.12856014380524 35.0 33.0 39.0 18.0 41.0 37 33.01389536800333 35.0 33.0 39.0 18.0 41.0 38 32.86347210041487 35.0 33.0 39.0 18.0 40.0 39 32.73187040112457 35.0 33.0 39.0 17.0 40.0 40 32.55610705777711 35.0 32.0 39.0 16.0 40.0 41 32.26875781381202 35.0 32.0 38.0 15.0 40.0 42 32.412444875694305 35.0 32.0 39.0 15.0 40.0 43 32.20115317870538 35.0 32.0 38.0 15.0 40.0 44 31.891636033413572 35.0 31.0 38.0 12.0 40.0 45 31.86056116387702 35.0 31.0 38.0 12.0 40.0 46 31.736784161519658 35.0 31.0 38.0 12.0 40.0 47 31.74296679168766 35.0 31.0 38.0 12.0 40.0 48 31.84062622455263 35.0 31.0 38.0 12.0 40.0 49 31.863378801166863 35.0 31.0 38.0 12.0 40.0 50 31.94703090693089 35.0 32.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 5.0 15 16.0 16 37.0 17 91.0 18 194.0 19 355.0 20 545.0 21 742.0 22 1127.0 23 1554.0 24 2210.0 25 3168.0 26 4514.0 27 5171.0 28 5138.0 29 4845.0 30 5440.0 31 6684.0 32 9145.0 33 14729.0 34 24290.0 35 15032.0 36 13335.0 37 18401.0 38 19636.0 39 4366.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.77982621460071 23.86656963544874 27.923842933825956 22.429761216124597 2 36.17336244269872 20.93386327306202 30.415554850627903 12.477219433611365 3 27.61346743545247 19.037400558551496 40.1566183376562 13.192513668339833 4 24.37784951453291 25.213810776685143 36.29900543001624 14.109334278765715 5 20.135843705099738 29.483184365534015 37.25127975468518 13.12969217468107 6 17.963837211472075 37.17664035627873 34.37019897619626 10.489323456052944 7 77.80535288885572 4.780031472946328 15.103282267544923 2.3113333706530326 8 79.64832403450828 3.3936046475465407 14.575830518806018 2.382240799139159 9 76.72805757185597 4.548027342899616 15.661833765619848 3.0620813196245638 10 52.246956889527475 19.124479856692357 19.539350512834865 9.089212740945309 11 47.09621640449578 16.270144862632407 26.24818843960118 10.385450293270635 12 41.860884601270115 18.79544450871726 27.916378993985308 11.427291896027318 13 18.96213916515833 40.13733649306786 28.40962101845459 12.490903323319213 14 13.166389878897574 40.61254066292226 32.55957156985315 13.66149788832702 15 11.970915514420954 20.10971991565748 54.89478954799625 13.024575021925322 16 14.216939411468344 15.108258227438686 53.06114832714448 17.613654033948485 17 15.2793068487868 15.921205675082259 33.916764630877076 34.882722845253866 18 19.975990993512593 19.986564908286837 40.66230026185989 19.37514383634068 19 27.428734924396508 21.46753497166813 31.57246552592786 19.5312645780075 20 29.599497428050732 20.35851791034564 30.7172224191873 19.324762242416327 21 20.113451885577803 26.941090854807708 34.01006387888514 18.93539338072935 22 21.419019362703935 21.767958550254086 30.510720083596127 26.302302003445853 23 17.505426906259135 28.13283324936401 30.462204474631932 23.89953536974492 24 17.554564510210046 20.483538902676443 45.833566581453354 16.128330005660153 25 15.487675169338136 21.782264434948654 43.18386793802442 19.54619245768879 26 14.843910358082512 31.84303334515124 33.86949301188633 19.443563284879925 27 15.712215359544201 32.22369427702413 34.578567296747586 17.485523066684085 28 13.50786512660708 25.27414429039702 44.86760836707656 16.35038221591934 29 14.350046338626509 21.64107157296312 43.63232632344983 20.376555764960536 30 17.000366977042162 28.789659955340756 36.67095843207503 17.53901463554204 31 28.31196780553949 23.785088292188362 30.47899833927338 17.423945562998764 32 29.81035372854895 22.942285085182213 30.944872584326973 16.30248860194187 33 27.37462136055183 24.826929894945046 29.52734600959116 18.271102734911956 34 18.38181784254819 25.47567066609443 31.720500332767315 24.422011158590063 35 19.170507485709663 24.6030116997257 35.16759654917181 21.058884265392823 36 30.401870960920057 22.788030328475553 28.599951484391035 18.21014722621336 37 19.717241079036903 31.331753466067063 30.91128485504407 18.039720599851965 38 19.88144775553109 31.29816573678416 27.019462223134482 21.800924284550266 39 20.1439296399271 30.51196407356957 29.118695303315857 20.225410983187476 40 24.581241875190486 24.481722677315222 27.207304709124045 23.72973073837025 41 17.778482705429393 22.498180664663842 29.84456345281857 29.878773177088192 42 21.808388224390914 23.033096353243394 26.483302544581488 28.675212877784205 43 21.888625577677846 24.520286366491888 27.762124237278645 25.82896381855162 44 19.150603646134613 28.643491133461463 29.970206440136092 22.235698780267832 45 16.596070235673903 36.80779732915352 24.772816331100373 21.8233161040722 46 21.191369197564267 31.336729425960826 27.242758423367107 20.229142953107797 47 21.190747202577548 25.54720008956728 29.34136950856176 23.920683199293414 48 22.256224614829602 21.92843325682795 33.51495586945569 22.300386258886753 49 20.668271413732406 22.576552032990612 34.304889502590605 22.45028705068637 50 18.416649561804533 31.128361105409493 29.11247535344865 21.342513979337326 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 81.0 1 120.0 2 159.0 3 1801.0 4 3443.0 5 2551.0 6 1659.0 7 1744.0 8 1829.0 9 1986.0 10 2143.0 11 2167.0 12 2191.0 13 2061.5 14 1932.0 15 1809.0 16 1686.0 17 1540.5 18 1395.0 19 1273.5 20 1152.0 21 1039.5 22 927.0 23 902.5 24 878.0 25 874.5 26 871.0 27 972.5 28 1074.0 29 1293.0 30 1512.0 31 2014.0 32 2516.0 33 2535.0 34 2554.0 35 2972.5 36 3391.0 37 3736.5 38 4082.0 39 5461.5 40 6841.0 41 9657.5 42 12474.0 43 14952.5 44 17431.0 45 16982.5 46 16534.0 47 15078.5 48 13623.0 49 12755.5 50 11888.0 51 11213.5 52 10539.0 53 9336.0 54 8133.0 55 7109.0 56 6085.0 57 5487.0 58 4889.0 59 4464.0 60 4039.0 61 3653.0 62 3267.0 63 3058.0 64 2849.0 65 2531.0 66 2213.0 67 1887.5 68 1562.0 69 1326.5 70 1091.0 71 872.0 72 653.0 73 592.5 74 532.0 75 446.0 76 360.0 77 239.0 78 118.0 79 105.0 80 92.0 81 63.0 82 34.0 83 31.0 84 28.0 85 22.0 86 16.0 87 9.0 88 2.0 89 2.5 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 160773.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.459194018896206 #Duplication Level Percentage of deduplicated Percentage of total 1 72.76005951610817 27.98293245756439 2 8.579699831802303 6.599366809103518 3 3.8798680294992884 4.47649791942677 4 2.505175313753396 3.853880937719642 5 1.7353473929356968 3.337003103754984 6 1.3827791434855738 3.1908342818756883 7 1.1692974511579766 3.14791662779198 8 0.9444947599948246 2.9059605779577415 9 0.8878897658170527 3.073277229385531 >10 6.124660370034933 39.343670890012625 >50 0.027493854314917843 0.6232389766938479 >100 0.0016172855479363434 0.11817904747687734 >500 0.0 0.0 >1k 0.0016172855479363434 1.3472411412364016 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2166 1.3472411412364016 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 190 0.11817904747687734 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.041051669123546866 0.0 2 0.0 0.0 0.0 0.10884912267607123 0.0 3 0.0 0.0 0.0 0.1418148569722528 0.0 4 0.0 0.0 0.0 0.22640617516622816 0.0 5 0.0 0.0 0.0 0.3794169418994483 0.0 6 0.0 0.0 0.0 0.5971151872515907 0.0 7 0.0 0.0 0.0 0.7339540843300802 0.0 8 0.0 0.0 0.0 1.123322946017055 0.0 9 0.0 0.0 0.0 1.3198733618207037 0.0 10 6.21994986720407E-4 0.0 0.0 1.6731665142778949 0.0 11 6.21994986720407E-4 0.0 0.0 1.8809128398425108 0.0 12 6.21994986720407E-4 0.0 0.0 2.0681333308453533 0.0 13 6.21994986720407E-4 0.0 0.0 2.1496146741057265 0.0 14 6.21994986720407E-4 0.0 0.0 2.1794704334683064 0.0 15 6.21994986720407E-4 0.0 0.0 2.2186561176316917 0.0 16 6.21994986720407E-4 0.0 0.0 2.3051134207858284 0.0 17 6.21994986720407E-4 0.0 0.0 2.3953026938602875 0.0 18 6.21994986720407E-4 0.0 0.0 2.5613753553146363 0.0 19 6.21994986720407E-4 0.0 0.0 2.619220889079634 0.0 20 6.21994986720407E-4 0.0 0.0 2.6957262724462443 0.0 21 6.21994986720407E-4 0.0 0.0 2.794623475334789 0.0 22 6.21994986720407E-4 0.0 0.0 2.8960086581702154 0.0 23 6.21994986720407E-4 0.0 0.0 2.9911738911384376 0.0 24 6.21994986720407E-4 0.0 0.0 3.0552393747706392 0.0 25 6.21994986720407E-4 0.0 0.0 3.1168168784559596 0.0 26 6.21994986720407E-4 0.0 0.0 3.1653324874201516 0.0 27 6.21994986720407E-4 0.0 0.0 3.2206900412382677 0.0 28 6.21994986720407E-4 0.0 0.0 3.2729376201227818 0.0 29 6.21994986720407E-4 0.0 0.0 3.337625098741704 0.0 30 6.21994986720407E-4 0.0 0.0 3.434656316670088 0.0 31 6.21994986720407E-4 0.0 0.0 3.521113619824224 0.0 32 6.21994986720407E-4 0.0 0.0 3.5752271836688996 0.0 33 6.21994986720407E-4 0.0 0.0 3.6455126171683054 0.0 34 6.21994986720407E-4 0.0 0.0 3.734457900269324 0.0 35 6.21994986720407E-4 0.0 0.0 3.8314891181977075 0.0 36 6.21994986720407E-4 0.0 0.0 3.8974205867900706 0.0 37 0.001243989973440814 0.0 0.0 3.9863658698910887 0.0 38 0.001243989973440814 0.0 0.0 4.077177137952268 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGAT 55 1.8189894E-12 44.000004 9 GTGTAGG 55 1.8189894E-12 44.000004 2 TCACGGG 20 7.8362663E-4 44.0 3 GTTGATC 25 4.4257205E-5 44.0 16 TTGATCC 25 4.4257205E-5 44.0 17 GTTGAAG 45 4.7475623E-10 44.0 1 AAGTAGA 20 7.8362663E-4 44.0 28 GGAATAC 20 7.8362663E-4 44.0 8 TCGTTTC 20 7.8362663E-4 44.0 41 TCGTTGA 40 8.236384E-9 44.0 24 AATTTCG 20 7.8362663E-4 44.0 37 CGAAAGG 20 7.8362663E-4 44.0 2 CGACGGG 20 7.8362663E-4 44.0 3 GGCACGG 20 7.8362663E-4 44.0 2 ACCGATT 20 7.8362663E-4 44.0 10 TGTATCA 20 7.8362663E-4 44.0 19 CTAAGTT 20 7.8362663E-4 44.0 21 GAATACT 20 7.8362663E-4 44.0 9 CCTAAGT 20 7.8362663E-4 44.0 20 GCGTTGG 20 7.8362663E-4 44.0 2 >>END_MODULE