##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545969_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 448756 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.07026089901862 31.0 28.0 33.0 25.0 33.0 2 28.838442271523945 31.0 28.0 33.0 16.0 33.0 3 28.207636221019886 31.0 27.0 33.0 16.0 34.0 4 32.09513856082147 35.0 32.0 35.0 25.0 37.0 5 33.62096774193548 35.0 33.0 35.0 28.0 37.0 6 33.469956947650836 35.0 33.0 37.0 28.0 37.0 7 34.32561347369172 35.0 35.0 37.0 31.0 37.0 8 34.76664824537165 35.0 35.0 37.0 32.0 37.0 9 36.54161058570805 39.0 37.0 39.0 32.0 39.0 10 36.34737140004813 38.0 35.0 39.0 32.0 39.0 11 36.350201445774545 38.0 35.0 39.0 32.0 39.0 12 35.07839003823904 37.0 34.0 39.0 29.0 39.0 13 35.027732219736336 37.0 34.0 39.0 27.0 39.0 14 35.69236065924467 38.0 33.0 40.0 27.0 41.0 15 36.36284974462737 38.0 35.0 40.0 31.0 41.0 16 36.058564119476955 37.0 34.0 40.0 30.0 41.0 17 35.651679309023166 37.0 34.0 40.0 29.0 41.0 18 35.29311251548726 37.0 33.0 39.0 29.0 40.0 19 34.733977930100096 36.0 33.0 39.0 27.0 40.0 20 35.115755555357474 35.0 34.0 39.0 29.0 40.0 21 35.31347770280509 35.0 34.0 39.0 30.0 40.0 22 35.677631051172575 36.0 34.0 39.0 31.0 40.0 23 36.00712191034771 36.0 35.0 40.0 31.0 41.0 24 35.712173207711984 35.0 34.0 40.0 31.0 41.0 25 35.331110893224825 35.0 34.0 39.0 30.0 41.0 26 35.43625043453458 35.0 34.0 40.0 30.0 41.0 27 35.71696423000473 36.0 34.0 40.0 31.0 41.0 28 35.6551021044844 36.0 35.0 40.0 31.0 41.0 29 35.81132954211197 36.0 35.0 40.0 31.0 41.0 30 35.44451327670271 36.0 34.0 40.0 30.0 41.0 31 34.76307391990302 35.0 34.0 39.0 29.0 41.0 32 34.64934842096819 35.0 34.0 40.0 27.0 41.0 33 34.29748014511227 35.0 34.0 40.0 24.0 41.0 34 33.913400600771915 35.0 34.0 40.0 21.0 41.0 35 33.57663852962412 35.0 33.0 40.0 18.0 41.0 36 33.12457549314104 35.0 33.0 40.0 17.0 41.0 37 33.00880211072387 35.0 33.0 40.0 15.0 41.0 38 32.84210350390858 35.0 33.0 40.0 15.0 41.0 39 32.67704498658514 35.0 32.0 39.0 15.0 40.0 40 32.464285714285715 35.0 32.0 39.0 15.0 40.0 41 32.16690807476669 35.0 31.0 39.0 12.0 40.0 42 32.3153116615711 35.0 32.0 39.0 12.0 40.0 43 32.112551141377494 35.0 31.0 39.0 10.0 40.0 44 31.825123229550133 35.0 31.0 39.0 10.0 40.0 45 31.79844726310066 35.0 31.0 39.0 10.0 40.0 46 31.665470768078865 35.0 31.0 38.0 10.0 40.0 47 31.629725285010117 35.0 31.0 38.0 10.0 40.0 48 31.656372282487588 35.0 31.0 38.0 10.0 40.0 49 31.65194002977119 35.0 31.0 38.0 10.0 40.0 50 31.76871172753122 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 4.0 13 14.0 14 20.0 15 51.0 16 129.0 17 299.0 18 536.0 19 931.0 20 1489.0 21 2152.0 22 3185.0 23 4322.0 24 6141.0 25 9391.0 26 13327.0 27 15151.0 28 14357.0 29 13867.0 30 15106.0 31 18265.0 32 24197.0 33 37001.0 34 57982.0 35 41490.0 36 40509.0 37 55866.0 38 60164.0 39 12807.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.83173038354919 21.586118068616354 27.738682045476832 23.843469502357628 2 38.37764843255578 19.92931570831365 29.034709285224043 12.658326573906534 3 27.803082298621078 18.983144515059408 40.37249641230424 12.84127677401528 4 24.28223800907397 24.589309112301564 37.80250291918102 13.32594995944344 5 20.241957767695585 29.23927479521165 37.65743522092183 12.861332216170926 6 18.1091729135655 35.79406180641596 35.59796414978295 10.498801130235584 7 75.41893590280687 4.837372647942312 17.450240219629375 2.2934512296214424 8 76.89635347493962 3.4994518179144127 16.929912914813393 2.674281792332582 9 73.31779407963349 4.509131911328205 18.372790558789188 3.8002834502491334 10 46.35726318979579 20.867241886459457 22.905320485965646 9.870174437779104 11 40.594888981985754 18.5918405547781 29.075934360766208 11.73733610246994 12 36.25957090267317 19.244310939575183 31.638351353519507 12.857766804232144 13 20.792145397498864 33.138498426761984 32.89917015037125 13.170186025367906 14 14.636238846945778 34.80421431691164 36.803296223337405 13.756250612805177 15 14.033461391045469 19.894107265418178 52.04387239390671 14.028558949629645 16 16.689024770699447 16.943951724322346 48.9972278922176 17.369795612760612 17 16.719553610425265 17.028630257868418 36.736444749485244 29.515371382221073 18 21.25698597901755 20.008423285705373 40.42731462086301 18.30727611441407 19 26.39318471507902 21.630685717851126 33.539830108121116 18.43629945894874 20 26.931116241342735 22.006613839146443 33.07632655607947 17.985943363431353 21 20.58111757837221 25.3351487222455 35.700469743022936 18.383263956359357 22 20.520951251905267 21.2224460508606 34.47530506555901 23.78129763167512 23 17.5583167690237 26.012131314121707 33.731916676322996 22.697635240531604 24 18.39150897146779 21.25520327304816 43.89133515763577 16.461952597848274 25 16.725793081318134 22.701200652470384 41.07844797618305 19.494558290028436 26 15.597563040939843 28.87671696868677 35.384485109948386 20.141234880424996 27 16.17359990729929 29.09710399415272 36.276729447628554 18.45256665091943 28 14.839021650963998 24.877438964604373 42.93513624330371 17.348403141127918 29 15.773605255417197 22.006168162654095 42.23564698856394 19.984579593364767 30 18.743147723930154 26.222044942017487 37.66857713323053 17.36623020082183 31 26.832398898287714 22.85696458654592 32.773266541283014 17.537369973883358 32 27.227936785246325 22.89328722067226 33.3216714651169 16.557104528964516 33 26.203772205831232 24.361791262958043 31.304093984258706 18.13034254695202 34 19.400743388389234 24.50396206401697 34.17491910971664 21.920375437877155 35 19.743468611004644 25.386178680619313 34.628172102434284 20.24218060594176 36 27.650883776484324 24.179732415833993 30.072689835901915 18.096693971779764 37 19.83015268876628 30.679924056725703 30.65206927595397 18.837853978554048 38 21.329854085516406 30.3414327607876 27.772330620649083 20.556382533046914 39 21.510130226671066 28.275945057002023 28.995935430389792 21.217989285937126 40 24.098173617734357 24.516441005802708 28.734991844120188 22.650393532342743 41 18.691003574325467 22.766715096845502 30.090516895595826 28.45176443323321 42 21.61530987886513 23.29551025501609 28.476945155050853 26.612234711067927 43 21.616201231849825 24.124245692536704 29.452530996800043 24.807022078813432 44 19.828369982796886 27.32219736337787 30.510344151387393 22.33908850243785 45 17.63853853764629 32.832987191257615 27.21055540204476 22.317918869051333 46 21.509238873686368 28.63694301580369 29.30166950414033 20.55214860636961 47 21.0749271318935 25.622387221563613 30.40783855814741 22.894847088395476 48 21.857089375963774 23.773052616566687 32.912763283387854 21.45709472408168 49 21.25765449375607 22.795015554109582 33.63030243606771 22.317027516066638 50 18.866377274064302 29.042954300332475 30.396919484084894 21.693748941518333 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 328.0 1 466.0 2 604.0 3 7273.5 4 13943.0 5 9739.0 6 5535.0 7 5634.5 8 5734.0 9 5952.0 10 6170.0 11 6151.5 12 6133.0 13 5901.5 14 5670.0 15 5280.0 16 4890.0 17 4544.5 18 4199.0 19 3900.0 20 3601.0 21 3405.0 22 3209.0 23 3117.0 24 3025.0 25 2905.5 26 2786.0 27 3056.5 28 3327.0 29 3881.5 30 4436.0 31 5039.0 32 5642.0 33 6635.0 34 7628.0 35 8810.5 36 9993.0 37 10791.0 38 11589.0 39 15327.5 40 19066.0 41 25632.0 42 32198.0 43 37176.0 44 42154.0 45 42481.0 46 42808.0 47 40015.5 48 37223.0 49 34353.5 50 31484.0 51 29109.0 52 26734.0 53 24226.5 54 21719.0 55 19773.5 56 17828.0 57 17118.5 58 16409.0 59 15057.0 60 13705.0 61 12358.5 62 11012.0 63 9885.5 64 8759.0 65 7487.0 66 6215.0 67 5315.5 68 4416.0 69 3772.0 70 3128.0 71 2710.5 72 2293.0 73 1803.5 74 1314.0 75 1077.5 76 841.0 77 644.0 78 447.0 79 355.0 80 263.0 81 187.5 82 112.0 83 95.0 84 78.0 85 61.0 86 44.0 87 33.0 88 22.0 89 21.0 90 20.0 91 16.0 92 12.0 93 10.0 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 448756.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.48863846418194 #Duplication Level Percentage of deduplicated Percentage of total 1 75.43171106215395 27.52400433681569 2 8.199489699119908 5.983764304439406 3 3.770026339042419 4.1268938425728665 4 2.255477037777194 3.291971447828643 5 1.508962165468973 2.7529987455963223 6 1.096357227338887 2.4002749497576947 7 0.8812260155180779 2.250831623982951 8 0.718974443219087 2.0987518818886217 9 0.5482216750997935 1.800347625085012 >10 5.345492046972399 39.42331898781996 >50 0.22204163069932686 5.037076128916073 >100 0.021408972656959895 1.2461004975070202 >500 0.0 0.0 >1k 0.0 0.0 >5k 6.116849330559969E-4 2.0636656277897023 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9246 2.060362424123577 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 472 0.10517965219406537 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.456764923477346E-4 0.0 0.0 0.045459002219468934 0.0 2 4.456764923477346E-4 0.0 0.0 0.1860699355551792 0.0 3 4.456764923477346E-4 0.0 0.0 0.24980167396090525 0.0 4 4.456764923477346E-4 0.0 0.0 0.3821675921881824 0.0 5 4.456764923477346E-4 0.0 0.0 0.7141965789872448 0.0 6 4.456764923477346E-4 0.0 0.0 1.0275071531077022 0.0 7 4.456764923477346E-4 0.0 0.0 1.2588132526361764 0.0 8 4.456764923477346E-4 0.0 0.0 1.8386383691805792 0.0 9 4.456764923477346E-4 0.0 0.0 2.155960031732166 0.0 10 8.913529846954692E-4 0.0 0.0 2.678738557256059 0.0 11 8.913529846954692E-4 0.0 0.0 3.015001470732425 0.0 12 8.913529846954692E-4 0.0 0.0 3.3777821355034807 0.0 13 0.0011141912308693365 0.0 0.0 3.522849833762668 0.0 14 0.001337029477043204 0.0 0.0 3.5790050717984827 0.0 15 0.001337029477043204 0.0 0.0 3.648753442850903 0.0 16 0.001337029477043204 0.0 0.0 3.780228008093485 0.0 17 0.001337029477043204 0.0 0.0 3.9395573541078 0.0 18 0.001337029477043204 0.0 0.0 4.189359028068705 0.0 19 0.001337029477043204 0.0 0.0 4.298772606940075 0.0 20 0.001337029477043204 0.0 0.0 4.427350274982396 0.0 21 0.0015598677232170712 0.0 0.0 4.577320414657408 0.0 22 0.0015598677232170712 0.0 0.0 4.725285010116856 0.0 23 0.0015598677232170712 0.0 0.0 4.869907031883696 0.0 24 0.0015598677232170712 0.0 0.0 4.979543449001239 0.0 25 0.0015598677232170712 0.0 0.0 5.0682330709784384 0.0 26 0.0015598677232170712 0.0 0.0 5.158928237171202 0.0 27 0.0015598677232170712 0.0 0.0 5.280152243089786 0.0 28 0.0015598677232170712 0.0 0.0 5.379538100883331 0.0 29 0.0015598677232170712 0.0 0.0 5.501430621540436 0.0 30 0.0015598677232170712 0.0 0.0 5.662765511770316 0.0 31 0.0015598677232170712 0.0 0.0 5.794017238766724 0.0 32 0.0017827059693909385 0.0 0.0 5.903653655884267 0.0 33 0.0017827059693909385 0.0 0.0 6.015741293709722 0.0 34 0.0017827059693909385 0.0 0.0 6.149221403167869 0.0 35 0.0017827059693909385 0.0 0.0 6.2956261309040995 0.0 36 0.0017827059693909385 0.0 0.0 6.428660563869898 0.0 37 0.0020055442155648058 0.0 0.0 6.568157305974739 0.0 38 0.0020055442155648058 0.0 0.0 6.744199520452094 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTACG 20 7.8513444E-4 44.000004 1 CTATGAC 20 7.8513444E-4 44.000004 40 GATGTAC 20 7.8513444E-4 44.000004 9 CCGGCTA 20 7.8513444E-4 44.000004 22 TACGGGA 80 0.0 44.000004 4 CTAGTAA 20 7.8513444E-4 44.000004 15 ATATACG 20 7.8513444E-4 44.000004 1 GCGATCG 20 7.8513444E-4 44.000004 9 CGTCGGG 20 7.8513444E-4 44.000004 3 TTCGGCA 20 7.8513444E-4 44.000004 18 GCTAACG 20 7.8513444E-4 44.000004 1 CGATAGT 40 8.292773E-9 44.000004 10 CGACGGT 70 0.0 44.0 28 AGGCGAT 25 4.438489E-5 44.0 6 ACGGGAA 45 4.783942E-10 44.0 5 TTGAGCG 30 2.5242553E-6 44.0 1 CGTAGTA 25 4.438489E-5 44.0 29 CGGTCTA 70 0.0 44.0 31 ACGTAAG 25 4.438489E-5 44.0 1 TCGACGG 25 4.438489E-5 44.0 2 >>END_MODULE