##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545968_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 448730 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.0476723196577 31.0 28.0 33.0 25.0 33.0 2 28.830234216566755 31.0 28.0 33.0 16.0 33.0 3 28.234936375994472 31.0 27.0 33.0 16.0 34.0 4 32.09935596015421 35.0 32.0 35.0 25.0 37.0 5 33.65919595302297 35.0 33.0 35.0 28.0 37.0 6 33.558939674191606 35.0 33.0 37.0 28.0 37.0 7 34.394410892964586 35.0 35.0 37.0 31.0 37.0 8 34.81423350344305 35.0 35.0 37.0 32.0 37.0 9 36.674320861096874 39.0 37.0 39.0 32.0 39.0 10 36.35842934504045 39.0 35.0 39.0 32.0 39.0 11 36.410703541104894 39.0 35.0 39.0 32.0 39.0 12 35.0372807701736 37.0 34.0 39.0 29.0 39.0 13 35.05947451697011 37.0 34.0 39.0 27.0 39.0 14 35.72984868406392 38.0 33.0 40.0 27.0 41.0 15 36.422173690192324 38.0 35.0 40.0 31.0 41.0 16 36.115940543311126 37.0 34.0 40.0 31.0 41.0 17 35.713373297974286 37.0 34.0 40.0 30.0 41.0 18 35.38538542107726 37.0 34.0 39.0 29.0 40.0 19 34.83185211597174 37.0 33.0 39.0 27.0 40.0 20 35.102841352260825 35.0 34.0 39.0 29.0 40.0 21 35.241875961045615 35.0 34.0 39.0 30.0 40.0 22 35.656515053595705 36.0 34.0 39.0 31.0 40.0 23 36.040295946337444 36.0 35.0 40.0 31.0 41.0 24 35.62765360016045 35.0 34.0 40.0 31.0 41.0 25 35.25680476010073 35.0 34.0 39.0 30.0 41.0 26 35.41319947407127 35.0 34.0 39.0 30.0 41.0 27 35.74537026719854 36.0 34.0 40.0 31.0 41.0 28 35.684371448309676 36.0 35.0 40.0 31.0 41.0 29 35.83190114322644 36.0 35.0 40.0 31.0 41.0 30 35.50035210482918 36.0 35.0 40.0 30.0 41.0 31 34.81105341742251 35.0 34.0 39.0 29.0 41.0 32 34.73478929423038 35.0 34.0 40.0 27.0 41.0 33 34.39906625364919 35.0 34.0 40.0 24.0 41.0 34 33.94451229024135 35.0 34.0 40.0 21.0 41.0 35 33.63550687495822 35.0 33.0 40.0 18.0 41.0 36 33.17418492189067 35.0 33.0 40.0 17.0 41.0 37 33.05249704722216 35.0 33.0 40.0 15.0 41.0 38 32.920745214271385 35.0 33.0 40.0 15.0 41.0 39 32.72770262741515 35.0 33.0 39.0 15.0 40.0 40 32.476174982729034 35.0 32.0 39.0 15.0 40.0 41 32.171983152452476 35.0 31.0 39.0 12.0 40.0 42 32.33290620194772 35.0 32.0 39.0 12.0 40.0 43 32.148978227441894 35.0 32.0 39.0 12.0 40.0 44 31.85797027165556 35.0 31.0 39.0 10.0 40.0 45 31.827234639983956 35.0 31.0 39.0 10.0 40.0 46 31.683551356049296 35.0 31.0 38.0 10.0 40.0 47 31.64734918547902 35.0 31.0 38.0 10.0 40.0 48 31.6719809239409 35.0 31.0 38.0 10.0 40.0 49 31.738268000802265 35.0 31.0 38.0 10.0 40.0 50 31.885195997593208 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 2.0 13 7.0 14 15.0 15 45.0 16 100.0 17 264.0 18 543.0 19 899.0 20 1395.0 21 2226.0 22 3019.0 23 4196.0 24 6090.0 25 9130.0 26 13080.0 27 15138.0 28 14128.0 29 13783.0 30 14899.0 31 18060.0 32 23934.0 33 37044.0 34 59154.0 35 41272.0 36 41011.0 37 56974.0 38 60647.0 39 11672.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.975018385220512 21.485971519622044 27.569139571680072 23.96987052347737 2 38.41129409667283 19.826844650457957 28.949033940231317 12.81282731263789 3 27.8254184030486 18.825351547701292 40.44837652931607 12.900853519934035 4 24.11516947830544 24.544380808058296 37.959129097675664 13.3813206159606 5 20.21839413455753 29.127983419873864 37.80335613843514 12.850266307133465 6 18.189780045907337 35.84716867604128 35.55991353375081 10.403137744300581 7 75.40191206293316 4.72399884117398 17.565351101998974 2.308737993893878 8 76.86515276446862 3.414748289617365 17.04699930916141 2.673099636752613 9 73.35123570966951 4.510061729770686 18.521382568582446 3.617319991977358 10 46.258551913177186 20.731843201925436 22.872997125220067 10.136607759677311 11 40.41717736723642 18.52762240099837 29.28509348606066 11.770106745704544 12 36.09052214026252 18.932320103402937 31.845876139326545 13.131281617008 13 20.91591825819535 32.925812849597754 33.03768413076906 13.120584761437836 14 14.758317919461591 34.66984600985002 36.8194682771377 13.752367793550688 15 14.056559623827244 19.922002094800884 52.00900318677155 14.012435094600317 16 16.76152697613264 16.785594901165513 49.08073897443897 17.372139148262875 17 16.762864083078913 17.087781071022665 36.7530586321396 29.39629621375883 18 21.162837340939987 19.825284692353975 40.683038798386555 18.32883916831948 19 26.25142067613041 21.66336104116061 33.68150112539834 18.40371715731063 20 26.78470349653466 21.718405277115416 33.327836338109776 18.169054888240144 21 20.60281238161032 25.153878724399974 35.965056938470795 18.27825195551891 22 20.422525795021503 21.12673545339068 34.61725313663004 23.83348561495777 23 17.316426358834935 25.958817106054866 33.952710984333564 22.77204555077664 24 18.388786129743945 21.16996857798676 43.98457869988634 16.45666659238295 25 16.839079179016338 22.43375749337018 41.20607046553607 19.52109286207742 26 15.538519822610478 28.711920308426002 35.47188732645466 20.27767254250886 27 16.093864907628195 28.943685512446237 36.42479887683017 18.5376507030954 28 15.002117085998263 24.637309740824104 43.13395583090054 17.22661734227709 29 15.861654001292536 21.81356272145834 42.376261894680546 19.948521382568583 30 18.67136139772246 26.15849174336461 37.7931049851804 17.377041873732534 31 26.80030307757449 22.895505092148955 32.90040781761861 17.403784012657947 32 27.177144385265084 22.716109910190983 33.532859403204604 16.573886301339336 33 26.095202014574465 24.239966126624026 31.491765649722552 18.173066209078957 34 19.39339914870858 24.364539923784903 34.3077128785684 21.934348048938116 35 19.694916765092596 25.378066989058006 34.762106389142694 20.164909856706707 36 27.53214627949992 24.048982684465045 30.181400842377375 18.237470193657657 37 19.828181757404227 30.595681144563546 30.752122657277205 18.82401444075502 38 21.376997303500993 30.22975954360083 27.92481001938805 20.46843313351013 39 21.523633365275334 28.12582176364406 29.10547545294498 21.245069418135625 40 24.157734049428388 24.44097787088004 28.901566643638716 22.499721436052862 41 18.727297038308112 22.658168609185925 30.2803467564014 28.33418759610456 42 21.590043010273437 23.213290843045932 28.663338756044837 26.533327390635797 43 21.628819111715288 24.050988344884452 29.58059412118646 24.739598422213803 44 19.946070019833755 27.15530497180933 30.478238584449446 22.420386423907473 45 17.485347536380452 32.81505582421501 27.507632652151624 22.19196398725291 46 21.692777393978563 28.45029304927239 29.37311969335681 20.483809863392242 47 21.1630601920977 25.62699173222205 30.47489581708377 22.735052258596482 48 21.838299199964347 23.833039912642345 32.95768056515054 21.370980322242776 49 21.26690883159138 22.683350790007353 33.66902146056649 22.380718917834777 50 18.94413121476166 28.96931339558309 30.508546341898246 21.578009047757003 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 333.0 1 467.0 2 601.0 3 7565.0 4 14529.0 5 10016.0 6 5503.0 7 5542.0 8 5581.0 9 5927.0 10 6273.0 11 6324.5 12 6376.0 13 5968.0 14 5560.0 15 5171.0 16 4782.0 17 4501.5 18 4221.0 19 3892.0 20 3563.0 21 3369.0 22 3175.0 23 3072.0 24 2969.0 25 2836.5 26 2704.0 27 3044.5 28 3385.0 29 3856.0 30 4327.0 31 4994.5 32 5662.0 33 6706.5 34 7751.0 35 8928.5 36 10106.0 37 10879.0 38 11652.0 39 15159.5 40 18667.0 41 25308.0 42 31949.0 43 36931.0 44 41913.0 45 42133.5 46 42354.0 47 39638.0 48 36922.0 49 34333.5 50 31745.0 51 29243.5 52 26742.0 53 24347.0 54 21952.0 55 19860.5 56 17769.0 57 17137.0 58 16505.0 59 15173.5 60 13842.0 61 12427.0 62 11012.0 63 9919.0 64 8826.0 65 7552.0 66 6278.0 67 5357.5 68 4437.0 69 3793.0 70 3149.0 71 2721.5 72 2294.0 73 1873.0 74 1452.0 75 1158.5 76 865.0 77 650.5 78 436.0 79 352.0 80 268.0 81 199.5 82 131.0 83 102.0 84 73.0 85 57.5 86 42.0 87 31.0 88 20.0 89 18.0 90 16.0 91 13.5 92 11.0 93 8.5 94 6.0 95 3.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 448730.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.10995317213372 #Duplication Level Percentage of deduplicated Percentage of total 1 74.88129058927356 27.039598966476053 2 8.47654414543742 6.12175224306539 3 3.823122880386124 4.141583645461678 4 2.294432748936847 3.3140743648287825 5 1.518997382042423 2.7425462167072805 6 1.1282214127489774 2.4444013429298477 7 0.871976346456667 2.2040917526430945 8 0.7183725146163555 2.0752318290355634 9 0.6410116932141422 2.083221200227754 >10 5.391050834715638 39.325822449670454 >50 0.23388626148129854 5.178039940192383 >100 0.019852414767643378 1.0582789944392494 >500 6.203879614888556E-4 0.11693938084193231 >1k 0.0 0.0 >5k 6.203879614888556E-4 2.1544176734805807 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9617 2.1431595837140374 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 522 0.11632830432554096 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04011320838811758 0.0 2 0.0 0.0 0.0 0.16646981481068795 0.0 3 0.0 0.0 0.0 0.2304280970739643 0.0 4 0.0 0.0 0.0 0.370601475274664 0.0 5 0.0 0.0 0.0 0.7071067234194282 0.0 6 0.0 0.0 0.0 1.0213268557930157 0.0 7 0.0 0.0 0.0 1.2372696276157156 0.0 8 0.0 0.0 0.0 1.8213625119782497 0.0 9 0.0 0.0 0.0 2.109286207741849 0.0 10 0.0 0.0 0.0 2.6298665121565308 0.0 11 0.0 0.0 0.0 2.9641432487241772 0.0 12 0.0 0.0 0.0 3.319813696432153 0.0 13 0.0 0.0 0.0 3.459764223475141 0.0 14 0.0 0.0 0.0 3.5125799478528292 0.0 15 0.0 0.0 0.0 3.588126490317117 0.0 16 0.0 0.0 0.0 3.71983152452477 0.0 17 0.0 0.0 0.0 3.8713703117687697 0.0 18 0.0 0.0 0.0 4.123860673456199 0.0 19 0.0 0.0 0.0 4.223475140953357 0.0 20 0.0 0.0 0.0 4.338243487174916 0.0 21 0.0 0.0 0.0 4.467497158647739 0.0 22 0.0 0.0 0.0 4.6085619414792856 0.0 23 0.0 0.0 0.0 4.752078087045662 0.0 24 0.0 0.0 0.0 4.86038374969358 0.0 25 0.0 0.0 0.0 4.951084170882268 0.0 26 0.0 0.0 0.0 5.052481447641121 0.0 27 0.0 0.0 0.0 5.167249793862679 0.0 28 0.0 0.0 0.0 5.271766986829497 0.0 29 0.0 0.0 0.0 5.391660909678426 0.0 30 0.0 0.0 0.0 5.546765315445814 0.0 31 0.0 0.0 0.0 5.674013326499231 0.0 32 2.2285115771176431E-4 0.0 0.0 5.7887816727207895 0.0 33 2.2285115771176431E-4 0.0 0.0 5.891293205268202 0.0 34 4.4570231542352863E-4 0.0 0.0 6.009404318855436 0.0 35 4.4570231542352863E-4 0.0 0.0 6.154480422525795 0.0 36 4.4570231542352863E-4 0.0 0.0 6.281059880106077 0.0 37 4.4570231542352863E-4 0.0 0.0 6.409867849263477 0.0 38 4.4570231542352863E-4 0.0 0.0 6.578120473335859 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGC 20 7.851347E-4 44.0 26 TTAATCG 20 7.851347E-4 44.0 20 TACTTAG 25 4.4384877E-5 44.0 1 ACGTTAG 35 1.4434409E-7 44.0 1 TACGGGA 45 4.783942E-10 44.0 4 CGGATGG 20 7.851347E-4 44.0 2 CACTAGT 25 4.4384877E-5 44.0 36 TGTTACG 20 7.851347E-4 44.0 1 CGATGGT 20 7.851347E-4 44.0 10 CGATGAT 20 7.851347E-4 44.0 10 CAATCGT 20 7.851347E-4 44.0 17 ATCATAC 20 7.851347E-4 44.0 18 GATTAGT 20 7.851347E-4 44.0 43 GGCCTAT 20 7.851347E-4 44.0 8 TATCCGG 25 4.4384877E-5 44.0 2 GCATATC 20 7.851347E-4 44.0 28 CGTTTTT 6165 0.0 43.10787 1 ATGGGCG 105 0.0 41.90476 5 CGACCCG 95 0.0 41.68421 32 ACGGGAT 90 0.0 41.555557 5 >>END_MODULE