##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545966_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 385132 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.938140689425964 28.0 25.0 30.0 16.0 33.0 2 26.13334648899598 30.0 25.0 31.0 10.0 33.0 3 26.364649003458556 30.0 25.0 31.0 16.0 33.0 4 27.92764039342355 32.0 19.0 35.0 10.0 35.0 5 31.179123001983736 33.0 30.0 35.0 19.0 37.0 6 29.879166104088988 33.0 28.0 35.0 17.0 37.0 7 29.84574898995669 32.0 28.0 35.0 17.0 35.0 8 32.40739538651683 33.0 32.0 35.0 28.0 35.0 9 27.095769762055607 30.0 23.0 34.0 10.0 35.0 10 31.68822377782163 34.0 30.0 37.0 17.0 37.0 11 33.73259298110778 35.0 32.0 37.0 27.0 39.0 12 33.08119553815315 35.0 31.0 37.0 23.0 39.0 13 32.94528629145332 35.0 31.0 38.0 22.0 39.0 14 32.68630755169656 35.0 30.0 38.0 21.0 40.0 15 31.747432049271417 34.0 27.0 38.0 18.0 40.0 16 30.426090275541892 33.0 26.0 38.0 17.0 40.0 17 30.549634930361538 32.0 26.0 37.0 17.0 40.0 18 31.49623246055898 34.0 28.0 38.0 18.0 39.0 19 31.17486212519344 34.0 27.0 37.0 18.0 39.0 20 31.838494334410022 34.0 30.0 37.0 21.0 39.0 21 32.61029205571077 34.0 31.0 37.0 23.0 39.0 22 32.985516654030306 34.0 31.0 37.0 25.0 39.0 23 34.28920474019297 35.0 33.0 38.0 29.0 40.0 24 33.98123760165346 35.0 33.0 38.0 27.0 40.0 25 32.72680275853474 35.0 31.0 37.0 23.0 39.0 26 26.43689436349096 33.0 21.0 36.0 0.0 39.0 27 29.65762128309255 34.0 24.0 37.0 15.0 39.0 28 31.1794190043933 34.0 27.0 36.0 20.0 39.0 29 32.510915737980746 34.0 30.0 37.0 23.0 39.0 30 32.23516352834872 34.0 30.0 37.0 22.0 39.0 31 31.162803921772277 34.0 29.0 36.0 20.0 38.0 32 31.375676391470975 34.0 30.0 37.0 19.0 39.0 33 31.128023638648568 34.0 29.0 37.0 18.0 39.0 34 31.041326090794843 34.0 30.0 37.0 15.0 39.0 35 30.21440441199381 34.0 28.0 37.0 10.0 39.0 36 29.884247478786495 34.0 27.0 37.0 10.0 39.0 37 29.930766594310523 34.0 27.0 37.0 10.0 39.0 38 29.654588556650708 33.0 27.0 36.0 10.0 38.0 39 29.583942648234892 33.0 26.0 36.0 10.0 39.0 40 29.47093983361549 33.0 26.0 36.0 10.0 38.0 41 28.909760809280975 33.0 24.0 36.0 9.0 38.0 42 29.066847210826417 33.0 25.0 36.0 9.0 38.0 43 28.62420936198498 33.0 24.0 35.0 8.0 38.0 44 28.37520382622062 32.0 23.0 35.0 8.0 38.0 45 27.823473510380857 31.0 23.0 35.0 8.0 38.0 46 27.41369971853806 31.0 23.0 35.0 8.0 38.0 47 27.500314177996117 31.0 23.0 34.0 8.0 37.0 48 27.58424903669391 31.0 23.0 34.0 8.0 37.0 49 27.421042655505126 31.0 23.0 34.0 8.0 37.0 50 29.21876914927869 33.0 25.0 36.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 5.0 12 22.0 13 54.0 14 108.0 15 306.0 16 586.0 17 994.0 18 1793.0 19 2720.0 20 4193.0 21 5864.0 22 7682.0 23 10265.0 24 13273.0 25 16621.0 26 19507.0 27 22063.0 28 24038.0 29 28075.0 30 32970.0 31 38354.0 32 41444.0 33 40002.0 34 33757.0 35 25488.0 36 12398.0 37 2479.0 38 70.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.100744679746168 22.3845330951466 27.32699438114724 25.187727843959994 2 38.102001391730624 17.247333381801564 30.813850835557677 13.83681439091013 3 29.074966504990496 14.721186502290124 42.01053145415079 14.193315538568593 4 25.431280703758713 24.527694400880737 36.63055783471641 13.410467060644143 5 19.462937382507818 29.481580341285586 38.44084625530987 12.614636020896732 6 18.2911313523675 34.076887924140294 36.93305152519136 10.698929198300842 7 77.08629768494959 3.6753632520798067 17.540219976527528 1.6981190864430895 8 79.2021956108555 2.3677596252713355 16.59301226592441 1.8370324979487553 9 67.23902454223487 2.9935191051379784 16.747764402854088 13.019691949773065 10 47.40816135766438 20.66382435113156 22.8508667158273 9.077147575376754 11 41.82903523986582 17.99746580393216 29.182981419357517 10.99051753684451 12 36.76505717520227 19.287153495424946 31.95216185619476 11.995627473178027 13 20.431955796973504 34.10778642127894 32.786161627701674 12.674096154045886 14 14.219280662214514 35.247395698098316 37.10727750485548 13.426046134831694 15 12.632032653739497 18.382268936364675 52.200024926518694 16.785673483377128 16 14.876457941692719 15.01692926061714 49.08914346250117 21.017469335188974 17 15.756935284525825 16.072930839296657 37.49467714965259 30.67545672652493 18 20.751326817818306 19.36141374905227 41.71115357851335 18.17610585461608 19 27.125245370418455 20.754702283892275 34.208790752261564 17.911261593427707 20 27.73360821744233 21.209870901405232 33.652617803765985 17.403903077386452 21 20.50154232834457 24.93275032975707 36.158252235597146 18.407455106301214 22 19.93809914522813 20.84376265799778 34.62215552070459 24.595982676069504 23 16.91264293800567 25.88567036756229 34.37626579977774 22.8254208946543 24 17.613960927681937 20.411962651766146 46.03434666555882 15.939729754993092 25 16.124341784115575 21.336840356033775 42.94683381282262 19.59198404702803 26 12.361995367821942 40.79068994526552 29.522605236646136 17.3247094502664 27 15.233997694297019 30.232232065889097 36.69027761910203 17.84349262071186 28 14.18890146754879 24.625063614552932 44.49980785808502 16.68622705981326 29 15.127021384875835 21.729952328032986 43.49132245567753 19.651703831413645 30 18.286717281347695 26.291245598911544 38.19261967325488 17.229417446485883 31 27.730232751368362 22.625749093817184 33.03750402459416 16.606514130220287 32 27.79177009440919 22.088271034346665 33.6575511772587 16.46240769398544 33 26.628532555072027 23.625146702948598 31.624481995783267 18.121838746196108 34 19.153173457412002 23.70408067883219 34.24072785434604 22.902018009409762 35 19.520579957001754 24.754629581546066 34.98904271782142 20.735747743630757 36 27.985210265571286 23.49012805998982 30.10032923776783 18.424332436671065 37 19.155510318540138 31.396248558935635 30.175108793868077 19.273132328656146 38 20.72120727438904 31.029101710582346 27.538090836388562 20.71160017864005 39 21.202600666784374 28.532035769554337 28.77377107069784 21.491592492963452 40 24.182358256390017 23.866882004092105 28.893989593178443 23.056770146339435 41 18.080813850835558 21.925469709086755 30.144729599202353 29.848986840875334 42 21.152487978147754 22.366617159830916 27.674407735529638 28.806487126491696 43 21.29971022922011 23.190490533115916 29.55064757018373 25.959151667480242 44 19.139152290643207 26.853390525845683 30.763738146921053 23.24371903659005 45 16.902256888547303 34.03534372630683 26.705648972300406 22.356750412845468 46 20.70536854896503 28.6836720916465 28.82518201551676 21.78577734387171 47 20.621760850825172 25.179159353156837 29.721757735010335 24.477322061007655 48 21.224671021883406 23.25436473728488 33.49630775941755 22.024656481414166 49 20.749768910399553 22.640808865531817 33.52305183677285 23.086370387295784 50 18.362535442393778 29.936229656325626 30.15225948505967 21.54897541622093 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 189.0 1 291.5 2 394.0 3 4434.5 4 8475.0 5 6608.0 6 4741.0 7 4634.0 8 4527.0 9 4877.0 10 5227.0 11 5479.0 12 5731.0 13 5628.0 14 5525.0 15 5346.5 16 5168.0 17 4879.5 18 4591.0 19 4300.0 20 4009.0 21 3815.5 22 3622.0 23 3506.5 24 3391.0 25 3172.0 26 2953.0 27 3093.5 28 3234.0 29 3721.5 30 4209.0 31 4562.5 32 4916.0 33 5823.5 34 6731.0 35 7601.5 36 8472.0 37 9150.5 38 9829.0 39 12736.0 40 15643.0 41 21023.5 42 26404.0 43 30700.5 44 34997.0 45 35390.0 46 35783.0 47 33560.0 48 31337.0 49 29259.0 50 27181.0 51 24949.0 52 22717.0 53 20689.0 54 18661.0 55 17212.5 56 15764.0 57 14874.0 58 13984.0 59 12985.0 60 11986.0 61 10827.0 62 9668.0 63 8611.5 64 7555.0 65 6597.0 66 5639.0 67 4774.5 68 3910.0 69 3394.0 70 2878.0 71 2459.5 72 2041.0 73 1660.5 74 1280.0 75 1048.0 76 816.0 77 611.5 78 407.0 79 327.0 80 247.0 81 180.0 82 113.0 83 96.0 84 79.0 85 59.5 86 40.0 87 37.0 88 34.0 89 24.5 90 15.0 91 13.5 92 12.0 93 9.0 94 6.0 95 3.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 385132.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.95474910633825 #Duplication Level Percentage of deduplicated Percentage of total 1 82.17968840663103 42.69625092803569 2 7.073914271743896 7.350468823763991 3 2.8802062780050726 4.489211836447616 4 1.5890991571304554 3.3024499205522555 5 1.1345736021993296 2.947324342247029 6 0.7476787599148386 2.330727743010813 7 0.6208166208890542 2.257806024553487 8 0.49569797018654954 2.0603090938850652 9 0.37396360324104816 1.748626666316179 >10 2.841151944745824 26.88749944651882 >50 0.05834712490423696 1.947400390160294 >100 0.003781758095644985 0.30594788487672514 >500 5.402511565207121E-4 0.2674938846674487 >1k 0.0 0.0 >5k 5.402511565207121E-4 1.4084830149645935 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5018 1.3029299045522054 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 953 0.24744762834560619 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03011954342926581 0.0 2 0.0 0.0 0.0 0.13657655037753288 0.0 3 0.0 0.0 0.0 0.1908436587975032 0.0 4 0.0 0.0 0.0 0.27315310075506577 0.0 5 0.0 0.0 0.0 0.4998286301839369 0.0 6 0.0 0.0 0.0 0.680805541995991 0.0 7 0.0 0.0 0.0 0.8093329040432891 0.0 8 0.0 0.0 0.0 1.1837499870174382 0.0 9 0.0 0.0 0.0 1.403155281825452 0.0 10 0.0 0.0 0.0 1.7451159602422026 0.0 11 0.0 0.0 0.0 1.980100329237768 0.0 12 0.0 0.0 0.0 2.2088530685583123 0.0 13 0.0 0.0 0.0 2.302067862447161 0.0 14 0.0 0.0 0.0 2.3342646157681 0.0 15 0.0 0.0 0.0 2.383598350695346 0.0 16 0.0 0.0 0.0 2.4726587248008474 0.0 17 0.0 0.0 0.0 2.599108876956472 0.0 18 0.0 0.0 0.0 2.764766365817434 0.0 19 0.0 0.0 0.0 2.8250054526759656 0.0 20 0.0 0.0 0.0 2.9026411723772627 0.0 21 0.0 0.0 0.0 2.975603169822295 0.0 22 0.0 0.0 0.0 3.0527195870506736 0.0 23 0.0 0.0 0.0 3.137365890136369 0.0 24 0.0 0.0 0.0 3.2059138165615946 0.0 25 0.0 0.0 0.0 3.2599212737451055 0.0 26 0.0 0.0 0.0 3.3204200118400964 0.0 27 0.0 0.0 0.0 3.398575034014312 0.0 28 0.0 0.0 0.0 3.4668633092030783 0.0 29 0.0 0.0 0.0 3.550730658579396 0.0 30 0.0 0.0 0.0 3.652513943271398 0.0 31 0.0 0.0 0.0 3.7389778050123073 0.0 32 0.0 0.0 0.0 3.815834571004227 0.0 33 0.0 0.0 0.0 3.905154596346188 0.0 34 0.0 0.0 0.0 3.986685084594373 0.0 35 0.0 0.0 0.0 4.103787792237466 0.0 36 0.0 0.0 0.0 4.189732351505458 0.0 37 0.0 0.0 0.0 4.282947145394306 0.0 38 0.0 0.0 0.0 4.409397297549931 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATC 20 7.849954E-4 44.000004 22 ACGTTAG 20 7.849954E-4 44.000004 1 CCTAACG 20 7.849954E-4 44.000004 1 GCGTTAG 20 7.849954E-4 44.000004 1 TCGTGAT 20 7.849954E-4 44.000004 28 GGAACCT 20 7.849954E-4 44.000004 8 GGTGCGA 20 7.849954E-4 44.000004 41 AGTACGG 20 7.849954E-4 44.000004 2 ACGACGG 40 8.287316E-9 44.000004 27 TCACGAC 35 1.4427314E-7 44.0 25 CTCACGA 35 1.4427314E-7 44.0 24 CGTGCGG 45 4.783942E-10 44.0 2 AGGCGGT 35 1.4427314E-7 44.0 6 CGACAGG 25 4.4373097E-5 44.0 2 ATCGTAG 35 1.4427314E-7 44.0 1 ATCCGGT 25 4.4373097E-5 44.0 26 GTCCGGT 25 4.4373097E-5 44.0 26 ATAGTCT 25 4.4373097E-5 44.0 24 TACCGGG 55 1.8189894E-12 44.0 3 TAATCGT 25 4.4373097E-5 44.0 21 >>END_MODULE