##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545964_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 937462 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.209115676155406 31.0 28.0 33.0 25.0 33.0 2 28.72544700478526 31.0 28.0 33.0 16.0 33.0 3 28.16604619707252 31.0 27.0 33.0 16.0 34.0 4 32.1065963207042 35.0 32.0 35.0 25.0 37.0 5 33.664649873808216 35.0 33.0 35.0 28.0 37.0 6 33.581382498703945 35.0 33.0 37.0 28.0 37.0 7 34.37627551836768 35.0 35.0 37.0 31.0 37.0 8 34.755483422261385 35.0 35.0 37.0 32.0 37.0 9 36.60942736878935 39.0 37.0 39.0 32.0 39.0 10 36.32335710674139 39.0 35.0 39.0 32.0 39.0 11 36.38005593826736 39.0 35.0 39.0 32.0 39.0 12 34.983544933021285 37.0 34.0 39.0 29.0 39.0 13 34.985607949975574 37.0 34.0 39.0 27.0 39.0 14 35.74454964574564 38.0 33.0 40.0 27.0 41.0 15 36.44712532347978 38.0 35.0 40.0 31.0 41.0 16 36.10970471336438 37.0 34.0 40.0 31.0 41.0 17 35.70103854876251 37.0 34.0 40.0 30.0 41.0 18 35.374726655587104 37.0 34.0 39.0 29.0 40.0 19 34.781320202845556 36.0 33.0 39.0 27.0 40.0 20 35.06761874081296 35.0 34.0 39.0 29.0 40.0 21 35.179431272947596 35.0 34.0 39.0 30.0 40.0 22 35.592291740891895 35.0 34.0 39.0 31.0 40.0 23 35.985358339858045 36.0 35.0 40.0 31.0 41.0 24 35.555033697365864 35.0 34.0 40.0 31.0 41.0 25 35.20742494095761 35.0 34.0 39.0 30.0 41.0 26 35.32150316492829 35.0 34.0 39.0 30.0 41.0 27 35.655773780697245 35.0 34.0 40.0 31.0 41.0 28 35.59600922490725 36.0 35.0 40.0 31.0 41.0 29 35.751925944731624 36.0 35.0 40.0 31.0 41.0 30 35.417608393726894 36.0 34.0 40.0 30.0 41.0 31 34.71969637169293 35.0 34.0 39.0 29.0 41.0 32 34.61136238055516 35.0 34.0 40.0 27.0 41.0 33 34.271516072118125 35.0 34.0 40.0 24.0 41.0 34 33.82345204392285 35.0 34.0 40.0 21.0 41.0 35 33.53432992483962 35.0 33.0 40.0 18.0 41.0 36 33.06255080205918 35.0 33.0 40.0 16.0 41.0 37 32.92465827948226 35.0 33.0 40.0 15.0 41.0 38 32.84369073093096 35.0 33.0 40.0 15.0 41.0 39 32.60984125223209 35.0 32.0 39.0 15.0 40.0 40 32.41853323121364 35.0 32.0 39.0 15.0 40.0 41 32.12915936859307 35.0 31.0 39.0 12.0 40.0 42 32.30664816280553 35.0 32.0 39.0 12.0 40.0 43 32.093509923602234 35.0 31.0 39.0 10.0 40.0 44 31.811481425380443 35.0 31.0 39.0 10.0 40.0 45 31.786819092400545 35.0 31.0 39.0 10.0 40.0 46 31.63806532958136 35.0 31.0 38.0 10.0 40.0 47 31.647800124165034 35.0 31.0 38.0 10.0 40.0 48 31.685658725367002 35.0 31.0 38.0 10.0 40.0 49 31.75628238797946 35.0 31.0 38.0 10.0 40.0 50 31.875424283864305 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 0.0 12 8.0 13 17.0 14 39.0 15 91.0 16 261.0 17 623.0 18 1060.0 19 1995.0 20 3140.0 21 4408.0 22 6353.0 23 9148.0 24 13045.0 25 19958.0 26 28281.0 27 31519.0 28 30423.0 29 29093.0 30 30791.0 31 36910.0 32 49795.0 33 77828.0 34 125737.0 35 86250.0 36 84260.0 37 116900.0 38 125146.0 39 24380.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.66681316149348 22.625450418256953 27.47748708747661 25.230249332772953 2 36.97248528473687 21.129603119913128 29.372603902878197 12.525307692471802 3 26.613025381295458 19.072986425049763 41.23132457635616 13.082663617298621 4 23.892808455169384 25.042401718683 37.65965980487743 13.405130021270196 5 20.35943856924334 28.601692655275627 38.20165510708701 12.837213668394027 6 18.765133946762642 35.62203054630481 35.27374976265705 10.339085744275502 7 74.45976476913198 4.9333199639025365 17.8238691274953 2.7830461394701866 8 75.68893459148211 3.5992925579916837 17.583859399100977 3.1279134514252314 9 72.28730337869695 4.967988035781716 19.10264096038026 3.6420676251410726 10 45.292289180788124 21.257074953438114 23.199767030556973 10.250868835216789 11 39.97836712314739 18.176203408778168 30.10607363285125 11.739355835223188 12 36.14781185797398 18.853990881763742 32.10572801884236 12.892469241419919 13 19.302009041433145 35.7959042606527 31.9435881134382 12.958498584475958 14 13.928777913131412 36.015113145919514 35.883481143769025 14.172627797180045 15 12.544295128762553 21.045973063441505 52.68480215731412 13.724929650481831 16 14.417864404103847 17.233338524654865 50.568129694856964 17.780667376384322 17 14.978207116661796 17.554098192780078 36.86816105612814 30.59953363442998 18 19.746933742381025 20.564353541796894 41.37799718815269 18.310715527669387 19 24.721962063528974 22.332745220606277 33.89086704314415 19.0544256727206 20 26.74551075136912 20.395920047959276 34.19626608865213 18.662303112019472 21 19.440147973997878 25.376495260607896 36.220774815405846 18.962581949988373 22 20.07910720647877 22.27204942707011 33.91028116339649 23.73856220305463 23 16.71641090518869 26.943705451527634 33.906867691703766 22.433015951579904 24 17.077385536693754 21.164164520801908 45.45261567935553 16.3058342631488 25 15.599885648698294 22.60411622017746 42.13621458789796 19.659783543226286 26 14.611258909694472 29.960681072939487 36.02610025793045 19.401959759435584 27 15.445319383612349 29.676296212539814 36.95691132013884 17.921473083708996 28 13.873522340105518 24.971465510068676 44.73237315219177 16.42263899763404 29 14.771478737271485 21.017918592966968 43.536378007855255 20.674224661906297 30 17.106613388062662 26.7590579671496 38.28389844068346 17.850430204104274 31 25.11589803106686 23.838512921057067 32.88687968152309 18.158709366352983 32 25.871021972090603 23.16424559075461 33.63741676995974 17.32731566719504 33 24.353947146657678 24.850927290919525 31.72021905954588 19.074906502876917 34 18.120947835752276 24.703721324171006 34.37152652587518 22.803804314201535 35 19.09752075284118 24.035747582302 35.72251461925923 21.144217045597582 36 27.17859497238288 23.56554185662992 30.345123322331997 18.910739848655197 37 18.770787509253708 29.474261356726995 33.34204479754913 18.412906336470172 38 20.425681254280175 29.410792117440494 29.38764451252424 20.775882115755092 39 20.216712784091513 28.35464264151507 31.42271366732732 20.005930907066098 40 22.916342209070876 24.85572748548741 29.774753536676684 22.453176768765026 41 17.60860706887319 22.968610994365637 31.944548152351775 27.478233784409394 42 21.572074388081862 23.562021713946805 28.40563137492506 26.460272523046267 43 20.982930508116596 25.485192999822925 29.05237758970497 24.47949890235551 44 19.558766115319877 28.34365552950413 30.21349132018151 21.884087034994483 45 16.997915648847634 34.06484742848244 27.029362256816807 21.90787466585312 46 20.991037503386803 29.554157928534703 29.185929669682608 20.26887489839588 47 20.154950280651377 25.78387177293586 30.891918819109463 23.16925912730329 48 21.689199135538296 23.05725458738594 33.555066765372885 21.698479511702875 49 19.93488802746138 23.25736936537161 33.9861242375691 22.821618369597914 50 18.427200249183436 29.681416420078893 31.07176610891961 20.819617221818056 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 504.0 1 789.5 2 1075.0 3 13480.0 4 25885.0 5 18681.5 6 11478.0 7 11945.5 8 12413.0 9 13170.0 10 13927.0 11 13838.0 12 13749.0 13 13001.0 14 12253.0 15 11372.0 16 10491.0 17 9847.0 18 9203.0 19 8443.5 20 7684.0 21 7219.5 22 6755.0 23 6947.5 24 7140.0 25 6884.0 26 6628.0 27 7798.5 28 8969.0 29 10039.5 30 11110.0 31 13044.5 32 14979.0 33 17585.0 34 20191.0 35 22832.0 36 25473.0 37 26158.5 38 26844.0 39 33594.0 40 40344.0 41 53655.5 42 66967.0 43 77434.0 44 87901.0 45 88424.0 46 88947.0 47 82352.0 48 75757.0 49 74337.0 50 72917.0 51 69778.0 52 66639.0 53 57738.0 54 48837.0 55 42422.5 56 36008.0 57 31651.5 58 27295.0 59 24540.0 60 21785.0 61 19206.5 62 16628.0 63 15185.5 64 13743.0 65 11357.5 66 8972.0 67 7636.5 68 6301.0 69 5218.5 70 4136.0 71 3564.0 72 2992.0 73 2574.5 74 2157.0 75 1648.5 76 1140.0 77 878.0 78 616.0 79 482.5 80 349.0 81 252.0 82 155.0 83 108.0 84 61.0 85 42.0 86 23.0 87 18.5 88 14.0 89 11.0 90 8.0 91 12.0 92 16.0 93 9.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 937462.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.583556465547833 #Duplication Level Percentage of deduplicated Percentage of total 1 76.86304297585681 21.970191290142328 2 7.2743480515803 4.158534765647866 3 3.225903514088028 2.7662338574203296 4 2.0416463886952214 2.334300593358067 5 1.4522706848332612 2.0755530561595665 6 1.0704128754985445 1.835772412095724 7 0.8349720282478765 1.6706529081603325 8 0.6760995844858027 1.546026451958669 9 0.5371769159190691 1.3818984037345396 >10 4.814648343076012 30.362184642833828 >50 0.9928949535577636 19.773736404743808 >100 0.21583034960773115 8.177364769774437 >500 0.0 0.0 >1k 3.766672768023225E-4 0.13910305564762687 >5k 0.0 0.0 >10k+ 3.766672768023225E-4 1.8084473883229015 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16797 1.7917526257064287 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1292 0.13781891959354087 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.051095404400391696 0.0 2 1.0667099039747744E-4 0.0 0.0 0.1872075881475729 0.0 3 1.0667099039747744E-4 0.0 0.0 0.2483300656453275 0.0 4 1.0667099039747744E-4 0.0 0.0 0.3654548131017577 0.0 5 1.0667099039747744E-4 0.0 0.0 0.6417326782312243 0.0 6 1.0667099039747744E-4 0.0 0.0 0.939024728468994 0.0 7 1.0667099039747744E-4 0.0 0.0 1.1520466962927565 0.0 8 1.0667099039747744E-4 0.0 0.0 1.71473617063945 0.0 9 1.0667099039747744E-4 0.0 0.0 2.0028545157030364 0.0 10 1.0667099039747744E-4 0.0 0.0 2.475727016135054 0.0 11 1.0667099039747744E-4 0.0 0.0 2.7497647904661737 0.0 12 1.0667099039747744E-4 0.0 0.0 3.0549504939933567 0.0 13 2.1334198079495488E-4 0.0 0.0 3.1641815881603734 0.0 14 2.1334198079495488E-4 0.0 0.0 3.1994896859819386 0.0 15 2.1334198079495488E-4 0.0 0.0 3.2527185101902796 0.0 16 3.2001297119243235E-4 0.0 0.0 3.357362751770205 0.0 17 3.2001297119243235E-4 0.0 0.0 3.4937949484885786 0.0 18 3.2001297119243235E-4 0.0 0.0 3.71321717573619 0.0 19 4.2668396158990977E-4 0.0 0.0 3.7920470376399256 0.0 20 5.333549519873872E-4 0.0 0.0 3.8918910846519648 0.0 21 5.333549519873872E-4 0.0 0.0 4.001975546742162 0.0 22 6.400259423848647E-4 0.0 0.0 4.112700034774742 0.0 23 6.400259423848647E-4 0.0 0.0 4.225451271624877 0.0 24 6.400259423848647E-4 0.0 0.0 4.318255033270682 0.0 25 6.400259423848647E-4 0.0 0.0 4.390577964760172 0.0 26 6.400259423848647E-4 0.0 0.0 4.464714303086418 0.0 27 6.400259423848647E-4 0.0 0.0 4.545250900836514 0.0 28 7.466969327823421E-4 0.0 0.0 4.622587368874685 0.0 29 7.466969327823421E-4 0.0 0.0 4.7100575810006164 0.0 30 7.466969327823421E-4 0.0 0.0 4.8427562930550785 0.0 31 8.533679231798195E-4 0.0 0.0 4.9363067516336665 0.0 32 8.533679231798195E-4 0.0 0.0 5.0236702927692 0.0 33 8.533679231798195E-4 0.0 0.0 5.10655365230804 0.0 34 8.533679231798195E-4 0.0 0.0 5.203517582579347 0.0 35 8.533679231798195E-4 0.0 0.0 5.3323761389795 0.0 36 8.533679231798195E-4 0.0 0.0 5.42709997845246 0.0 37 8.533679231798195E-4 0.0 0.0 5.522357172877407 0.0 38 8.533679231798195E-4 0.0 0.0 5.627641440399717 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 30 2.5272147E-6 44.000004 1 TTACGCC 30 2.5272147E-6 44.000004 18 GCGTAAG 60 0.0 44.000004 1 CTTACGC 30 2.5272147E-6 44.000004 17 CTAGACG 35 1.4456964E-7 44.0 1 TACCCGC 20 7.8557397E-4 44.0 17 GCGAAAA 20 7.8557397E-4 44.0 9 CCGTCTA 20 7.8557397E-4 44.0 44 TTACGAT 20 7.8557397E-4 44.0 2 TAATGCG 20 7.8557397E-4 44.0 1 TCGAACG 20 7.8557397E-4 44.0 1 TACGTAG 80 0.0 44.0 1 CGTTTTT 12655 0.0 43.200317 1 TACGGGA 125 0.0 42.24 4 CGTAAGG 150 0.0 41.06667 2 TCGTAAG 70 0.0 40.857143 1 ACGTTAG 65 0.0 40.615383 1 GCGTTAG 65 0.0 40.615383 1 ATGGGAC 385 0.0 40.0 5 TAGAACG 55 7.8216544E-11 40.0 1 >>END_MODULE