##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545963_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 920637 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.109217856766566 31.0 28.0 33.0 25.0 33.0 2 28.61493618005794 31.0 28.0 33.0 16.0 33.0 3 28.074242073694627 31.0 26.0 33.0 16.0 34.0 4 32.01334728019838 35.0 32.0 35.0 25.0 37.0 5 33.599825990048195 35.0 33.0 35.0 28.0 37.0 6 33.51224749819961 35.0 33.0 37.0 28.0 37.0 7 34.292041271424026 35.0 35.0 37.0 31.0 37.0 8 34.73378758403149 35.0 35.0 37.0 32.0 37.0 9 36.59497825961807 39.0 37.0 39.0 32.0 39.0 10 36.400997352919774 39.0 35.0 39.0 32.0 39.0 11 36.39222733824515 38.0 35.0 39.0 32.0 39.0 12 35.15917674392839 37.0 34.0 39.0 30.0 39.0 13 35.058719125996454 37.0 34.0 39.0 27.0 39.0 14 35.79953010795786 38.0 34.0 40.0 27.0 41.0 15 36.414344633118155 38.0 35.0 40.0 31.0 41.0 16 36.06581312721518 37.0 34.0 40.0 31.0 41.0 17 35.649083189139695 37.0 34.0 40.0 30.0 41.0 18 35.301918128426294 37.0 33.0 39.0 29.0 40.0 19 34.67846936414678 36.0 33.0 39.0 27.0 40.0 20 35.157724488587796 35.0 34.0 39.0 30.0 40.0 21 35.25255773991269 35.0 34.0 39.0 30.0 40.0 22 35.611327808897535 35.0 34.0 39.0 31.0 41.0 23 35.98749887306289 36.0 35.0 40.0 31.0 41.0 24 35.569359041620096 35.0 34.0 40.0 31.0 41.0 25 35.221616120142905 35.0 34.0 39.0 30.0 41.0 26 35.32851384421873 35.0 34.0 39.0 30.0 41.0 27 35.65657799979797 35.0 34.0 40.0 31.0 41.0 28 35.609359606446404 36.0 35.0 40.0 31.0 41.0 29 35.75063461494596 36.0 35.0 40.0 31.0 41.0 30 35.420983514675164 36.0 35.0 40.0 30.0 41.0 31 34.69498836131939 35.0 34.0 39.0 28.0 41.0 32 34.60857428063395 35.0 34.0 40.0 27.0 41.0 33 34.27907633518966 35.0 34.0 40.0 24.0 41.0 34 33.83773843545284 35.0 34.0 40.0 21.0 41.0 35 33.499809371120215 35.0 33.0 40.0 18.0 41.0 36 33.080995006718176 35.0 33.0 40.0 16.0 41.0 37 32.9744731093797 35.0 33.0 40.0 15.0 41.0 38 32.862674430856025 35.0 33.0 40.0 15.0 41.0 39 32.59583527492378 35.0 32.0 39.0 15.0 40.0 40 32.44870453827078 35.0 32.0 39.0 15.0 40.0 41 32.140656958171355 35.0 31.0 39.0 12.0 40.0 42 32.350192312496674 35.0 32.0 39.0 12.0 40.0 43 32.147280632866156 35.0 32.0 39.0 10.0 40.0 44 31.87066129212708 35.0 31.0 39.0 10.0 40.0 45 31.857029426364573 35.0 31.0 39.0 10.0 40.0 46 31.70763069483412 35.0 31.0 38.0 10.0 40.0 47 31.733358533276416 35.0 31.0 38.0 10.0 40.0 48 31.763526775482628 35.0 31.0 38.0 10.0 40.0 49 31.833828099457225 35.0 31.0 38.0 10.0 40.0 50 31.889214750221857 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 19.0 14 29.0 15 99.0 16 274.0 17 567.0 18 1103.0 19 2032.0 20 2969.0 21 4431.0 22 6256.0 23 9093.0 24 13004.0 25 19627.0 26 27498.0 27 31657.0 28 29483.0 29 28154.0 30 30434.0 31 36516.0 32 48882.0 33 76486.0 34 123004.0 35 84166.0 36 80716.0 37 113173.0 38 123874.0 39 27084.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.610351311103074 22.631178195097526 27.420688067066607 25.337782426732797 2 36.8620857080478 21.0439076422086 29.51260920427921 12.58139744546439 3 26.734424099835223 18.983486433849606 41.20158107918756 13.08050838712761 4 23.851203025731095 25.110874318542486 37.51163596509808 13.526286690628336 5 20.298228291932652 28.6617852638988 38.243194657612065 12.796791786556483 6 18.799266160278155 35.51464909622359 35.22941180943195 10.456672934066304 7 74.35992687671688 4.993933548184573 17.8486200315651 2.797519543533445 8 75.73354101562288 3.6154314892840502 17.553932766117374 3.0970947289756983 9 72.27962812704682 5.007076621947629 19.054415583992387 3.658879667013166 10 45.33469760611403 21.395294779592824 23.19089934469286 10.079108269600287 11 39.986444168548516 18.212933001823735 30.18692492263509 11.613697906992657 12 36.14073733730015 19.13164471990589 32.137965343561035 12.589652599232922 13 19.293380561502524 35.884284468254044 31.85859356076282 12.963741409480608 14 13.891794485774522 36.03168241120007 35.908289586449385 14.168233516576024 15 12.467997701591397 21.014471501797125 52.75010671958654 13.767424077024929 16 14.4150191660774 17.121188915935377 50.61799601797451 17.84579590001271 17 14.904354267751568 17.42532616003919 36.93507864663271 30.73524092557653 18 19.756212274761932 20.427378000232448 41.48768732953379 18.32872239547183 19 24.7711095687008 22.313680636342013 33.88523381093743 19.02997598401976 20 26.74821889626422 20.418253882909333 34.201536544805386 18.63199067602106 21 19.3928768885022 25.363959953814586 36.19363549368535 19.04952766399786 22 19.988877266501344 22.256654903072544 34.0071059494676 23.747361880958508 23 16.671826137772 26.943518455156596 33.92531475489254 22.459340652178874 24 17.085126928420213 21.15947979496805 45.481117965061145 16.27427531155059 25 15.590075132761338 22.568612819167598 42.176123705651634 19.665188342419434 26 14.630847988946783 30.123164721817613 35.95369293217631 19.292294357059298 27 15.307336116189116 29.75439831334174 36.98330612391203 17.954959446557112 28 13.879846236899015 24.889071371235353 44.803326392486944 16.42775599937869 29 14.752720127476953 21.0439076422086 43.661073799988486 20.54229843032596 30 17.07958728575975 26.758103356697593 38.29685315710753 17.865456200435133 31 25.1423742473961 23.7454067129607 32.92915666000823 18.183062379634972 32 26.034691197507815 23.19296313313499 33.599779283257135 17.17256638610006 33 24.4517654623918 24.694858016786203 31.74215244444879 19.111224076373208 34 18.205220950276818 24.69779076878292 34.32449488777879 22.772493393161476 35 19.05408972265942 24.05736462905575 35.833015618533686 21.05553002975114 36 27.218219558848926 23.569876074935074 30.371905539316803 18.8399988268992 37 18.786557568292388 29.61851413749393 33.23264218144611 18.362286112767574 38 20.510146778806412 29.435271447921384 29.3385992524741 20.7159825207981 39 20.257495625311606 28.43313922859933 31.33764990979072 19.971715236298344 40 22.9789808578191 24.871366238810737 29.816094725717086 22.33355817765308 41 17.667658371323334 22.91413445255839 31.927676163352114 27.490531012766162 42 21.515103129680863 23.630269041978543 28.389147948648596 26.465479879691994 43 20.88858040682701 25.496694136777037 29.035113731036226 24.579611725359722 44 19.649981480214244 28.32853774071648 30.30347465939344 21.718006119675834 45 16.99508058007662 34.15178838130555 27.032478599056958 21.82065243956087 46 20.931159621001548 29.58321249308902 29.246054633911083 20.239573251998344 47 20.14876656054449 25.89880702166 30.88720092718411 23.06522549061139 48 21.581687462050734 23.09857196701849 33.68363426627433 21.63610630465645 49 19.849843097768176 23.31277148322303 34.189479675485565 22.647905743523232 50 18.44168765756753 29.78046721997921 31.055997097661724 20.72184802479153 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 503.0 1 757.0 2 1011.0 3 13353.0 4 25695.0 5 18588.5 6 11482.0 7 11918.5 8 12355.0 9 13074.5 10 13794.0 11 13585.0 12 13376.0 13 12710.0 14 12044.0 15 11172.5 16 10301.0 17 9589.0 18 8877.0 19 8143.0 20 7409.0 21 6960.5 22 6512.0 23 6689.0 24 6866.0 25 6706.0 26 6546.0 27 7626.5 28 8707.0 29 9793.0 30 10879.0 31 12817.0 32 14755.0 33 17218.0 34 19681.0 35 22373.5 36 25066.0 37 25701.0 38 26336.0 39 32933.5 40 39531.0 41 53104.0 42 66677.0 43 76471.5 44 86266.0 45 87118.0 46 87970.0 47 81532.0 48 75094.0 49 73206.5 50 71319.0 51 68196.0 52 65073.0 53 56178.0 54 47283.0 55 41311.0 56 35339.0 57 30722.5 58 26106.0 59 23905.5 60 21705.0 61 19118.0 62 16531.0 63 14944.5 64 13358.0 65 11078.5 66 8799.0 67 7487.5 68 6176.0 69 5091.0 70 4006.0 71 3385.5 72 2765.0 73 2420.5 74 2076.0 75 1603.0 76 1130.0 77 879.0 78 628.0 79 472.5 80 317.0 81 244.0 82 171.0 83 113.0 84 55.0 85 44.0 86 33.0 87 22.5 88 12.0 89 9.0 90 6.0 91 9.0 92 12.0 93 7.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 920637.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.364677512383206 #Duplication Level Percentage of deduplicated Percentage of total 1 76.74755115064936 21.769195382533038 2 7.232428692724994 4.102910150009035 3 3.225400544598922 2.744623388874408 4 1.9908215719410038 2.2587604749120955 5 1.4617800266961136 2.0731459525639093 6 1.0974596327532977 1.867745313954348 7 0.849046624355652 1.685805358497795 8 0.6727135932896439 1.526504330548581 9 0.5647026666919628 1.4415848127990314 >10 4.93007907851293 30.65912083999217 >50 1.0161430646840213 19.92523003045391 >100 0.21110150117825957 7.987343915116707 >500 0.0 0.0 >1k 3.859259619346609E-4 0.15106398326427448 >5k 0.0 0.0 >10k+ 3.859259619346609E-4 1.8069660664807092 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16507 1.792997674436287 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1380 0.1498962131654496 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.048770579500932505 0.0 2 0.0 0.0 0.0 0.17107719980839353 0.0 3 0.0 0.0 0.0 0.23103568507457337 0.0 4 0.0 0.0 0.0 0.3522561009388065 0.0 5 0.0 0.0 0.0 0.6070796633200708 0.0 6 0.0 0.0 0.0 0.9031789945439951 0.0 7 0.0 0.0 0.0 1.1087974956470357 0.0 8 1.0862044432278955E-4 0.0 0.0 1.6404945706070906 0.0 9 2.172408886455791E-4 0.0 0.0 1.9199749738496281 0.0 10 2.172408886455791E-4 0.0 0.0 2.3913877022105345 0.0 11 2.172408886455791E-4 0.0 0.0 2.6646767401266733 0.0 12 2.172408886455791E-4 0.0 0.0 2.96164503490518 0.0 13 2.172408886455791E-4 0.0 0.0 3.0686361725631275 0.0 14 2.172408886455791E-4 0.0 0.0 3.1082826347409456 0.0 15 2.172408886455791E-4 0.0 0.0 3.160746309348853 0.0 16 2.172408886455791E-4 0.0 0.0 3.264044351899826 0.0 17 2.172408886455791E-4 0.0 0.0 3.4013405935238317 0.0 18 2.172408886455791E-4 0.0 0.0 3.6142366643964996 0.0 19 2.172408886455791E-4 0.0 0.0 3.690922698088389 0.0 20 2.172408886455791E-4 0.0 0.0 3.7908535068653553 0.0 21 2.172408886455791E-4 0.0 0.0 3.8949118925265878 0.0 22 2.172408886455791E-4 0.0 0.0 3.9969064897456867 0.0 23 2.172408886455791E-4 0.0 0.0 4.1054183136241535 0.0 24 2.172408886455791E-4 0.0 0.0 4.199918100184981 0.0 25 2.172408886455791E-4 0.0 0.0 4.270304148106148 0.0 26 2.172408886455791E-4 0.0 0.0 4.341776400470544 0.0 27 3.2586133296836863E-4 0.0 0.0 4.417267609274883 0.0 28 3.2586133296836863E-4 0.0 0.0 4.490912270525734 0.0 29 3.2586133296836863E-4 0.0 0.0 4.571725881101889 0.0 30 3.2586133296836863E-4 0.0 0.0 4.701961793844914 0.0 31 3.2586133296836863E-4 0.0 0.0 4.799720193735425 0.0 32 4.344817772911582E-4 0.0 0.0 4.884661381195846 0.0 33 4.344817772911582E-4 0.0 0.0 4.973187043318919 0.0 34 4.344817772911582E-4 0.0 0.0 5.066492004992195 0.0 35 4.344817772911582E-4 0.0 0.0 5.1807607124197705 0.0 36 4.344817772911582E-4 0.0 0.0 5.270807060763363 0.0 37 4.344817772911582E-4 0.0 0.0 5.367044774433355 0.0 38 4.344817772911582E-4 0.0 0.0 5.4696910943183905 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGTT 20 7.855663E-4 44.000004 15 AAGCGAC 30 2.5271656E-6 44.000004 15 GCGATAC 20 7.855663E-4 44.000004 9 TAATGCG 20 7.855663E-4 44.000004 1 TCACGAC 75 0.0 44.0 25 ACCGGGT 25 4.4421475E-5 44.0 4 GTTACAC 25 4.4421475E-5 44.0 33 CGTTTTT 12275 0.0 43.283096 1 TACGGGA 225 0.0 43.022224 4 ACGGTCT 80 0.0 41.250004 30 ATGGGAC 400 0.0 40.699997 5 ATTTGCG 120 0.0 40.333336 1 TACGTAG 60 3.6379788E-12 40.333336 1 ACGGGAC 160 0.0 39.875004 5 AGTACGG 50 1.3478711E-9 39.6 2 GTTTTTT 13735 0.0 39.51511 2 AAGGGAT 890 0.0 39.30337 5 GACACGA 90 0.0 39.111107 25 TTGTACG 45 2.3501343E-8 39.111107 1 CTCACGA 85 0.0 38.823532 24 >>END_MODULE