##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545962_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 795641 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.178479992861103 28.0 25.0 30.0 16.0 33.0 2 26.044406962436575 30.0 25.0 31.0 10.0 33.0 3 26.29342504973977 30.0 25.0 31.0 16.0 33.0 4 27.874225938582853 32.0 19.0 35.0 10.0 35.0 5 31.124694428768755 33.0 30.0 35.0 19.0 37.0 6 29.827897255169102 33.0 28.0 35.0 17.0 36.0 7 29.771224710642112 32.0 28.0 35.0 17.0 35.0 8 32.40502940396485 33.0 32.0 35.0 28.0 35.0 9 27.017830906149886 30.0 23.0 34.0 10.0 35.0 10 31.679281233621698 34.0 30.0 37.0 17.0 37.0 11 33.69933676117746 35.0 32.0 37.0 27.0 39.0 12 33.05154460365919 35.0 31.0 37.0 23.0 39.0 13 32.85084479055252 35.0 31.0 37.0 22.0 39.0 14 32.639779749912336 35.0 30.0 38.0 21.0 40.0 15 31.808466381194535 34.0 27.0 38.0 18.0 40.0 16 30.499233950990458 33.0 27.0 38.0 17.0 40.0 17 30.569543299050704 32.0 26.0 37.0 17.0 40.0 18 31.49484378004653 34.0 28.0 38.0 18.0 39.0 19 31.081429941393164 34.0 27.0 37.0 18.0 39.0 20 31.80316876581272 34.0 30.0 37.0 21.0 39.0 21 32.54548722350909 34.0 31.0 37.0 23.0 39.0 22 32.90676825352138 34.0 31.0 37.0 25.0 39.0 23 34.22026894038894 35.0 33.0 38.0 28.0 40.0 24 33.860096450534854 35.0 33.0 38.0 27.0 40.0 25 32.61179979412826 35.0 31.0 37.0 23.0 39.0 26 26.24880567994862 33.0 20.0 36.0 0.0 39.0 27 29.486738365669943 33.0 23.0 37.0 12.0 39.0 28 31.01723013268547 34.0 27.0 36.0 18.0 39.0 29 32.356075164552855 34.0 30.0 37.0 23.0 39.0 30 32.10517557541655 34.0 30.0 37.0 22.0 39.0 31 31.014603319838972 33.0 29.0 36.0 19.0 38.0 32 31.204299426500143 34.0 30.0 37.0 18.0 39.0 33 30.943464451932467 34.0 29.0 37.0 18.0 39.0 34 30.92274153795493 34.0 29.0 37.0 15.0 39.0 35 30.095615987612504 34.0 27.0 37.0 10.0 39.0 36 29.730746655841013 33.0 26.0 37.0 10.0 39.0 37 29.718209594528187 33.0 26.0 37.0 10.0 39.0 38 29.504723864154812 33.0 26.0 36.0 10.0 38.0 39 29.351399689055743 33.0 26.0 36.0 10.0 39.0 40 29.297291114962654 33.0 26.0 36.0 10.0 38.0 41 28.74709322420539 33.0 24.0 36.0 9.0 38.0 42 28.951034448953738 33.0 24.0 36.0 9.0 38.0 43 28.505040589914294 33.0 24.0 35.0 8.0 38.0 44 28.202925691360804 32.0 23.0 35.0 8.0 38.0 45 27.69782100218566 31.0 23.0 35.0 8.0 38.0 46 27.31206285246738 31.0 23.0 35.0 8.0 38.0 47 27.472269528593927 31.0 23.0 34.0 8.0 38.0 48 27.553758541854933 31.0 23.0 34.0 8.0 37.0 49 27.42925766771697 31.0 23.0 34.0 8.0 37.0 50 29.17081824591744 33.0 25.0 36.0 9.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 16.0 12 35.0 13 107.0 14 290.0 15 620.0 16 1263.0 17 2391.0 18 3902.0 19 6084.0 20 8907.0 21 12446.0 22 16636.0 23 21801.0 24 28294.0 25 35207.0 26 41143.0 27 45515.0 28 49909.0 29 57695.0 30 68523.0 31 79202.0 32 85053.0 33 81727.0 34 67761.0 35 50671.0 36 25317.0 37 4975.0 38 147.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.797844756617618 23.417219575160154 27.28780945175022 26.497126216472 2 36.717816201025336 18.305617734631575 31.429627181103037 13.546938883240053 3 27.986994134289205 14.640522547229216 43.074954659199314 14.297528659282262 4 25.13935304993081 24.750609885614242 36.721586745781075 13.388450318673875 5 19.691544302015608 28.765360256698685 39.135615183229625 12.407480258056083 6 18.767509467209457 34.139894751527386 36.406243519376204 10.686352261886958 7 77.34443046549889 3.2890461904301063 17.568978974185594 1.7975443698854132 8 79.353376711356 1.9786562029860202 16.85772854842825 1.8102385372297307 9 67.19613494025572 2.916139314087635 17.07893384076487 12.808791904891779 10 46.97922806894064 21.074831488070625 23.003465130630524 8.942475312358212 11 41.52262138326205 17.40609144073772 30.3039938866901 10.767293289310128 12 37.202959626263606 18.949626778911593 32.366481868078694 11.480931726746107 13 18.761979334901042 37.002618014908734 31.91401649739015 12.32138615280007 14 13.106287886119494 36.4392986284015 36.687274788503856 13.767138696975142 15 11.031231422211777 19.377332239037457 53.363137394880354 16.228298943870413 16 12.715785134250247 15.13433822540568 50.91354015190268 21.236336488441395 17 14.072552822189907 16.38050326717703 37.69501571688739 31.85192819374567 18 19.345156923788494 19.82954624007561 42.68118410187509 18.144112734260805 19 25.643097829297385 21.26285598655675 34.59072621948844 18.50331996465743 20 27.546971561294605 19.875923940571187 34.72143843768735 17.855666060446858 21 19.149842705441273 25.043329843484685 36.86247943482048 18.944348016253564 22 19.60909505669014 21.92584343944065 34.144042350758696 24.32101915311051 23 16.022175830556744 26.680877430901624 34.718799056358336 22.578147682183296 24 16.13893703315943 20.32047116727268 47.88089100486275 15.65970079470515 25 14.853558325928404 21.365791858388395 44.178970163679345 19.601679652003856 26 11.435810874502446 41.878309438553316 29.993803738118068 16.692075948826165 27 14.2682440950127 30.84003966613083 37.74189615668373 17.149820082172738 28 13.082659138983537 24.738921196871452 46.433881612435755 15.74453805170925 29 13.855997868385364 20.66748696962575 45.125502582194734 20.351012579794155 30 16.609375333850316 26.793742403923375 39.07666900021492 17.52021326201138 31 25.95806400122668 23.312901170251408 33.60309486313551 17.1259399653864 32 26.62821548914649 22.247847961580664 34.29863468574395 16.825301863528903 33 24.84122864457714 24.041873156360722 32.14150603098634 18.975392168075803 34 17.725833636024287 23.922346887603833 34.897271508129926 23.45454796824196 35 18.757328996368965 23.238872808213753 36.37620484615549 21.62759334926179 36 27.472817514431757 23.185079703031892 30.344213030751305 18.99788975178504 37 17.941508796052492 30.363945548306333 32.91094853080724 18.78359712483394 38 19.491077005835546 30.440738976498196 29.25892456522477 20.809259452441488 39 19.6758336988667 28.87772249041967 31.10724560448745 20.339198206226175 40 22.893867963063744 24.31410648772499 29.686378655700246 23.105646893511018 41 17.019861972924975 22.152453179260494 31.880584333889278 28.94710051392525 42 20.75144443285351 22.742543433533466 27.62954649144526 28.87646564216776 43 20.250464719641144 24.57905009922817 29.181502712906955 25.988982468223732 44 18.67701639307175 27.652546814455263 30.73220208611673 22.93823470635626 45 16.076723044689754 35.447519672817265 26.300052410572107 22.17570487192088 46 19.803780850911405 29.57238251925177 28.877471120769293 21.74636550906753 47 19.386004491975655 25.18723896832868 30.443504042652403 24.983252497043264 48 20.71838932382821 22.496075491333404 34.597136145573195 22.188399039265196 49 19.375069912184014 23.186462236108998 33.98756474339557 23.45090310831141 50 17.870873924295 30.627129572256834 30.763120553113776 20.738875950334386 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 297.0 1 453.0 2 609.0 3 7699.0 4 14789.0 5 12007.0 6 9225.0 7 9466.0 8 9707.0 9 10597.5 10 11488.0 11 11888.0 12 12288.0 13 12166.5 14 12045.0 15 11743.0 16 11441.0 17 10809.5 18 10178.0 19 9481.5 20 8785.0 21 8293.0 22 7801.0 23 7749.0 24 7697.0 25 7274.5 26 6852.0 27 7713.0 28 8574.0 29 9620.0 30 10666.0 31 12127.0 32 13588.0 33 15590.0 34 17592.0 35 19318.0 36 21044.0 37 21499.5 38 21955.0 39 27187.5 40 32420.0 41 43939.0 42 55458.0 43 64069.0 44 72680.0 45 73851.5 46 75023.0 47 69640.5 48 64258.0 49 61593.0 50 58928.0 51 56227.5 52 53527.0 53 47496.0 54 41465.0 55 36228.5 56 30992.0 57 27468.0 58 23944.0 59 21581.5 60 19219.0 61 16971.0 62 14723.0 63 13372.0 64 12021.0 65 10031.0 66 8041.0 67 6861.0 68 5681.0 69 4742.5 70 3804.0 71 3261.0 72 2718.0 73 2277.5 74 1837.0 75 1474.0 76 1111.0 77 857.0 78 603.0 79 454.5 80 306.0 81 225.0 82 144.0 83 103.5 84 63.0 85 42.0 86 21.0 87 16.5 88 12.0 89 10.0 90 8.0 91 9.0 92 10.0 93 6.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 795641.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.49885373825258 #Duplication Level Percentage of deduplicated Percentage of total 1 82.20478421208936 35.758138850262895 2 7.059495584290731 6.141599317738048 3 2.7177124823667875 3.546521333192887 4 1.4896282488978192 2.5918848529270218 5 1.0009663146191448 2.1770443658267946 6 0.7451983898441517 1.9449165459487248 7 0.5331002347442106 1.6232474397276573 8 0.42197783862920935 1.4684441826652739 9 0.32193107438796437 1.2603269446740517 >10 3.0783094793601378 28.528596958187286 >50 0.3815086740764798 11.009983342653024 >100 0.04475267694998865 2.690298173350913 >500 3.173948719857153E-4 0.07980048979763701 >1k 0.0 0.0 >5k 3.173948719857153E-4 1.1791972030477815 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8541 1.073474091958559 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2568482519126087E-4 0.0 0.0 0.034940381403170524 0.0 2 1.2568482519126087E-4 0.0 0.0 0.1413954283401685 0.0 3 1.2568482519126087E-4 0.0 0.0 0.18613922610825737 0.0 4 1.2568482519126087E-4 0.0 0.0 0.27198196171388855 0.0 5 1.2568482519126087E-4 0.0 0.0 0.4479407169816538 0.0 6 1.2568482519126087E-4 0.0 0.0 0.6203802971440637 0.0 7 1.2568482519126087E-4 0.0 0.0 0.745311013384177 0.0 8 1.2568482519126087E-4 0.0 0.0 1.074856625035663 0.0 9 1.2568482519126087E-4 0.0 0.0 1.294050960169222 0.0 10 1.2568482519126087E-4 0.0 0.0 1.6047438480420189 0.0 11 1.2568482519126087E-4 0.0 0.0 1.7976700547106044 0.0 12 1.2568482519126087E-4 0.0 0.0 1.9975089267647093 0.0 13 1.2568482519126087E-4 0.0 0.0 2.070657495026023 0.0 14 1.2568482519126087E-4 0.0 0.0 2.093783502861215 0.0 15 1.2568482519126087E-4 0.0 0.0 2.126084502935369 0.0 16 1.2568482519126087E-4 0.0 0.0 2.1867902735027482 0.0 17 1.2568482519126087E-4 0.0 0.0 2.287463818480948 0.0 18 1.2568482519126087E-4 0.0 0.0 2.427728083394395 0.0 19 1.2568482519126087E-4 0.0 0.0 2.476242425918222 0.0 20 1.2568482519126087E-4 0.0 0.0 2.5383307295627047 0.0 21 1.2568482519126087E-4 0.0 0.0 2.5974025974025974 0.0 22 1.2568482519126087E-4 0.0 0.0 2.661753227900523 0.0 23 1.2568482519126087E-4 0.0 0.0 2.725852488748066 0.0 24 1.2568482519126087E-4 0.0 0.0 2.775623679523805 0.0 25 1.2568482519126087E-4 0.0 0.0 2.812575018130036 0.0 26 1.2568482519126087E-4 0.0 0.0 2.8571931310729335 0.0 27 1.2568482519126087E-4 0.0 0.0 2.9158879444372525 0.0 28 1.2568482519126087E-4 0.0 0.0 2.9713149523465985 0.0 29 1.2568482519126087E-4 0.0 0.0 3.0362940069704805 0.0 30 1.2568482519126087E-4 0.0 0.0 3.13495659474562 0.0 31 1.2568482519126087E-4 0.0 0.0 3.2025750306985183 0.0 32 1.2568482519126087E-4 0.0 0.0 3.267302715672018 0.0 33 1.2568482519126087E-4 0.0 0.0 3.3359266302264463 0.0 34 1.2568482519126087E-4 0.0 0.0 3.4029166420533885 0.0 35 1.2568482519126087E-4 0.0 0.0 3.488130953533063 0.0 36 1.2568482519126087E-4 0.0 0.0 3.5636675334730112 0.0 37 1.2568482519126087E-4 0.0 0.0 3.6286465880968928 0.0 38 1.2568482519126087E-4 0.0 0.0 3.708205082442961 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 30 2.526729E-6 44.000004 1 TGACGAT 30 2.526729E-6 44.000004 19 GCGATAA 30 2.526729E-6 44.000004 9 GCAACCG 25 4.4416003E-5 44.0 12 CGACACG 25 4.4416003E-5 44.0 24 ATGTACG 20 7.855019E-4 44.0 1 ACGATGT 20 7.855019E-4 44.0 36 ATATCCG 25 4.4416003E-5 44.0 1 TACGATA 25 4.4416003E-5 44.0 44 CCGAACT 25 4.4416003E-5 44.0 12 CCTATAG 25 4.4416003E-5 44.0 1 TCGACGG 50 2.7284841E-11 44.0 2 TCGAAAT 20 7.855019E-4 44.0 32 ACGTTAG 45 4.802132E-10 43.999996 1 ACGATTG 85 0.0 43.999996 1 CGTTTTT 10835 0.0 43.39086 1 TACGGGA 210 0.0 41.904762 4 GCGGAAT 445 0.0 41.52809 8 CGGGAAT 1410 0.0 41.19149 9 GTTAGCG 70 0.0 40.857143 1 >>END_MODULE