##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545961_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 494817 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.19377871010899 31.0 28.0 33.0 25.0 33.0 2 28.89404769844205 31.0 28.0 33.0 16.0 33.0 3 28.32609429344586 31.0 28.0 33.0 16.0 34.0 4 32.157359185314974 35.0 32.0 35.0 25.0 37.0 5 33.656830707109904 35.0 33.0 35.0 28.0 37.0 6 33.49641180476823 35.0 33.0 37.0 28.0 37.0 7 34.323172000961975 35.0 35.0 37.0 31.0 37.0 8 34.78798626562951 35.0 35.0 37.0 32.0 37.0 9 36.594324770571745 39.0 37.0 39.0 32.0 39.0 10 36.36916678287125 39.0 35.0 39.0 32.0 39.0 11 36.33385878011467 38.0 35.0 39.0 32.0 39.0 12 35.04234292677899 37.0 34.0 39.0 29.0 39.0 13 35.01525008235368 37.0 34.0 39.0 27.0 39.0 14 35.7494184718795 38.0 33.0 40.0 27.0 41.0 15 36.403943275999005 38.0 35.0 40.0 31.0 41.0 16 36.06638817987256 37.0 34.0 40.0 31.0 41.0 17 35.651242782685316 37.0 34.0 40.0 29.0 41.0 18 35.312388216249644 37.0 33.0 39.0 29.0 40.0 19 34.72168296562163 36.0 33.0 39.0 27.0 40.0 20 35.10049169693038 35.0 34.0 39.0 29.0 40.0 21 35.249154738014255 35.0 34.0 39.0 30.0 40.0 22 35.59813223878727 35.0 34.0 39.0 31.0 40.0 23 35.93435350846879 36.0 35.0 40.0 31.0 41.0 24 35.59390441314668 35.0 34.0 40.0 31.0 41.0 25 35.25346946446868 35.0 34.0 39.0 30.0 41.0 26 35.343516896145445 35.0 34.0 40.0 30.0 41.0 27 35.61933199546499 35.0 34.0 40.0 31.0 41.0 28 35.5424308380674 36.0 35.0 40.0 31.0 41.0 29 35.68747435920755 36.0 35.0 40.0 31.0 41.0 30 35.32502925323907 36.0 34.0 40.0 30.0 41.0 31 34.60284307127686 35.0 34.0 39.0 27.0 41.0 32 34.45499043080573 35.0 34.0 39.0 25.0 41.0 33 34.08451003098115 35.0 33.0 40.0 23.0 41.0 34 33.64870447054164 35.0 33.0 40.0 21.0 41.0 35 33.32674503907505 35.0 33.0 40.0 18.0 41.0 36 32.87428685756552 35.0 33.0 40.0 15.0 41.0 37 32.76595387789829 35.0 33.0 40.0 15.0 41.0 38 32.58542451047559 35.0 32.0 39.0 15.0 40.0 39 32.42457312501389 35.0 32.0 39.0 13.0 40.0 40 32.243126246673015 35.0 31.0 39.0 12.0 40.0 41 31.946244773320238 35.0 31.0 39.0 10.0 40.0 42 32.076755649058136 35.0 31.0 39.0 10.0 40.0 43 31.84622597849306 35.0 31.0 39.0 10.0 40.0 44 31.653724508252544 35.0 31.0 38.0 10.0 40.0 45 31.581362402666038 35.0 31.0 38.0 10.0 40.0 46 31.426418251596044 35.0 30.0 38.0 10.0 40.0 47 31.36929410266826 35.0 30.0 38.0 10.0 40.0 48 31.40333497030215 35.0 31.0 38.0 10.0 40.0 49 31.40625524183688 35.0 31.0 38.0 10.0 40.0 50 31.50903263226607 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 2.0 13 5.0 14 20.0 15 57.0 16 157.0 17 324.0 18 623.0 19 1084.0 20 1700.0 21 2549.0 22 3597.0 23 5126.0 24 7326.0 25 10851.0 26 15095.0 27 17258.0 28 16455.0 29 15465.0 30 16642.0 31 19950.0 32 26680.0 33 40756.0 34 65840.0 35 45821.0 36 44424.0 37 60095.0 38 63755.0 39 13155.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.74628600068308 22.4531493461219 27.16822582894282 24.632338824252198 2 39.17993925026828 19.595123045489547 28.8668335970672 12.358104107174976 3 27.39901822289857 18.30636376680672 41.80838572644028 12.486232283854436 4 24.481171827160345 24.471067081365433 37.76871045255115 13.279050638923076 5 20.014065806146515 28.845815725813782 38.39338583759249 12.746732630447216 6 18.460966377468843 35.375300363568755 36.16367263048764 10.000060628474769 7 75.1316143139787 4.549358651784397 18.07051899995352 2.2485080342833816 8 76.35307598566743 3.2183615356788473 17.633993981613404 2.79456849704032 9 73.05084505989082 4.601297045170235 18.742484595315034 3.6053732996239014 10 46.676852250427935 20.330950634274895 23.102076121071022 9.890120994226148 11 40.095025029455336 18.8475739515821 29.490700602444946 11.566700416517621 12 35.711788398539255 18.9936885757765 32.238180984080984 13.056342041603259 13 19.549045404664756 33.33333333333333 33.42447814040342 13.693143121598489 14 14.870346006705509 34.44465327585754 36.5157219739823 14.16927874345465 15 13.888973095103847 19.724665886580294 52.29226158357534 14.09409943474052 16 15.905274071020195 16.436379510000666 50.248475699096836 17.4098707198823 17 16.855726460489436 17.16472958689778 36.28634424443784 29.693199708174937 18 21.326874379821227 19.793782347817476 40.72071088907616 18.158632383285134 19 26.23050541917517 21.72055527599092 33.67467164628539 18.37426765854851 20 27.53118829789599 21.482891654894637 33.06535547485232 17.920564572357055 21 21.096890365529074 24.6658865802913 36.17539413560973 18.061828918569894 22 20.832752310450125 21.13185278597946 34.42868777750158 23.60670712606883 23 18.39629600438142 25.84409993997781 33.71751576845581 22.04208828718496 24 18.530082838706026 21.392959417319936 43.544381054005825 16.53257668996821 25 17.099250834146765 21.769866435470085 41.298500253629115 19.83238247675403 26 15.96327531188298 29.04447502814172 35.05114011846804 19.941109541507267 27 17.219497309106195 27.972361499301762 36.82573557497014 17.982405616621904 28 15.345269059066279 24.198238944902865 43.83782287189001 16.618669124140844 29 16.531768310304617 21.19268335566482 42.715791898823205 19.55975643520736 30 19.01511063686171 25.520748074540688 38.021127002507995 17.443014286089607 31 26.447151169018042 22.604316343213753 32.99583482378334 17.952697663984868 32 27.887885824456315 22.80358193028938 32.4827158323178 16.8258164129365 33 26.46048943346732 23.528698488532125 31.621791490591473 18.38902058740908 34 19.06846369465883 24.556553230790374 33.826040738293145 22.548942336257646 35 19.41606695000374 24.53452488495747 35.41915496031866 20.630253204720127 36 28.064112591119546 23.001837042785514 30.572110497416215 18.36193986867872 37 19.94616191440472 29.39551389705689 32.36994686924661 18.28837731929178 38 20.215958627128817 29.561433823009313 28.863600078412826 21.35900747144904 39 20.203630837259027 28.698488532123996 30.14043575705766 20.957444873559318 40 23.35813037951404 24.36011697253732 29.230806540599858 23.05094610734878 41 18.568682967642584 22.719106255443933 30.68871926388948 28.023491513024005 42 21.94649739196511 23.99634612392056 28.026927126594277 26.030229357520053 43 21.852725350988344 24.373253142070705 28.939183576958754 24.834837929982196 44 20.11026298611406 27.49339654862303 30.559984802462324 21.836355662800592 45 18.053745121933968 32.3034576419161 27.1482184322689 22.49457880388103 46 21.569994563646762 28.449709690653314 29.325184866324317 20.655110879375606 47 20.810319774785427 24.644666614121988 30.77723683705289 23.767776774039696 48 22.202349555492233 22.8686564932086 32.90428582688145 22.024708124417714 49 20.748680825436473 22.4644666614122 33.735300121054856 23.051552392096472 50 19.541365797860625 28.090384930186314 30.866360694963994 21.50188857698907 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 256.0 1 445.5 2 635.0 3 7801.0 4 14967.0 5 10546.0 6 6125.0 7 6379.0 8 6633.0 9 7016.0 10 7399.0 11 7360.5 12 7322.0 13 7056.5 14 6791.0 15 6412.0 16 6033.0 17 5522.0 18 5011.0 19 4702.5 20 4394.0 21 4123.5 22 3853.0 23 3594.0 24 3335.0 25 3424.0 26 3513.0 27 3664.0 28 3815.0 29 4403.5 30 4992.0 31 5654.5 32 6317.0 33 7364.0 34 8411.0 35 9238.5 36 10066.0 37 10991.5 38 11917.0 39 15677.5 40 19438.0 41 26452.0 42 33466.0 43 39349.0 44 45232.0 45 46549.5 46 47867.0 47 43556.0 48 39245.0 49 36997.0 50 34749.0 51 31402.5 52 28056.0 53 26040.5 54 24025.0 55 22049.0 56 20073.0 57 19040.5 58 18008.0 59 16929.5 60 15851.0 61 14270.0 62 12689.0 63 11696.0 64 10703.0 65 9052.5 66 7402.0 67 6438.0 68 5474.0 69 4591.0 70 3708.0 71 3256.5 72 2805.0 73 2373.0 74 1941.0 75 1500.5 76 1060.0 77 826.0 78 592.0 79 443.0 80 294.0 81 243.5 82 193.0 83 137.0 84 81.0 85 53.5 86 26.0 87 33.0 88 40.0 89 24.0 90 8.0 91 6.5 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 494817.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.25700389759305 #Duplication Level Percentage of deduplicated Percentage of total 1 75.80282670096085 26.725805564443473 2 8.030492072699513 5.662621806135137 3 3.7117996063975713 3.926007995695306 4 2.228326872505073 3.1425651691609082 5 1.456434878324591 2.5674765090840284 6 1.1006059864536808 2.3282441732467003 7 0.8176404126607426 2.017928585120657 8 0.6541227065056446 1.8449925450218903 9 0.5280100770933038 1.6754448011442318 >10 5.283350395529306 38.75327158881392 >50 0.3605543873197711 8.062649015348757 >100 0.025261772359983947 1.31290556384605 >500 0.0 0.0 >1k 0.0 0.0 >5k 5.741311899996351E-4 1.980086682938955 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9782 1.9768924673161998 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04385459674990956 0.0 2 0.0 0.0 0.0 0.17056810901808142 0.0 3 0.0 0.0 0.0 0.22493164139469743 0.0 4 0.0 0.0 0.0 0.3498262994197855 0.0 5 0.0 0.0 0.0 0.6347801308362485 0.0 6 0.0 0.0 0.0 0.9183192978414242 0.0 7 0.0 0.0 0.0 1.1139471764308826 0.0 8 0.0 0.0 0.0 1.7099250834146766 0.0 9 0.0 0.0 0.0 2.007408799616828 0.0 10 0.0 0.0 0.0 2.4849590858842765 0.0 11 0.0 0.0 0.0 2.7915370733018467 0.0 12 0.0 0.0 0.0 3.112665894664088 0.0 13 0.0 0.0 0.0 3.24382549508202 0.0 14 0.0 0.0 0.0 3.290307325738606 0.0 15 0.0 0.0 0.0 3.348106471685492 0.0 16 4.041898317964015E-4 0.0 0.0 3.4592586754295023 0.0 17 4.041898317964015E-4 0.0 0.0 3.591832940258722 0.0 18 4.041898317964015E-4 0.0 0.0 3.801203273129258 0.0 19 4.041898317964015E-4 0.0 0.0 3.8986130225921904 0.0 20 4.041898317964015E-4 0.0 0.0 4.0071379924295245 0.0 21 4.041898317964015E-4 0.0 0.0 4.127182372473055 0.0 22 4.041898317964015E-4 0.0 0.0 4.247024657600689 0.0 23 4.041898317964015E-4 0.0 0.0 4.372121410541675 0.0 24 4.041898317964015E-4 0.0 0.0 4.473977248154368 0.0 25 6.062847476946022E-4 0.0 0.0 4.552996360270565 0.0 26 6.062847476946022E-4 0.0 0.0 4.637472035116013 0.0 27 6.062847476946022E-4 0.0 0.0 4.729425221849694 0.0 28 6.062847476946022E-4 0.0 0.0 4.8139008966951415 0.0 29 8.08379663592803E-4 0.0 0.0 4.9179797783827155 0.0 30 8.08379663592803E-4 0.0 0.0 5.063892307661217 0.0 31 8.08379663592803E-4 0.0 0.0 5.177671745311903 0.0 32 8.08379663592803E-4 0.0 0.0 5.273262640531752 0.0 33 8.08379663592803E-4 0.0 0.0 5.373097528985463 0.0 34 8.08379663592803E-4 0.0 0.0 5.480005739495612 0.0 35 8.08379663592803E-4 0.0 0.0 5.609144390754562 0.0 36 8.08379663592803E-4 0.0 0.0 5.717467265675998 0.0 37 8.08379663592803E-4 0.0 0.0 5.832459272822073 0.0 38 8.08379663592803E-4 0.0 0.0 5.962406303744617 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 20 7.852132E-4 44.0 1 ACTGCGC 20 7.852132E-4 44.0 34 CTCGTAG 25 4.439153E-5 44.0 1 ATAGGTT 20 7.852132E-4 44.0 15 ACGCATG 25 4.439153E-5 44.0 1 CCGGATA 30 2.5247828E-6 44.0 20 TCGATAG 20 7.852132E-4 44.0 1 ATCGTAA 20 7.852132E-4 44.0 14 GTATGCG 20 7.852132E-4 44.0 1 AGACCGT 20 7.852132E-4 44.0 14 CGGGCAC 35 1.443841E-7 44.0 6 CGTAAAT 20 7.852132E-4 44.0 16 CGGTCTA 55 1.8189894E-12 44.0 31 ATACGAG 35 1.443841E-7 44.0 1 TCGACGG 55 1.8189894E-12 44.0 2 ACCTTCG 20 7.852132E-4 44.0 33 TGCGTAG 45 4.783942E-10 44.0 1 CGTTTTT 7060 0.0 43.22096 1 CGTATGG 85 0.0 41.411766 2 AACGGGA 80 0.0 41.25 4 >>END_MODULE