##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545959_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 489535 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.054153431317474 31.0 28.0 33.0 25.0 33.0 2 28.762535875882214 31.0 28.0 33.0 16.0 33.0 3 28.201801709785816 31.0 27.0 33.0 16.0 34.0 4 32.05101371709888 35.0 32.0 35.0 25.0 37.0 5 33.643042887638266 35.0 33.0 35.0 28.0 37.0 6 33.52330681156608 35.0 33.0 37.0 28.0 37.0 7 34.30620691063969 35.0 35.0 37.0 31.0 37.0 8 34.78156822290541 35.0 35.0 37.0 32.0 37.0 9 36.67021357002053 39.0 37.0 39.0 32.0 39.0 10 36.44161704474654 39.0 35.0 39.0 32.0 39.0 11 36.38437496808196 39.0 35.0 39.0 32.0 39.0 12 35.149194643896756 37.0 34.0 39.0 30.0 39.0 13 35.08514406528644 37.0 34.0 39.0 27.0 39.0 14 35.8134290704444 38.0 34.0 40.0 27.0 41.0 15 36.403006935152746 38.0 35.0 40.0 31.0 41.0 16 36.05176953639678 37.0 34.0 40.0 31.0 41.0 17 35.6418397050262 37.0 34.0 40.0 30.0 41.0 18 35.30513446433861 37.0 33.0 39.0 29.0 40.0 19 34.67426231015147 36.0 33.0 39.0 27.0 40.0 20 35.13980818531872 35.0 34.0 39.0 30.0 40.0 21 35.20838142318731 35.0 34.0 39.0 30.0 40.0 22 35.57161592123137 35.0 34.0 39.0 31.0 40.0 23 35.9190599242138 36.0 35.0 40.0 31.0 41.0 24 35.4788074397132 35.0 34.0 40.0 31.0 41.0 25 35.15903050854382 35.0 34.0 39.0 30.0 41.0 26 35.28677009815437 35.0 34.0 39.0 30.0 41.0 27 35.62601856864167 35.0 34.0 40.0 31.0 41.0 28 35.55039782650883 36.0 35.0 40.0 31.0 41.0 29 35.679718508380404 36.0 35.0 40.0 31.0 41.0 30 35.340047187637246 36.0 34.0 40.0 30.0 41.0 31 34.597781568222906 35.0 34.0 39.0 27.0 41.0 32 34.500193040334196 35.0 34.0 40.0 26.0 41.0 33 34.16952005474583 35.0 33.0 40.0 23.0 41.0 34 33.67750007660331 35.0 33.0 40.0 21.0 41.0 35 33.339779586750694 35.0 33.0 40.0 18.0 41.0 36 32.913342253362885 35.0 33.0 40.0 15.0 41.0 37 32.80478617463511 35.0 33.0 40.0 15.0 41.0 38 32.626860183643664 35.0 32.0 40.0 15.0 41.0 39 32.39767943047995 35.0 32.0 39.0 13.0 40.0 40 32.24077542974455 35.0 31.0 39.0 12.0 40.0 41 31.924620302940546 35.0 31.0 39.0 10.0 40.0 42 32.097584442378995 35.0 31.0 39.0 10.0 40.0 43 31.88148753408847 35.0 31.0 39.0 10.0 40.0 44 31.69844444217472 35.0 31.0 39.0 10.0 40.0 45 31.629824220944364 35.0 31.0 38.0 10.0 40.0 46 31.45985476012951 35.0 30.0 38.0 10.0 40.0 47 31.42714821207881 35.0 31.0 38.0 10.0 40.0 48 31.441631344030558 35.0 31.0 38.0 10.0 40.0 49 31.514149141532272 35.0 31.0 38.0 10.0 40.0 50 31.56136742010275 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 8.0 13 6.0 14 22.0 15 55.0 16 145.0 17 354.0 18 625.0 19 1090.0 20 1642.0 21 2522.0 22 3482.0 23 4925.0 24 7190.0 25 10762.0 26 15106.0 27 17126.0 28 16193.0 29 15573.0 30 16658.0 31 19875.0 32 25873.0 33 40107.0 34 65037.0 35 45321.0 36 43697.0 37 59417.0 38 63236.0 39 13484.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.72482049291675 22.44129633223365 27.06813608832872 24.765747086520882 2 39.369605850449915 19.342437210822517 28.87352283289244 12.414434105835129 3 27.248102791424518 18.301040783600765 41.86278815610733 12.588068268867394 4 24.58046922079116 24.525110564106754 37.59588180620385 13.298538408898239 5 19.924009519237643 29.022439662128345 38.29021418284699 12.763336635787024 6 18.35680799125701 35.36764480578508 36.27728354458823 9.998263658369677 7 74.89147864810484 4.650127161489985 18.158047943456545 2.3003462469486347 8 76.12959236826785 3.3072201170498534 17.720898403587075 2.842289111095223 9 72.89938410940995 4.67280174042714 18.85503590141665 3.572778248746259 10 46.73863972953926 20.32561512455698 23.090892377460243 9.844852768443522 11 40.1981472213427 18.562104854606922 29.617289877128293 11.62245804692208 12 35.67896064632764 19.0325512986814 32.33047688112188 12.95801117386908 13 19.55508799166556 33.379022950350844 33.384742663956615 13.681146394026985 14 14.886371760956827 34.44922222108736 36.499330997783616 14.165075020172205 15 13.924642773243997 19.733420490873993 52.31536049516377 14.026576240718233 16 15.795193397816295 16.413739569183 50.418458332907754 17.372608700092947 17 16.771834496001308 17.08846149917779 36.352661198892825 29.787042805928078 18 21.28938686712901 19.762631885360598 40.72660790341855 18.221373344091845 19 26.300673087726107 21.645234763602193 33.712196267886874 18.341895880784826 20 27.64235447925072 21.292246723931896 33.07812515959022 17.98727363722716 21 21.258745544240966 24.52286353376163 36.188832259184736 18.02955866281267 22 20.97582399624133 21.029752724524293 34.493550001532064 23.500873277702308 23 18.552912457740508 25.741366807276293 33.76387796582471 21.941842769158487 24 18.48917850613337 21.36047473622928 43.61567610078952 16.534670656847826 25 17.083967438487544 21.77454114618975 41.3898904062018 19.7516010091209 26 15.912856077706394 29.093936082200457 35.04529808900283 19.94790975109032 27 17.428988734206953 27.87808839000276 36.7285280929862 17.96439478280409 28 15.359065235376429 24.10369023665315 43.893490761641154 16.643753766329272 29 16.414556671126682 21.241790678909577 42.855362742194124 19.48828990776962 30 19.114057217563605 25.475604400093964 38.027311632467544 17.38302674987488 31 26.534364243618946 22.575505326483295 32.95310856220699 17.937021867690767 32 27.833556334072128 22.619833106928002 32.61339842912152 16.933212129878353 33 26.436107734891273 23.508227195195442 31.69252453859275 18.36314053132054 34 19.079330384957153 24.537162817776053 33.7667378226276 22.616768974639196 35 19.41822341609895 24.556773264424404 35.546385855965354 20.47861746351129 36 28.18674864922835 23.015106172183806 30.53040129919209 18.267743879395752 37 19.938104527766146 29.302297077839174 32.46366449794193 18.295933896452755 38 20.044327780444707 29.624643794621424 29.007527551656164 21.323500873277702 39 20.23675528818164 28.665161837253724 30.154125854126875 20.94395702043776 40 23.29843627115528 24.48159988560573 29.37624480374233 22.843719039496666 41 18.516959972218533 22.772018343938637 30.764501006056765 27.94652067778606 42 21.96880713329997 24.00645510535508 27.95121901396223 26.073518747382717 43 21.828878425444554 24.297139121819686 29.072282880692903 24.801699572042857 44 19.96649882030907 27.541238113720162 30.82292379502998 21.66933927094079 45 18.111268857180793 32.35294718457312 27.177014922324243 22.358769035921846 46 21.64400911068667 28.64595994157721 29.286567865423308 20.423463082312807 47 20.90371474971146 24.661158037729685 30.781455871388154 23.653671341170703 48 22.253362885186963 22.888251095427293 32.837897188147934 22.02048883123781 49 20.703524773509553 22.468464971861053 33.73773070362691 23.09027955100248 50 19.511168762192693 28.163665519319352 30.946101913039925 21.379063805448027 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 251.0 1 413.0 2 575.0 3 7918.5 4 15262.0 5 10725.5 6 6189.0 7 6411.0 8 6633.0 9 7036.5 10 7440.0 11 7338.0 12 7236.0 13 6872.0 14 6508.0 15 6302.0 16 6096.0 17 5531.0 18 4966.0 19 4577.0 20 4188.0 21 4039.5 22 3891.0 23 3563.0 24 3235.0 25 3256.0 26 3277.0 27 3478.5 28 3680.0 29 4281.0 30 4882.0 31 5513.0 32 6144.0 33 7245.5 34 8347.0 35 9183.5 36 10020.0 37 10913.0 38 11806.0 39 15575.0 40 19344.0 41 26303.5 42 33263.0 43 38996.5 44 44730.0 45 46039.5 46 47349.0 47 43000.0 48 38651.0 49 36503.5 50 34356.0 51 30922.5 52 27489.0 53 25571.5 54 23654.0 55 21833.0 56 20012.0 57 18761.5 58 17511.0 59 16596.5 60 15682.0 61 14165.5 62 12649.0 63 11577.5 64 10506.0 65 8856.0 66 7206.0 67 6340.5 68 5475.0 69 4671.0 70 3867.0 71 3326.5 72 2786.0 73 2418.0 74 2050.0 75 1584.0 76 1118.0 77 868.5 78 619.0 79 434.0 80 249.0 81 228.0 82 207.0 83 133.5 84 60.0 85 45.5 86 31.0 87 30.0 88 29.0 89 18.5 90 8.0 91 7.0 92 6.0 93 3.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 489535.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.868858010580716 #Duplication Level Percentage of deduplicated Percentage of total 1 75.22329745897186 26.22950478184567 2 8.126777597960315 5.667429082936929 3 3.8484286189947654 4.025709332387511 4 2.2873209870376847 3.1902508288655347 5 1.5971326850989689 2.7845096410386736 6 1.0900257251329837 2.2804771342525383 7 0.8795790970193427 2.146894305012958 8 0.6638382574142541 1.8517825551815164 9 0.5593079739479082 1.7552187294997672 >10 5.331933812396252 38.59230625363396 >50 0.36357705022436027 8.030459184820973 >100 0.028193373846153943 1.4211516522181262 >500 0.0 0.0 >1k 0.0 0.0 >5k 5.873619551282071E-4 2.024306518305802 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9884 2.019058902836365 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03676958746565619 0.0 2 0.0 0.0 0.0 0.15953915450376377 0.0 3 0.0 0.0 0.0 0.21796194347697304 0.0 4 0.0 0.0 0.0 0.3348075214233916 0.0 5 0.0 0.0 0.0 0.6030212344367614 0.0 6 0.0 0.0 0.0 0.8818572727179875 0.0 7 0.0 0.0 0.0 1.0734676785112403 0.0 8 0.0 0.0 0.0 1.6442133861725923 0.0 9 0.0 0.0 0.0 1.9330589232639137 0.0 10 0.0 0.0 0.0 2.395947174359341 0.0 11 0.0 0.0 0.0 2.7033817806694107 0.0 12 0.0 0.0 0.0 2.99733420490874 0.0 13 2.0427548592031214E-4 0.0 0.0 3.119286670003166 0.0 14 2.0427548592031214E-4 0.0 0.0 3.1646358278774755 0.0 15 2.0427548592031214E-4 0.0 0.0 3.2175431787308364 0.0 16 2.0427548592031214E-4 0.0 0.0 3.322540778493877 0.0 17 2.0427548592031214E-4 0.0 0.0 3.4393863564402953 0.0 18 2.0427548592031214E-4 0.0 0.0 3.6405977100718028 0.0 19 2.0427548592031214E-4 0.0 0.0 3.7259848631864934 0.0 20 6.128264577609364E-4 0.0 0.0 3.829143983576251 0.0 21 6.128264577609364E-4 0.0 0.0 3.9349586852829725 0.0 22 6.128264577609364E-4 0.0 0.0 4.057932527807001 0.0 23 6.128264577609364E-4 0.0 0.0 4.1764123096407815 0.0 24 6.128264577609364E-4 0.0 0.0 4.2681320028190015 0.0 25 6.128264577609364E-4 0.0 0.0 4.350455023644887 0.0 26 6.128264577609364E-4 0.0 0.0 4.428488259266446 0.0 27 6.128264577609364E-4 0.0 0.0 4.517143820155862 0.0 28 6.128264577609364E-4 0.0 0.0 4.601918146812792 0.0 29 6.128264577609364E-4 0.0 0.0 4.70548581817439 0.0 30 6.128264577609364E-4 0.0 0.0 4.83642640464931 0.0 31 6.128264577609364E-4 0.0 0.0 4.941219728926431 0.0 32 6.128264577609364E-4 0.0 0.0 5.030283840787686 0.0 33 6.128264577609364E-4 0.0 0.0 5.121390707508145 0.0 34 6.128264577609364E-4 0.0 0.0 5.226388307271186 0.0 35 6.128264577609364E-4 0.0 0.0 5.355286138886903 0.0 36 6.128264577609364E-4 0.0 0.0 5.455381126987856 0.0 37 6.128264577609364E-4 0.0 0.0 5.57631221465268 0.0 38 6.128264577609364E-4 0.0 0.0 5.70684425015576 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 30 2.5247264E-6 44.000004 31 CGGGTAT 25 4.4390832E-5 44.0 6 TTAGCAC 25 4.4390832E-5 44.0 29 CAACCCG 20 7.852049E-4 44.0 23 ATTCGAT 20 7.852049E-4 44.0 14 ACGGGTA 20 7.852049E-4 44.0 5 TAGCCGT 40 8.296411E-9 44.0 44 TCTAACG 20 7.852049E-4 44.0 1 AGACACG 25 4.4390832E-5 44.0 24 ACGTAAG 20 7.852049E-4 44.0 1 TCGACGG 35 1.4438046E-7 44.0 2 TGTAACG 20 7.852049E-4 44.0 1 CGTTTTT 6630 0.0 43.469078 1 AACGGGA 65 0.0 40.615383 4 ACCTGGT 220 0.0 40.0 11 ATTGGGC 55 7.8216544E-11 40.0 4 GTTTTTT 7405 0.0 39.602974 2 CTGTTAG 45 2.3461325E-8 39.11111 1 TACCTGG 225 0.0 39.11111 10 TACGGGA 85 0.0 38.82353 4 >>END_MODULE