##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545958_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 425627 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.09697458102987 28.0 25.0 30.0 16.0 33.0 2 26.224104673810636 30.0 25.0 31.0 10.0 33.0 3 26.48886701266602 30.0 25.0 31.0 16.0 33.0 4 27.980346641542948 32.0 19.0 35.0 10.0 37.0 5 31.20696760308909 33.0 30.0 35.0 19.0 37.0 6 29.871941864590358 33.0 28.0 35.0 17.0 37.0 7 29.82836380210842 32.0 28.0 35.0 17.0 35.0 8 32.44623813808804 33.0 32.0 35.0 28.0 35.0 9 27.085213109130766 31.0 23.0 34.0 10.0 35.0 10 31.717719975471482 34.0 30.0 37.0 17.0 38.0 11 33.698245177115176 35.0 32.0 37.0 27.0 39.0 12 33.01520815173849 35.0 31.0 37.0 23.0 39.0 13 32.871861982440024 35.0 31.0 37.0 22.0 39.0 14 32.681227929619126 35.0 30.0 38.0 21.0 40.0 15 31.767871869030866 34.0 27.0 38.0 18.0 40.0 16 30.434899571690707 33.0 26.0 38.0 17.0 40.0 17 30.54054606498178 32.0 26.0 37.0 17.0 40.0 18 31.49290106125786 34.0 28.0 38.0 18.0 39.0 19 31.103795106983345 34.0 27.0 37.0 18.0 39.0 20 31.800120763015503 34.0 30.0 37.0 21.0 39.0 21 32.50925810627615 34.0 31.0 37.0 23.0 39.0 22 32.886717712927044 34.0 31.0 37.0 25.0 39.0 23 34.16197985560127 35.0 33.0 38.0 28.0 40.0 24 33.80451193180884 35.0 33.0 38.0 26.0 40.0 25 32.5744912799235 35.0 31.0 37.0 23.0 39.0 26 26.28865415023013 33.0 20.0 36.0 0.0 39.0 27 29.464554645264517 33.0 23.0 37.0 12.0 39.0 28 30.970297936925995 34.0 27.0 36.0 18.0 39.0 29 32.29110465266536 34.0 30.0 37.0 23.0 39.0 30 32.05193514509183 34.0 30.0 37.0 22.0 39.0 31 30.933441722447117 33.0 29.0 36.0 18.0 38.0 32 31.10434723361065 34.0 29.0 37.0 18.0 39.0 33 30.810211758182636 34.0 29.0 37.0 17.0 39.0 34 30.728776604867644 34.0 29.0 37.0 15.0 39.0 35 29.85862738970977 34.0 27.0 37.0 10.0 39.0 36 29.54878802331619 33.0 25.0 37.0 10.0 39.0 37 29.576370859931348 33.0 26.0 37.0 10.0 39.0 38 29.333362310191788 33.0 26.0 36.0 10.0 38.0 39 29.220540520220755 33.0 25.0 36.0 9.0 39.0 40 29.17004795278495 33.0 25.0 36.0 10.0 38.0 41 28.549814743895478 33.0 23.0 35.0 8.0 38.0 42 28.706463640699486 33.0 24.0 36.0 8.0 38.0 43 28.287777796051472 32.0 23.0 35.0 8.0 38.0 44 28.018262469251244 32.0 23.0 35.0 8.0 38.0 45 27.505503645210478 31.0 23.0 35.0 8.0 38.0 46 27.084717369903696 31.0 23.0 34.0 7.0 38.0 47 27.207780521442483 31.0 23.0 34.0 8.0 37.0 48 27.314063722461217 31.0 23.0 34.0 8.0 37.0 49 27.15136962645697 31.0 23.0 34.0 8.0 37.0 50 28.871702218139358 33.0 24.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 6.0 12 34.0 13 62.0 14 154.0 15 357.0 16 683.0 17 1349.0 18 2107.0 19 3386.0 20 5082.0 21 6832.0 22 9182.0 23 12083.0 24 15375.0 25 19313.0 26 22517.0 27 24331.0 28 26930.0 29 30950.0 30 36684.0 31 42150.0 32 44624.0 33 43225.0 34 36015.0 35 26530.0 36 12947.0 37 2642.0 38 71.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.912016859832672 23.293635037250926 26.72104918156038 26.073298921356024 2 38.98530873276366 16.91175606810658 30.553042922558955 13.5498922765708 3 28.606267929431166 14.137026081522084 43.604611549549254 13.652094439497494 4 25.7720962250985 24.41832872444652 36.47865384479838 13.330921205656596 5 19.26334560542447 29.212432481961905 39.00950832536469 12.514713587248929 6 18.51174854978655 33.82656645372592 37.245522488000056 10.416162508487478 7 77.1269209895049 3.2448599360472903 18.154863295796556 1.4733557786512606 8 78.96092118216185 1.9768482732533417 17.31539587479178 1.7468346697930348 9 67.21331118561558 2.883510679538657 17.09783448888346 12.805343645962312 10 47.942682207660695 20.123958301517526 23.031433626156236 8.90192586466554 11 41.50300615327505 18.175538675882873 29.656013363813855 10.66544180702822 12 36.47207531477091 18.930659944035504 32.503812023203416 12.093452717990164 13 19.00678293435332 34.444948276307656 33.46662688222317 13.081641907115854 14 14.285747849642997 34.79149584025449 37.05732953971435 13.865426770388156 15 12.437885754428173 18.103174845580757 52.71775521759663 16.741184182394445 16 13.965044510804061 14.507303343067992 50.60839655379006 20.919255592337894 17 15.908765186419094 16.085680654657715 37.15929675514006 30.846257403783124 18 20.879079569670157 19.11885289232121 41.98793779529964 18.01412974270899 19 27.038228307884605 20.762075714181666 34.36553602097611 17.834159956957617 20 28.31610776571975 20.687127461368757 33.81012012865725 17.186644644254244 21 21.017933542749873 24.21227976608627 36.824261618741296 17.945525072422566 22 20.561900443345934 20.676554823824617 34.63008690708062 24.131457825748836 23 17.719270628977952 25.766692432575937 34.40618193864581 22.107854999800296 24 17.703999041414196 20.504808200607574 45.87890335904442 15.912289398933806 25 16.45689770620755 20.458758490415317 43.28437810571228 19.799965697664856 26 12.616680802674644 40.93137888338851 29.219950801993296 17.231989511943556 27 16.334020163194534 28.996045833558494 37.45086660385737 17.219067399389605 28 14.627831411071195 23.827435759479545 45.510035782504396 16.03469704694486 29 15.48468494714856 20.93946107742225 44.175533976932854 19.400319998496336 30 18.461234837075654 25.689629652254204 38.703841626588535 17.145293884081603 31 27.26824191134491 22.25516708291532 33.31320616408264 17.16338484165713 32 28.15258430503704 21.90180604144004 33.16918334598134 16.77642630754158 33 26.705777593996622 23.088290921393614 32.00736795363076 18.198563530979005 34 18.757738583313557 23.931752449915066 33.69523080067759 23.615278166093788 35 19.119792682325134 24.053220307922192 35.56470806598266 21.262278943770013 36 28.66899891219307 22.548616511640475 30.052134850467667 18.73024972569879 37 19.277677402984303 29.956041322566474 31.911979268232514 18.85430200621671 38 19.53306533655055 30.46117844967542 28.514168509046655 21.491587704727376 39 19.94657293827694 28.781538765162924 29.900358764833996 21.371529531726136 40 23.447290702892438 23.896980219769894 29.039981016241924 23.615748061095747 41 18.062293980410075 21.913788363990065 30.786815686034956 29.2371019695649 42 21.277550531333773 23.15548590667415 27.260018748810577 28.306944813181495 43 21.347799834127066 23.567348875893682 29.051728391290965 26.033122898688287 44 19.198030200151774 27.15452732087015 30.67098656805137 22.976455910926706 45 17.354867054956568 33.650825722992195 26.39118289018319 22.603124331868045 46 20.831150279470055 28.456136476304373 28.771436022620744 21.94127722160483 47 20.353971904977833 24.185495750974447 30.005615245273443 25.454917098774278 48 21.32289539902309 22.460981093774596 33.61699328285095 22.59913022435137 49 20.28043333717081 22.393081265991114 33.41564327451031 23.910842122327765 50 19.07938171215642 28.889379668113158 30.658534350499384 21.37270426923104 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 143.0 1 267.0 2 391.0 3 4646.0 4 8901.0 5 7114.0 6 5327.0 7 5276.0 8 5225.0 9 5651.5 10 6078.0 11 6374.5 12 6671.0 13 6663.5 14 6656.0 15 6477.5 16 6299.0 17 5905.0 18 5511.0 19 5279.0 20 5047.0 21 4781.0 22 4515.0 23 4196.0 24 3877.0 25 3757.0 26 3637.0 27 3681.5 28 3726.0 29 4165.5 30 4605.0 31 5185.0 32 5765.0 33 6543.0 34 7321.0 35 7969.5 36 8618.0 37 9336.5 38 10055.0 39 13139.5 40 16224.0 41 21728.0 42 27232.0 43 32336.5 44 37441.0 45 38795.5 46 40150.0 47 36748.0 48 33346.0 49 31227.0 50 29108.0 51 26752.5 52 24397.0 53 22485.0 54 20573.0 55 19209.0 56 17845.0 57 16622.5 58 15400.0 59 14504.0 60 13608.0 61 12409.5 62 11211.0 63 10252.5 64 9294.0 65 7967.0 66 6640.0 67 5780.5 68 4921.0 69 4113.0 70 3305.0 71 2916.5 72 2528.0 73 2125.0 74 1722.0 75 1376.0 76 1030.0 77 800.5 78 571.0 79 454.5 80 338.0 81 264.0 82 190.0 83 138.0 84 86.0 85 62.5 86 39.0 87 38.5 88 38.0 89 26.0 90 14.0 91 9.5 92 5.0 93 3.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 425627.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.26994652628913 #Duplication Level Percentage of deduplicated Percentage of total 1 82.85016332276514 42.4772344325249 2 6.805534564962433 6.9783878645687265 3 2.651940073997603 4.078944773543411 4 1.5606476945763175 3.200572953892168 5 1.027067338091545 2.6328843751425812 6 0.7284482171185882 2.2408500683304404 7 0.5718132320632908 2.0521783681636636 8 0.4612827200779956 1.8919952313520025 9 0.37043663530079896 1.709303983492539 >10 2.8687142988899517 27.834153156125446 >50 0.09599386179991128 3.0995880808812104 >100 0.00746066283418956 0.5138354572583578 >500 0.0 0.0 >1k 0.0 0.0 >5k 4.97377522279304E-4 1.2900712547245814 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5059 1.1885994074624027 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03406738764223134 0.0 2 0.0 0.0 0.0 0.1334501805571545 0.0 3 0.0 0.0 0.0 0.17597567823469845 0.0 4 0.0 0.0 0.0 0.2532734060574165 0.0 5 0.0 0.0 0.0 0.424080239270535 0.0 6 0.0 0.0 0.0 0.5892483324601118 0.0 7 0.0 0.0 0.0 0.7003785004240802 0.0 8 0.0 0.0 0.0 1.0621976519346752 0.0 9 0.0 0.0 0.0 1.2757649303263185 0.0 10 0.0 0.0 0.0 1.581901524104439 0.0 11 0.0 0.0 0.0 1.8093307050539558 0.0 12 0.0 0.0 0.0 2.0116205033985155 0.0 13 0.0 0.0 0.0 2.094791918745756 0.0 14 0.0 0.0 0.0 2.130034043892892 0.0 15 0.0 0.0 0.0 2.1666858540459133 0.0 16 0.0 0.0 0.0 2.232471154320567 0.0 17 0.0 0.0 0.0 2.3264501547129295 0.0 18 0.0 0.0 0.0 2.4561411752543894 0.0 19 0.0 0.0 0.0 2.5137033129947115 0.0 20 0.0 0.0 0.0 2.5830128257840785 0.0 21 0.0 0.0 0.0 2.649033073559713 0.0 22 0.0 0.0 0.0 2.7211619563608513 0.0 23 0.0 0.0 0.0 2.799164526686512 0.0 24 0.0 0.0 0.0 2.8574315069297764 0.0 25 0.0 0.0 0.0 2.903716164623015 0.0 26 0.0 0.0 0.0 2.9474163998054634 0.0 27 0.0 0.0 0.0 3.0113221200722697 0.0 28 0.0 0.0 0.0 3.075932682842019 0.0 29 0.0 0.0 0.0 3.1485314606451187 0.0 30 0.0 0.0 0.0 3.2425104610374813 0.0 31 0.0 0.0 0.0 3.32521198138276 0.0 32 0.0 0.0 0.0 3.394991389174089 0.0 33 0.0 0.0 0.0 3.4685299569811128 0.0 34 0.0 0.0 0.0 3.5484121073146206 0.0 35 0.0 0.0 0.0 3.6459153202216963 0.0 36 0.0 0.0 0.0 3.729086735568937 0.0 37 0.0 0.0 0.0 3.8103785709083304 0.0 38 0.0 0.0 0.0 3.90882157381933 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTTG 20 7.850887E-4 44.000004 1 CAACCCG 20 7.850887E-4 44.000004 23 TTCGTAG 20 7.850887E-4 44.000004 1 TCGATTA 30 2.523946E-6 44.000004 41 CGACAGG 40 8.290954E-9 44.000004 2 TTATCGG 20 7.850887E-4 44.000004 2 ACGGGTG 20 7.850887E-4 44.000004 5 ATGTACG 20 7.850887E-4 44.000004 1 CGAATAA 20 7.850887E-4 44.000004 13 CGTCGGG 40 8.290954E-9 44.000004 3 GCGTAAA 20 7.850887E-4 44.000004 1 TACGTAG 30 2.523946E-6 44.000004 1 TAGTACA 20 7.850887E-4 44.000004 41 GTCATTA 25 4.438102E-5 44.0 20 CGGGTAT 35 1.4432044E-7 44.0 6 TTGGCGA 25 4.438102E-5 44.0 5 TGATTCG 35 1.4432044E-7 44.0 15 ACTAACC 35 1.4432044E-7 44.0 14 CGTTTTT 6145 0.0 43.140766 1 CGGGAAT 920 0.0 41.369564 9 >>END_MODULE