##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545954_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 904095 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.934491397474822 28.0 25.0 30.0 16.0 33.0 2 26.109284975583318 30.0 25.0 31.0 10.0 33.0 3 26.354018106504295 30.0 25.0 31.0 16.0 33.0 4 28.093914909384523 32.0 19.0 35.0 10.0 37.0 5 31.2666755152943 33.0 30.0 35.0 19.0 37.0 6 29.774769244382504 33.0 28.0 35.0 17.0 37.0 7 29.786617556783302 32.0 28.0 35.0 17.0 35.0 8 32.55176170645784 33.0 32.0 35.0 28.0 35.0 9 27.143111066867974 31.0 23.0 34.0 10.0 35.0 10 31.903000237806868 34.0 31.0 37.0 18.0 37.0 11 33.90292723662889 35.0 32.0 37.0 27.0 39.0 12 33.15616279262688 35.0 31.0 37.0 25.0 39.0 13 32.986475978741176 35.0 31.0 38.0 22.0 39.0 14 32.69209209209209 35.0 30.0 38.0 21.0 40.0 15 31.830745662789862 34.0 27.0 38.0 18.0 40.0 16 30.46022818398509 33.0 27.0 37.0 17.0 40.0 17 30.581800585115502 32.0 26.0 37.0 17.0 40.0 18 31.531985023697732 34.0 29.0 38.0 18.0 39.0 19 31.186823287375773 34.0 27.0 37.0 18.0 39.0 20 31.962200874908056 34.0 30.0 37.0 22.0 39.0 21 32.686792870218284 34.0 31.0 37.0 23.0 39.0 22 33.03181855889038 34.0 31.0 37.0 25.0 39.0 23 34.38594174284782 35.0 33.0 38.0 29.0 40.0 24 34.034037352269394 35.0 33.0 38.0 27.0 40.0 25 32.78404924261278 35.0 31.0 37.0 23.0 39.0 26 26.515299830216957 33.0 21.0 36.0 0.0 39.0 27 29.671232558525375 34.0 24.0 37.0 14.0 39.0 28 31.251391723214926 34.0 28.0 36.0 20.0 39.0 29 32.59974338979864 34.0 30.0 37.0 23.0 39.0 30 32.35061359702244 34.0 31.0 37.0 23.0 39.0 31 31.208232541934198 34.0 29.0 36.0 20.0 38.0 32 31.4146367361837 34.0 30.0 37.0 20.0 39.0 33 31.215909832484417 34.0 30.0 37.0 18.0 39.0 34 31.190100597835404 34.0 30.0 37.0 16.0 39.0 35 30.366906132651987 34.0 29.0 37.0 12.0 39.0 36 30.010168179228952 34.0 27.0 37.0 10.0 39.0 37 30.025932009357422 34.0 27.0 37.0 10.0 39.0 38 29.82596850994641 33.0 27.0 36.0 10.0 38.0 39 29.740549389168173 33.0 27.0 36.0 10.0 39.0 40 29.658634324932667 33.0 27.0 36.0 10.0 38.0 41 29.096642498852443 33.0 25.0 36.0 10.0 38.0 42 29.27534274606098 33.0 26.0 36.0 10.0 38.0 43 28.788398343094475 33.0 25.0 35.0 9.0 38.0 44 28.550819327614906 32.0 24.0 35.0 9.0 38.0 45 28.097974217311233 32.0 23.0 35.0 9.0 38.0 46 27.7547271027934 31.0 23.0 35.0 8.0 38.0 47 27.90920533793462 32.0 23.0 35.0 8.0 38.0 48 27.985003788318707 32.0 23.0 35.0 8.0 37.0 49 27.789720106847177 32.0 24.0 35.0 8.0 37.0 50 29.54922657464094 34.0 26.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 7.0 11 15.0 12 42.0 13 97.0 14 255.0 15 578.0 16 1127.0 17 2154.0 18 3733.0 19 5989.0 20 8905.0 21 12597.0 22 17396.0 23 23071.0 24 30342.0 25 37825.0 26 45192.0 27 49437.0 28 55541.0 29 65331.0 30 78548.0 31 92403.0 32 99269.0 33 96754.0 34 80439.0 35 60263.0 36 30243.0 37 6370.0 38 171.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.37764283620637 23.32719459791283 26.83833004274993 24.456832523130867 2 37.74138779663642 17.389433632527552 31.137878209701412 13.731300361134616 3 28.329987446009547 15.001631465719864 42.237596712734835 14.430784375535758 4 25.165165165165167 25.649295704544322 35.6727998716949 13.512739258595612 5 19.393869007128675 29.74211780841615 38.238127630392825 12.62588555406235 6 18.22739866938762 35.427471670565595 35.81083846277217 10.534291197274623 7 79.0562938629237 3.293348597216 16.1396755871894 1.510681952670903 8 81.42850032352796 1.6765937207926158 15.584534811054148 1.3103711446252881 9 69.45365254757519 2.9095393736277715 15.630879498282813 12.005928580514217 10 48.8270591033022 21.078426492791134 21.38060712646348 8.71390727744319 11 43.55371946532168 17.277498492968107 29.07526310841228 10.093518933297938 12 39.25605163174224 19.169003257401048 30.286197800009955 11.288747310846759 13 19.133608746868415 37.67867314828641 31.007913991339404 12.17980411350577 14 13.095194642155969 37.2208672761159 36.161354724890636 13.522583356837501 15 11.531420923686117 18.469519242999908 54.00759875897998 15.991461074334001 16 13.223499742836758 14.717811734386322 51.313634076065014 20.745054446711904 17 15.003511799091909 16.020108506296353 36.84103993496259 32.13533975964915 18 19.716733307893527 19.693948091738147 42.479385462810875 18.109933137557448 19 27.241495639285695 20.83409376227056 33.74346722413021 18.18094337431354 20 28.66247462932546 20.697493073183683 33.62047130002931 17.01956099746155 21 19.700142131081357 25.29037324617435 36.45358065247568 18.555903970268613 22 20.193895553011576 21.23825482941505 33.802421205736124 24.765428411837252 23 16.812834934381897 27.36106272017874 33.78881644075014 22.03728590468922 24 16.804981777357465 20.290788025594654 48.0545739109275 14.849656286120375 25 15.136794252816351 21.50293940349189 44.26183089166514 19.098435452026614 26 11.631631631631631 42.6942965064512 29.44402966502414 16.230042196893027 27 14.990349465487588 31.238752564719412 36.741935305471216 17.02896266432178 28 12.875748676853648 25.47342923033531 46.049253673563065 15.601568419247977 29 13.645358065247567 21.722053545257967 45.266924382946485 19.365664006547984 30 17.31344604272781 27.234859168560828 38.233703316576246 17.217991472135118 31 27.195703991284105 23.08197700462894 33.181800585115504 16.54051841897146 32 28.20599605129992 22.615433112670683 33.492166199348524 15.686404636680878 33 26.589241174876534 24.45639009174921 31.45687123587676 17.4974974974975 34 17.418634103716975 24.383610129466483 34.460537885952256 23.73721788086429 35 18.773248386508055 24.393122404172125 36.21942384373323 20.614205365586578 36 29.356207035765046 23.11958367206986 29.43341131186435 18.090797980300742 37 18.328826063632693 31.819333145299993 31.31839021341784 18.533450577649475 38 19.51586946062084 31.329672213650113 28.532842234499693 20.62161609122935 39 19.77214783844618 29.88502314469165 29.84166486928918 20.501164147572986 40 24.072359652470148 24.085079554692815 28.503973586846516 23.33858720599052 41 16.757641619520072 22.848262627268152 30.54413529551651 29.849960457695264 42 20.446745087629065 22.900801353840027 27.538145880687313 29.114307677843588 43 20.734878524933773 23.83455278482903 29.161647835680988 26.268920854556217 44 18.15307019726909 27.855258573490616 31.0621118355925 22.929559393647793 45 16.138127077353598 35.93460864179096 25.481171779514323 22.44609250134112 46 19.68609493471372 30.334754644146912 28.453315193646684 21.52583522749269 47 19.903439350953164 24.817635314872884 30.1306831693572 25.148242164816754 48 20.94757741166581 22.009080904108526 34.75198955861939 22.29135212560627 49 20.34476465415692 23.169578418197204 33.67898285025357 22.80667407739231 50 18.13271835371283 31.67410504427079 29.42301417439539 20.770162427620992 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 260.0 1 471.0 2 682.0 3 8703.5 4 16725.0 5 13421.0 6 10117.0 7 10253.0 8 10389.0 9 11349.0 10 12309.0 11 12807.0 12 13305.0 13 13299.5 14 13294.0 15 12678.5 16 12063.0 17 11386.0 18 10709.0 19 10070.0 20 9431.0 21 8766.5 22 8102.0 23 8133.5 24 8165.0 25 7694.5 26 7224.0 27 7777.0 28 8330.0 29 9634.0 30 10938.0 31 12912.5 32 14887.0 33 16698.5 34 18510.0 35 19951.0 36 21392.0 37 23763.0 38 26134.0 39 32536.5 40 38939.0 41 51189.5 42 63440.0 43 76555.5 44 89671.0 45 89280.5 46 88890.0 47 82420.5 48 75951.0 49 69429.0 50 62907.0 51 58678.0 52 54449.0 53 49782.5 54 45116.0 55 40414.5 56 35713.0 57 32382.0 58 29051.0 59 26863.5 60 24676.0 61 21819.0 62 18962.0 63 16735.0 64 14508.0 65 12035.0 66 9562.0 67 7932.0 68 6302.0 69 5437.5 70 4573.0 71 3894.5 72 3216.0 73 2717.5 74 2219.0 75 1734.0 76 1249.0 77 964.5 78 680.0 79 550.0 80 420.0 81 357.0 82 294.0 83 235.5 84 177.0 85 131.5 86 86.0 87 64.0 88 42.0 89 30.0 90 18.0 91 14.5 92 11.0 93 6.0 94 1.0 95 2.5 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 904095.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.928070419785826 #Duplication Level Percentage of deduplicated Percentage of total 1 81.93958961129104 33.53629293779271 2 7.007333380758143 5.735932681251703 3 2.7060355430411533 3.322584397920951 4 1.5033184967988422 2.4611170120139834 5 1.016510580942513 2.080190831963628 6 0.7047608231772032 1.7306700360061675 7 0.5470905754716088 1.567395311923221 8 0.4315820399086311 1.4131056097036212 9 0.353296109891516 1.301375525820872 >10 3.25016428796581 28.50347777174428 >50 0.45872187601552716 12.786279447027118 >100 0.08100324437635804 4.318884982150198 >500 2.9671518086538714E-4 0.07772147082929952 >1k 0.0 0.0 >5k 2.9671518086538714E-4 1.1649719838522972 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9593 1.0610610610610611 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023448863227868752 0.0 2 0.0 0.0 0.0 0.08074372715256693 0.0 3 0.0 0.0 0.0 0.11027602187823182 0.0 4 0.0 0.0 0.0 0.16480568966756812 0.0 5 0.0 0.0 0.0 0.2672285545213722 0.0 6 0.0 0.0 0.0 0.3900032629314397 0.0 7 0.0 0.0 0.0 0.46809240179405925 0.0 8 0.0 0.0 0.0 0.7160751912133128 0.0 9 0.0 0.0 0.0 0.8648427432957819 0.0 10 0.0 0.0 0.0 1.0672551004042716 0.0 11 0.0 0.0 0.0 1.220004534921662 0.0 12 0.0 0.0 0.0 1.3556097533998086 0.0 13 0.0 0.0 0.0 1.4129046173245068 0.0 14 0.0 0.0 0.0 1.4321503824266255 0.0 15 0.0 0.0 0.0 1.4593599123985865 0.0 16 0.0 0.0 0.0 1.5112349918979753 0.0 17 0.0 0.0 0.0 1.5965136407125358 0.0 18 0.0 0.0 0.0 1.7108821528711031 0.0 19 0.0 0.0 0.0 1.7513646242928012 0.0 20 0.0 0.0 0.0 1.8030184881013611 0.0 21 0.0 0.0 0.0 1.8545617440645066 0.0 22 0.0 0.0 0.0 1.9119672158346193 0.0 23 0.0 0.0 0.0 1.9736863935758964 0.0 24 0.0 0.0 0.0 2.0216901984857785 0.0 25 0.0 0.0 0.0 2.0584120031633844 0.0 26 0.0 0.0 0.0 2.09834143535801 0.0 27 0.0 0.0 0.0 2.1566317698914386 0.0 28 0.0 0.0 0.0 2.2071795552458537 0.0 29 0.0 0.0 0.0 2.275203380175756 0.0 30 0.0 0.0 0.0 2.359928989763244 0.0 31 0.0 0.0 0.0 2.431381657900995 0.0 32 0.0 0.0 0.0 2.4978569729950943 0.0 33 0.0 0.0 0.0 2.566876268533727 0.0 34 0.0 0.0 0.0 2.6460714858504915 0.0 35 0.0 0.0 0.0 2.7362168798632887 0.0 36 0.0 0.0 0.0 2.8092180578368424 0.0 37 0.0 0.0 0.0 2.8913996869797973 0.0 38 0.0 0.0 0.0 2.9921634341523844 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 20 7.8555883E-4 44.000004 6 TCGTTGC 20 7.8555883E-4 44.000004 28 ACCGGTA 20 7.8555883E-4 44.000004 40 CGAACGG 20 7.8555883E-4 44.000004 2 AGTCACG 20 7.8555883E-4 44.000004 1 TAGCACG 20 7.8555883E-4 44.000004 1 GGAACGT 20 7.8555883E-4 44.000004 8 TCGTCGG 20 7.8555883E-4 44.000004 2 TCGGTCA 20 7.8555883E-4 44.000004 16 TACGTTG 40 8.309144E-9 44.000004 1 TAGTACG 20 7.8555883E-4 44.000004 1 TCGTTCA 35 1.4456236E-7 44.0 16 CGAAAGG 75 0.0 44.0 2 TAACGGC 55 1.8189894E-12 44.0 3 ATATCGA 35 1.4456236E-7 44.0 18 CCGAACT 25 4.4420834E-5 44.0 12 CCGTTTG 30 2.5271147E-6 44.0 1 ATACCGG 50 2.7284841E-11 44.0 2 ATCGACG 30 2.5271147E-6 44.0 1 ACGAACT 35 1.4456236E-7 44.0 1 >>END_MODULE