##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545949_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1477103 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.522976393657043 31.0 31.0 33.0 30.0 34.0 2 31.925877883939034 31.0 31.0 34.0 30.0 34.0 3 31.98928578440366 33.0 31.0 34.0 30.0 34.0 4 35.75210530342163 37.0 35.0 37.0 35.0 37.0 5 35.673858898126944 37.0 35.0 37.0 33.0 37.0 6 35.72058075841698 37.0 35.0 37.0 33.0 37.0 7 35.97936704481678 37.0 35.0 37.0 35.0 37.0 8 35.97049359455637 37.0 35.0 37.0 35.0 37.0 9 37.77457496193563 39.0 38.0 39.0 35.0 39.0 10 37.31007654848714 39.0 37.0 39.0 34.0 39.0 11 36.96391585420922 39.0 37.0 39.0 33.0 39.0 12 35.81485380504948 37.0 35.0 39.0 32.0 39.0 13 35.337017797675585 37.0 35.0 39.0 31.0 39.0 14 36.25446769791951 38.0 35.0 41.0 31.0 41.0 15 36.5335992141374 38.0 35.0 41.0 32.0 41.0 16 36.77235643012031 38.0 35.0 41.0 32.0 41.0 17 36.72973381003221 38.0 35.0 41.0 32.0 41.0 18 36.65051861650812 37.0 35.0 40.0 32.0 41.0 19 36.50699578837766 37.0 35.0 40.0 32.0 41.0 20 36.28357128785196 36.0 35.0 40.0 32.0 41.0 21 36.10697832175549 35.0 35.0 40.0 31.0 41.0 22 35.989538982724966 35.0 35.0 40.0 31.0 41.0 23 35.95908206807515 35.0 35.0 40.0 31.0 41.0 24 35.98035411206937 35.0 35.0 40.0 31.0 41.0 25 35.93539990102247 35.0 35.0 40.0 31.0 41.0 26 35.71338288528288 35.0 35.0 40.0 31.0 41.0 27 35.679604604418245 35.0 35.0 40.0 31.0 41.0 28 35.68483240505232 36.0 35.0 40.0 31.0 41.0 29 35.66920587122225 36.0 35.0 40.0 31.0 41.0 30 35.58528010572046 36.0 35.0 40.0 30.0 41.0 31 35.340143510642115 35.0 34.0 40.0 30.0 41.0 32 35.07720043896736 35.0 34.0 40.0 29.0 41.0 33 34.811744340103566 35.0 34.0 40.0 27.0 41.0 34 34.56877888678041 35.0 34.0 40.0 26.0 41.0 35 34.34842729315424 35.0 34.0 40.0 24.0 41.0 36 34.13424182335287 35.0 33.0 40.0 23.0 41.0 37 34.042016704319195 35.0 33.0 40.0 23.0 41.0 38 33.978959490299594 35.0 33.0 40.0 23.0 41.0 39 33.91637617688137 35.0 33.0 40.0 23.0 41.0 40 33.73229422728137 35.0 33.0 40.0 23.0 41.0 41 33.75177898900754 35.0 33.0 40.0 23.0 41.0 42 33.708389326946055 35.0 33.0 40.0 23.0 41.0 43 33.59467213863894 35.0 33.0 40.0 23.0 41.0 44 33.48412399135334 35.0 33.0 39.0 22.0 41.0 45 33.36037365031416 35.0 33.0 39.0 22.0 41.0 46 33.354644869044336 35.0 33.0 39.0 23.0 41.0 47 33.31699278926385 35.0 33.0 39.0 22.0 41.0 48 33.24264455491594 35.0 33.0 39.0 22.0 41.0 49 33.18645348360947 35.0 33.0 39.0 21.0 41.0 50 32.97177380318096 35.0 33.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 1.0 13 2.0 14 16.0 15 38.0 16 106.0 17 330.0 18 736.0 19 1476.0 20 2528.0 21 4074.0 22 6361.0 23 9139.0 24 13632.0 25 19897.0 26 28832.0 27 35175.0 28 36732.0 29 37187.0 30 40712.0 31 46650.0 32 58114.0 33 78125.0 34 155697.0 35 282243.0 36 83257.0 37 103407.0 38 159075.0 39 273559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.85180518894079 22.560579729375675 28.216177206328872 16.371437875354662 2 33.041094629149086 24.43600750929353 30.372560342779074 12.150337518778311 3 28.823514677040123 24.208873721060755 34.67354680073089 12.294064801168233 4 25.329648643324127 26.155928191872874 33.64877060028989 14.865652564513104 5 22.04280947232522 32.00101820929211 32.21481508060034 13.741357237782333 6 19.59470666568276 39.86871599340059 30.35360431872388 10.182973022192765 7 85.11193870705021 4.386762466801571 9.106744756459095 1.3945540696891146 8 87.78886780407325 2.60611480715969 8.410990973547545 1.1940264152195208 9 84.41706502525552 4.041492028653384 9.605017388767067 1.9364255573240323 10 56.72583428508371 20.533977657617648 13.780826387868686 8.95936166942996 11 52.57900092275217 17.26298030672201 19.00470041696483 11.15331835356099 12 46.670272824576216 18.79293454823394 23.407033903526024 11.12975872366382 13 21.581704187182613 42.407063014562965 23.46891178204905 12.542321016205369 14 14.529724738220692 44.738247772836424 27.729955189313138 13.002072299629749 15 13.0872390077063 20.99494754258843 53.35680720978835 12.56100623991692 16 15.475494938403077 14.769518442518903 51.955821631937646 17.79916498714037 17 15.85705262259978 15.457080515035173 30.371138640974937 38.31472822139011 18 21.414417274895523 20.517188036311616 36.89092771458727 21.17746697420559 19 29.87198590755012 22.177532643288924 27.20114981825912 20.74933163090184 20 32.34845505018946 20.917295544048045 25.956686839035598 20.7775625667269 21 22.13115808443961 26.66009073165514 29.643159617169555 21.565591566735698 22 22.30656900703607 23.459907670622833 26.62894869213589 27.604574630205203 23 19.541088197640924 28.92926221123375 26.322131902785383 25.207517688339948 24 19.680076474017046 22.146729104199235 41.054009097537545 17.11918532424618 25 16.816227439792623 22.26852155875386 39.36069454872138 21.554556452732136 26 16.245718815817177 32.70584380371579 29.39740830531114 21.651029075155897 27 16.897806043315867 33.7212096922151 31.405595953701265 17.975388310767766 28 14.30272635015974 27.017479485181468 41.919351595657176 16.760442569001622 29 15.09603595686963 23.03691753384835 40.41194148275375 21.45510502652828 30 18.026704975888613 29.394768001960596 34.43165439376942 18.146872628381367 31 30.6516200969059 23.99981585576632 26.252468514382542 19.09609553294523 32 31.1102881789557 25.33655405208709 27.523402227197423 16.029755541759783 33 29.296805977646784 25.657249359049437 25.58142526282866 19.46451940047512 34 19.436085364392326 26.923037865335054 29.421780336239244 24.219096434033375 35 20.15729437960657 24.265741793226336 32.72507062811463 22.85189319905247 36 32.472143107149606 22.678039378431972 26.664694337497114 18.185123176921312 37 21.146528034944076 31.694878420800716 28.85851562145632 18.300077922798884 38 21.795974959092224 32.38122189177058 23.319700792700306 22.50310235643689 39 21.33845777850292 30.350016214170576 28.11848598235871 20.193040024967793 40 24.295597531113266 25.565786542983123 25.77694311094081 24.3616728149628 41 17.079783874245734 24.179356483603378 27.66895741190696 31.071902230243932 42 22.67519597482369 24.217200831627856 24.165681066249274 28.94192212729918 43 22.78222981064963 25.840242691267974 25.07502862021132 26.302498877871077 44 19.99535577410648 29.64180561545133 28.396462535110956 21.96637607533124 45 17.035508018059677 37.82363179818875 22.98404376675154 22.156816417000034 46 22.46613810952926 32.171757825960675 25.858927914979525 19.503176149530535 47 22.216460192687983 26.641540908115413 27.315833763793044 23.826165135403556 48 24.28991072389671 22.725767938999514 31.161537143990635 21.82278419311314 49 21.6219857382999 22.335544643806152 32.753369264025594 23.28910035386835 50 19.761181176938912 32.15205710096046 26.86420649067804 21.22255523142259 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 421.0 1 1220.5 2 2020.0 3 12038.0 4 22056.0 5 16153.0 6 10250.0 7 10544.0 8 10838.0 9 11388.5 10 11939.0 11 11832.5 12 11726.0 13 10934.5 14 10143.0 15 9278.0 16 8413.0 17 7648.5 18 6884.0 19 6344.0 20 5804.0 21 5274.5 22 4745.0 23 5396.5 24 6048.0 25 6580.5 26 7113.0 27 8414.5 28 9716.0 29 11669.5 30 13623.0 31 14886.5 32 16150.0 33 18271.5 34 20393.0 35 22750.0 36 25107.0 37 28620.0 38 32133.0 39 45647.5 40 59162.0 41 89148.5 42 119135.0 43 138529.5 44 157924.0 45 158179.5 46 158435.0 47 146175.5 48 133916.0 49 124356.0 50 114796.0 51 109540.5 52 104285.0 53 92032.5 54 79780.0 55 73633.5 56 67487.0 57 62148.0 58 56809.0 59 55964.0 60 55119.0 61 49861.0 62 44603.0 63 37487.0 64 30371.0 65 26143.5 66 21916.0 67 17735.0 68 13554.0 69 11498.5 70 9443.0 71 7796.0 72 6149.0 73 5211.0 74 4273.0 75 3317.0 76 2361.0 77 1644.5 78 928.0 79 658.0 80 388.0 81 410.0 82 432.0 83 333.0 84 234.0 85 135.5 86 37.0 87 34.5 88 32.0 89 19.5 90 7.0 91 4.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1477103.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.664701435554456 #Duplication Level Percentage of deduplicated Percentage of total 1 81.39383158506283 13.564039020608739 2 6.714992581798963 2.2380669303528538 3 2.21312576194747 1.1064324018656562 4 1.1452556917099954 0.7634137667886588 5 0.7336258221053311 0.6112827645399264 6 0.5454729260265618 0.5454086072046559 7 0.427932359632744 0.4991955505524396 8 0.32706685439272726 0.436037718233661 9 0.2869385642940982 0.43035709538770134 >10 3.0955141348286523 12.376613361792835 >50 1.3493183369077062 16.29960355180613 >100 1.7595341061677872 49.15631147199975 >500 0.006570022333415309 0.7163901407122528 >1k 0.0 0.0 >5k 4.1062639583845683E-4 0.4284381193045577 >10k+ 4.1062639583845683E-4 0.8284094988501798 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12106 0.8195772400435177 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6261 0.4238702378913319 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03263144140929915 0.0 2 0.0 0.0 0.0 0.11163744166791348 0.0 3 0.0 0.0 0.0 0.15665799879900047 0.0 4 0.0 0.0 0.0 0.2236810838512954 0.0 5 0.0 0.0 0.0 0.3609768580796329 0.0 6 0.0 0.0 0.0 0.48899772053810736 0.0 7 0.0 0.0 0.0 0.571524125264115 0.0 8 0.0 0.0 0.0 0.7941897078267393 0.0 9 0.0 0.0 0.0 0.8913393311096112 0.0 10 0.0 0.0 0.0 1.0695936573143512 0.0 11 0.0 0.0 0.0 1.2042491281921437 0.0 12 0.0 0.0 0.0 1.343508204911912 0.0 13 0.0 0.0 0.0 1.422446505084615 0.0 14 0.0 0.0 0.0 1.4581244503599275 0.0 15 6.770008591140903E-5 0.0 0.0 1.4951563973534683 0.0 16 6.770008591140903E-5 0.0 0.0 1.5709804935742464 0.0 17 6.770008591140903E-5 0.0 0.0 1.6568919025958244 0.0 18 6.770008591140903E-5 0.0 0.0 1.8224186126492194 0.0 19 6.770008591140903E-5 0.0 0.0 1.8786773840416005 0.0 20 6.770008591140903E-5 0.0 0.0 1.9437371666024643 0.0 21 6.770008591140903E-5 0.0 0.0 2.020305963768268 0.0 22 6.770008591140903E-5 0.0 0.0 2.095656159387666 0.0 23 6.770008591140903E-5 0.0 0.0 2.1759484612785975 0.0 24 6.770008591140903E-5 0.0 0.0 2.239315741691676 0.0 25 6.770008591140903E-5 0.0 0.0 2.290226206297056 0.0 26 6.770008591140903E-5 0.0 0.0 2.347026578376728 0.0 27 6.770008591140903E-5 0.0 0.0 2.4037592503704888 0.0 28 6.770008591140903E-5 0.0 0.0 2.462387524769769 0.0 29 6.770008591140903E-5 0.0 0.0 2.5202710982240237 0.0 30 6.770008591140903E-5 0.0 0.0 2.6038130042387024 0.0 31 6.770008591140903E-5 0.0 0.0 2.687151809995647 0.0 32 1.3540017182281806E-4 0.0 0.0 2.759726302092677 0.0 33 1.3540017182281806E-4 0.0 0.0 2.8289157898941375 0.0 34 1.3540017182281806E-4 0.0 0.0 2.9024380831939274 0.0 35 1.3540017182281806E-4 0.0 0.0 3.005951514552472 0.0 36 1.3540017182281806E-4 0.0 0.0 3.0867854171306943 0.0 37 1.3540017182281806E-4 0.0 0.0 3.1718844251213354 0.0 38 1.3540017182281806E-4 0.0 0.0 3.2528537278713805 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGT 20 7.857211E-4 44.000004 13 CGTGAGC 20 7.857211E-4 44.000004 18 CTATACG 20 7.857211E-4 44.000004 1 GACCGTA 20 7.857211E-4 44.000004 9 CGTTGCA 20 7.857211E-4 44.000004 38 ATCGTTA 20 7.857211E-4 44.000004 15 ATCCGTT 20 7.857211E-4 44.000004 38 ATCGTAG 80 0.0 44.000004 1 CGTAGGT 20 7.857211E-4 44.000004 35 ACTACGG 20 7.857211E-4 44.000004 2 ATGCGGT 20 7.857211E-4 44.000004 3 CGTCGAG 20 7.857211E-4 44.000004 42 CGCACGA 20 7.857211E-4 44.000004 40 CGATATC 40 8.314601E-9 44.000004 10 AATGTCG 20 7.857211E-4 44.000004 2 CGCTTAT 20 7.857211E-4 44.000004 44 ACGGTAC 95 0.0 44.000004 13 TCACGTC 40 8.314601E-9 44.000004 38 AACGTAG 25 4.4434593E-5 44.0 1 AACCGGT 35 1.4464604E-7 44.0 22 >>END_MODULE