##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545948_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2180880 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48206274531382 31.0 31.0 33.0 30.0 34.0 2 31.89012371152929 31.0 31.0 34.0 30.0 34.0 3 31.983717581893547 33.0 31.0 34.0 30.0 34.0 4 35.736111569641615 37.0 35.0 37.0 35.0 37.0 5 35.6522788965922 37.0 35.0 37.0 33.0 37.0 6 35.70739242874436 37.0 35.0 37.0 33.0 37.0 7 35.97881405671105 37.0 35.0 37.0 35.0 37.0 8 35.96536489857305 37.0 35.0 37.0 35.0 37.0 9 37.76801153662742 39.0 38.0 39.0 35.0 39.0 10 37.23708365430468 39.0 37.0 39.0 34.0 39.0 11 36.96808490150765 39.0 37.0 39.0 33.0 39.0 12 36.3694944242691 38.0 35.0 39.0 32.0 39.0 13 36.119327060636074 38.0 35.0 39.0 32.0 39.0 14 37.12636687942482 39.0 35.0 41.0 32.0 41.0 15 37.28887467444334 39.0 35.0 41.0 32.0 41.0 16 37.432539617035324 39.0 35.0 41.0 33.0 41.0 17 37.35714252962107 39.0 35.0 41.0 32.0 41.0 18 37.261801199515794 39.0 35.0 41.0 32.0 41.0 19 37.1725312717802 38.0 35.0 41.0 32.0 41.0 20 36.99210777300906 38.0 35.0 41.0 32.0 41.0 21 36.86310342613991 38.0 35.0 41.0 32.0 41.0 22 36.7810425149481 38.0 35.0 41.0 32.0 41.0 23 36.6867718535637 38.0 35.0 41.0 31.0 41.0 24 36.74173452918088 38.0 35.0 41.0 32.0 41.0 25 36.70239398774807 38.0 35.0 41.0 32.0 41.0 26 36.482494681046184 38.0 35.0 41.0 31.0 41.0 27 36.46342944132644 38.0 35.0 41.0 31.0 41.0 28 36.44328069403177 38.0 35.0 41.0 31.0 41.0 29 36.382312185906606 38.0 35.0 40.0 31.0 41.0 30 36.26706375408092 38.0 35.0 40.0 31.0 41.0 31 36.08632616191629 38.0 35.0 40.0 30.0 41.0 32 35.89707640952276 38.0 35.0 40.0 30.0 41.0 33 35.669770459630975 38.0 35.0 40.0 29.0 41.0 34 35.44916134771285 38.0 35.0 40.0 27.0 41.0 35 35.22067422324933 38.0 34.0 40.0 26.0 41.0 36 35.05628507758336 38.0 34.0 40.0 25.0 41.0 37 34.99166208136165 38.0 34.0 40.0 25.0 41.0 38 34.90691876673636 38.0 34.0 40.0 25.0 41.0 39 34.81527227541176 37.0 34.0 40.0 24.0 41.0 40 34.67480741718939 37.0 34.0 40.0 23.0 41.0 41 34.61935594805767 37.0 34.0 40.0 23.0 41.0 42 34.60836726459044 37.0 34.0 40.0 23.0 41.0 43 34.516150819852534 37.0 34.0 40.0 23.0 41.0 44 34.39022458823961 37.0 34.0 40.0 23.0 41.0 45 34.264625747404715 36.0 33.0 40.0 23.0 41.0 46 34.22482346575694 36.0 33.0 40.0 23.0 41.0 47 34.15340413044276 36.0 33.0 40.0 23.0 41.0 48 34.03638164410697 36.0 33.0 40.0 23.0 41.0 49 33.98572502842889 36.0 33.0 40.0 23.0 41.0 50 33.83911723707861 35.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 6.0 13 5.0 14 21.0 15 56.0 16 167.0 17 386.0 18 862.0 19 1757.0 20 3111.0 21 5011.0 22 7533.0 23 11426.0 24 16779.0 25 25500.0 26 36441.0 27 45369.0 28 48064.0 29 49418.0 30 54969.0 31 64069.0 32 78956.0 33 101912.0 34 174876.0 35 274488.0 36 147878.0 37 193457.0 38 301849.0 39 536512.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.21209786875023 22.87915887164814 29.00851949671692 14.900223762884707 2 33.621015369942405 24.2274678111588 28.954504603646235 13.19701221525256 3 28.42430578482081 24.671875573163128 34.22476248120025 12.679056160815819 4 25.885514104398226 26.90056307545578 32.74274604746707 14.471176772678918 5 22.39426286636587 31.288424856021425 32.174672609221965 14.142639668390741 6 20.13815524008657 40.879232236528374 28.659348519863542 10.323264003521514 7 87.2888925571329 3.2076501228861742 8.173764718829096 1.3296926011518286 8 88.7197828399545 1.9918106452441218 7.887320714573934 1.4010858002274311 9 84.77444884633726 3.9176846043798834 9.228935108763435 2.078931440519423 10 42.73371299658854 31.766488756832107 14.530785737867284 10.96901250871208 11 37.61371556435934 21.68262352811709 25.47998972891677 15.223671178606802 12 34.92626829536701 21.238995267965226 28.749037085946956 15.08569935072081 13 22.886266094420602 31.78042808407615 29.61309196287737 15.720213858625876 14 16.528236308279226 34.21627966692344 32.247166281501045 17.008317743296285 15 15.75790506584498 23.3866145776017 44.0109497083746 16.844530648178715 16 19.50474120538498 20.196526172921022 40.9360441656579 19.362688456036096 17 19.950937236344963 20.21459227467811 31.04058911998826 28.793881368988668 18 22.391557536407323 22.817853343604416 35.00481457026521 19.785774549723047 19 26.453770954843915 24.483694655368478 28.60189464803199 20.46063974175562 20 27.95678808554345 23.410916694178496 28.448424489197023 20.183870731081033 21 23.53141850995928 25.566193463189173 31.334094493965736 19.568293532885807 22 22.85086753970874 22.209245809031216 29.547476248120024 25.392410403140016 23 19.88302886908037 27.21089651883643 29.52175268698874 23.384321925094458 24 20.25943655771982 24.05712372987051 36.98360294926818 18.699836763141484 25 20.217068339385936 24.92892777227541 34.279235904772385 20.574767983566268 26 19.2027530171307 29.525925314551927 29.277676901067455 21.99364476724992 27 18.644767249917464 29.436282601518656 31.298099849601996 20.620850298961887 28 17.470057958255385 25.91486005649096 36.731961410073 19.88312057518066 29 18.672141520853966 24.564258464473056 35.67935879094677 21.084241223726202 30 21.09226550750156 26.865164520743917 32.757785847914604 19.28478412383992 31 27.046421627966694 25.044431605590407 28.56764241957375 19.341504346869154 32 27.29288177249551 25.373197975129308 28.76393932724405 18.56998092513114 33 26.128351857965594 25.556151645207436 27.99461685191299 20.32087964491398 34 20.411531125050438 26.381644106965997 30.12146472983383 23.085360038149737 35 20.827830967315947 25.85305014489564 31.96535343531052 21.353765452477898 36 28.101867136201903 25.400526393015667 27.44548072337772 19.052125747404716 37 21.050814350170572 30.20954843916217 28.561314698653756 20.178322512013498 38 20.83209530097942 30.43111037746231 27.074254429404643 21.662539892153625 39 20.94599427753934 28.650132056784415 28.100216426396685 22.303657239279556 40 23.59520010271083 25.45697149774403 28.049457099886283 22.898371299658855 41 19.06744066615311 24.926314148417152 29.215179193719965 26.791065991709768 42 21.979246909504422 26.08928505924214 26.654378049227834 25.2770899820256 43 21.886577895161587 25.570366090752355 28.01401269212428 24.529043321961776 44 20.67894611349547 27.53604049741389 29.582783096731596 22.202230292359047 45 19.800768497120426 31.401406771578444 26.067596566523605 22.73022816477752 46 22.219058361762226 29.111872271743515 28.77819962583911 19.89086974065515 47 21.634707090715676 26.698488683467225 28.745002017534205 22.921802208282894 48 22.08507574923884 25.51483804702689 30.714573933458055 21.68551227027622 49 21.23959135761711 24.755694948827998 32.14097061736547 21.86374307618943 50 20.60283005025494 28.810480173141116 29.62074942225157 20.965940354352373 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 576.0 1 1826.0 2 3076.0 3 18040.5 4 33005.0 5 23613.0 6 14221.0 7 14037.5 8 13854.0 9 13948.5 10 14043.0 11 13556.5 12 13070.0 13 12362.0 14 11654.0 15 10628.0 16 9602.0 17 9227.5 18 8853.0 19 8442.0 20 8031.0 21 8185.5 22 8340.0 23 9220.5 24 10101.0 25 12485.0 26 14869.0 27 17921.0 28 20973.0 29 26269.5 30 31566.0 31 36192.0 32 40818.0 33 48365.5 34 55913.0 35 61498.0 36 67083.0 37 73299.0 38 79515.0 39 92425.5 40 105336.0 41 129172.5 42 153009.0 43 167080.5 44 181152.0 45 182590.5 46 184029.0 47 177387.5 48 170746.0 49 172268.5 50 173791.0 51 163712.5 52 153634.0 53 137697.5 54 121761.0 55 113570.5 56 105380.0 57 99244.0 58 93108.0 59 86396.5 60 79685.0 61 71697.5 62 63710.0 63 56227.0 64 48744.0 65 40817.5 66 32891.0 67 26018.0 68 19145.0 69 16422.5 70 13700.0 71 11856.5 72 10013.0 73 7749.0 74 5485.0 75 4376.0 76 3267.0 77 2466.5 78 1666.0 79 1262.5 80 859.0 81 580.0 82 301.0 83 231.5 84 162.0 85 117.0 86 72.0 87 52.5 88 33.0 89 29.5 90 26.0 91 16.0 92 6.0 93 5.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2180880.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.9675641759856 #Duplication Level Percentage of deduplicated Percentage of total 1 78.50154417863972 14.889830771223176 2 7.326642503866387 2.7793712377317905 3 2.694982635324011 1.533517682660249 4 1.482943322694547 1.1251129057023257 5 0.9748621140888776 0.9245379855858888 6 0.6836370322883553 0.7780157569805829 7 0.5601795201619109 0.7437668699120704 8 0.45085651732691057 0.6841319941247631 9 0.3889534710938575 0.663974993200059 >10 4.1469233951150954 18.718668741221343 >50 1.5831577683311844 21.6811795047467 >100 1.1994415262772133 33.78481716318973 >500 0.0046518450436586435 0.5742651256996236 >1k 9.793357986649775E-4 0.2988352000547532 >5k 0.0 0.0 >10k+ 2.4483394966624437E-4 0.8199740679668652 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17657 0.8096273064084223 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2864 0.1313231356149811 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.032005429001137155 0.0 2 0.0 0.0 0.0 0.12857195260628737 0.0 3 0.0 0.0 0.0 0.18630094273871098 0.0 4 0.0 0.0 0.0 0.2686988738490884 0.0 5 0.0 0.0 0.0 0.47366200799677194 0.0 6 0.0 0.0 0.0 0.6588624775320054 0.0 7 0.0 0.0 0.0 0.7856003081324969 0.0 8 0.0 0.0 0.0 1.1149627673232823 0.0 9 0.0 0.0 0.0 1.2471112578408716 0.0 10 0.0 0.0 0.0 1.4882065955027328 0.0 11 0.0 0.0 0.0 1.7097685338028685 0.0 12 0.0 0.0 0.0 1.908082975679542 0.0 13 0.0 0.0 0.0 1.9783757015516672 0.0 14 0.0 0.0 0.0 2.007446535343531 0.0 15 0.0 0.0 0.0 2.0533912915887167 0.0 16 0.0 0.0 0.0 2.1649059095411025 0.0 17 0.0 0.0 0.0 2.298384138512894 0.0 18 0.0 0.0 0.0 2.491333773522615 0.0 19 0.0 0.0 0.0 2.5728146436300943 0.0 20 0.0 0.0 0.0 2.67804739371263 0.0 21 0.0 0.0 0.0 2.801071127251385 0.0 22 0.0 0.0 0.0 2.934365944022596 0.0 23 0.0 0.0 0.0 3.0840761527456806 0.0 24 0.0 9.170610028979128E-5 0.0 3.196828803051979 0.0 25 0.0 9.170610028979128E-5 0.0 3.29096511499945 0.0 26 0.0 9.170610028979128E-5 0.0 3.3851014269469206 0.0 27 4.585305014489564E-5 9.170610028979128E-5 0.0 3.4836396317083014 0.0 28 4.585305014489564E-5 9.170610028979128E-5 0.0 3.594328894758079 0.0 29 4.585305014489564E-5 9.170610028979128E-5 0.0 3.713134147683504 0.0 30 4.585305014489564E-5 9.170610028979128E-5 0.0 3.8569751659880414 0.0 31 4.585305014489564E-5 9.170610028979128E-5 0.0 3.9889402443050512 0.0 32 4.585305014489564E-5 9.170610028979128E-5 0.0 4.106828436227578 0.0 33 4.585305014489564E-5 9.170610028979128E-5 0.0 4.232511646674737 0.0 34 4.585305014489564E-5 9.170610028979128E-5 0.0 4.362963574336965 0.0 35 4.585305014489564E-5 9.170610028979128E-5 0.0 4.5282179670591685 0.0 36 4.585305014489564E-5 9.170610028979128E-5 0.0 4.658761600821687 0.0 37 4.585305014489564E-5 9.170610028979128E-5 0.0 4.791185209640145 0.0 38 4.585305014489564E-5 9.170610028979128E-5 0.0 4.945755841678588 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 25 4.4441593E-5 44.0 14 CGGATAT 20 7.8580395E-4 44.0 6 TTAACGC 20 7.8580395E-4 44.0 40 TCGAGTA 20 7.8580395E-4 44.0 43 CGTTTTT 11670 0.0 43.132816 1 TCACGAC 495 0.0 43.11111 25 ACGGTCT 530 0.0 40.67925 30 CACGACG 535 0.0 39.88785 26 CGTAGAC 50 1.3496901E-9 39.6 29 CGGTCTA 540 0.0 39.518517 31 CTATCGT 45 2.3526809E-8 39.111107 19 TCCGATT 40 4.126814E-7 38.5 39 TACGTTG 40 4.126814E-7 38.5 1 CGTAAGG 395 0.0 38.430378 2 TTAGGGA 2985 0.0 37.956448 4 CGTTAGG 390 0.0 37.794872 2 AATGGGC 495 0.0 37.77778 4 TCTCACG 565 0.0 37.769913 23 CGTTACA 35 7.2932144E-6 37.714287 41 TAGGGAC 2625 0.0 37.714287 5 >>END_MODULE