##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545947_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1709622 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4808922674135 31.0 31.0 33.0 30.0 34.0 2 31.87544849095297 31.0 31.0 34.0 30.0 34.0 3 31.91726533701602 31.0 31.0 34.0 30.0 34.0 4 35.689300909791754 37.0 35.0 37.0 33.0 37.0 5 35.621327404537375 37.0 35.0 37.0 33.0 37.0 6 35.67698532190157 37.0 35.0 37.0 33.0 37.0 7 35.97928489455564 37.0 35.0 37.0 35.0 37.0 8 35.97097194584534 37.0 35.0 37.0 35.0 37.0 9 37.780060153648 39.0 38.0 39.0 35.0 39.0 10 37.2692513315809 39.0 37.0 39.0 34.0 39.0 11 36.90619739334192 39.0 37.0 39.0 33.0 39.0 12 36.163129042560286 38.0 35.0 39.0 32.0 39.0 13 35.83110477052822 38.0 35.0 39.0 31.0 39.0 14 36.806349590728246 39.0 35.0 41.0 31.0 41.0 15 37.038827296326325 39.0 35.0 41.0 32.0 41.0 16 37.22669397094796 39.0 35.0 41.0 32.0 41.0 17 37.14529586072243 39.0 35.0 41.0 32.0 41.0 18 37.02084554363479 38.0 35.0 40.0 32.0 41.0 19 36.863823114115284 38.0 35.0 40.0 32.0 41.0 20 36.616425151290755 38.0 35.0 40.0 32.0 41.0 21 36.48113852067884 38.0 35.0 40.0 31.0 41.0 22 36.392355737116155 37.0 35.0 40.0 31.0 41.0 23 36.34304717651036 37.0 35.0 40.0 31.0 41.0 24 36.377949043706735 37.0 35.0 40.0 31.0 41.0 25 36.33687797653516 37.0 35.0 40.0 31.0 41.0 26 36.10328306491142 37.0 35.0 40.0 31.0 41.0 27 36.07932221274644 37.0 35.0 40.0 31.0 41.0 28 36.0804084177672 37.0 35.0 40.0 31.0 41.0 29 36.02966328229281 37.0 35.0 40.0 31.0 41.0 30 35.90756202248216 37.0 35.0 40.0 30.0 41.0 31 35.653627527020596 37.0 35.0 40.0 30.0 41.0 32 35.36636110204478 37.0 34.0 40.0 29.0 41.0 33 35.06866605600536 37.0 34.0 40.0 27.0 41.0 34 34.77187881297737 37.0 34.0 40.0 24.0 41.0 35 34.49827388744413 36.0 34.0 40.0 23.0 41.0 36 34.285881908398466 36.0 34.0 40.0 23.0 41.0 37 34.20063089969596 36.0 33.0 40.0 23.0 41.0 38 34.12488901055321 36.0 33.0 40.0 23.0 41.0 39 34.028393995865756 36.0 33.0 40.0 22.0 41.0 40 33.88007992410018 36.0 33.0 40.0 21.0 41.0 41 33.845177471979184 36.0 33.0 40.0 21.0 41.0 42 33.799379044022594 36.0 33.0 40.0 20.0 41.0 43 33.70713058208189 35.0 33.0 40.0 20.0 41.0 44 33.580441758470585 35.0 33.0 40.0 19.0 41.0 45 33.474085499601664 35.0 33.0 40.0 20.0 41.0 46 33.452094088634794 35.0 33.0 40.0 20.0 41.0 47 33.39184860746995 35.0 33.0 40.0 20.0 41.0 48 33.29611165509101 35.0 33.0 40.0 18.0 41.0 49 33.25955386629325 35.0 33.0 40.0 18.0 41.0 50 33.073484665031216 35.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 14.0 15 50.0 16 135.0 17 343.0 18 855.0 19 1700.0 20 2962.0 21 4825.0 22 7529.0 23 11030.0 24 16163.0 25 25038.0 26 36143.0 27 43797.0 28 44037.0 29 42910.0 30 45810.0 31 52244.0 32 63912.0 33 82700.0 34 147864.0 35 250509.0 36 107676.0 37 136635.0 38 209739.0 39 374995.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.23063343826881 21.814939208784164 29.273839480306172 16.680587872640853 2 34.719721669468456 24.674869649548263 28.40703968479582 12.198368996187462 3 27.342067427770584 23.831993271027162 36.3979288989028 12.428010402299455 4 24.01238402407082 27.073411549453624 35.444911214291814 13.469293212183747 5 21.91244614306554 31.237080477438873 34.11906257640578 12.731410803089807 6 19.503258615062276 40.331663958465676 30.421286108859153 9.7437913176129 7 84.88993473411082 3.333660891120961 10.695814630368584 1.0805897443996393 8 86.51105332055859 2.2003109459283983 10.127794331144544 1.1608414023684768 9 83.15048589688246 3.7136864172314112 11.172762166139648 1.9630655197464701 10 47.98657247040573 27.722092953881035 15.69446345449462 8.596871121218609 11 41.1137081764273 19.404581831539367 27.507952050219288 11.973757941814037 12 37.715939546870594 20.11409539652625 28.799056165631935 13.37090889097122 13 21.174505241509525 35.09389794937127 29.585955257945905 14.145641551173298 14 15.758629685392444 36.8827144245921 31.897109419509107 15.461546470506345 15 14.183369189212586 22.883128551223603 47.91439277220345 15.019109487360364 16 16.90110445466893 18.757070276353485 46.30883318066801 18.03299208830958 17 17.749069677390676 18.36084233824787 32.10698037343928 31.78310761092218 18 21.758143028107966 21.87466001256418 37.30894899574292 19.058247963584932 19 26.96713074586078 23.040590259133307 29.5802814891245 20.411997505881416 20 29.033259983785893 22.293407548569217 29.7439433980143 18.9293890696306 21 21.987725941757887 26.290022004864234 32.37066439247974 19.35158766089814 22 22.026389459190394 21.547336194784577 30.895016559216014 25.531257786809014 23 19.088898013712974 26.80393677666759 30.79347364505136 23.313691564568074 24 19.388437912006278 22.448471065533784 40.81580606707214 17.3472849553878 25 17.63846043160418 24.03823769230859 37.78542859181737 20.537873284269857 26 16.94017741933597 31.444845702734288 31.110034849808905 20.504942028120837 27 17.57827168812755 30.592961485053422 33.18423604750056 18.64453077931847 28 15.431364360074918 26.49293235580731 40.446718631369976 17.6289846527478 29 16.290852597825715 22.89038161652108 39.907710593335835 20.911055192317367 30 19.312865651003555 27.469756472483393 35.061902572615466 18.155475303897585 31 27.84165154636522 24.39825879638891 28.933179381173147 18.826910276072724 32 27.419511447559753 25.0326095476076 29.943285708770713 17.60459329606194 33 26.128933764305796 26.314179391701792 28.210505012219073 19.34638183177334 34 19.640949870790152 26.297859994782474 30.979128719681892 23.082061414745482 35 19.57034946906392 25.419186229470608 32.72208710463483 22.288377196830645 36 28.791861592796536 24.056662817862662 29.09420912926951 18.057266460071293 37 19.65990142850291 30.25388068239646 30.426140983211493 19.660076905889138 38 20.331628862988428 30.95526379515472 27.225140996079833 21.48796634577702 39 20.68626866055771 29.40638339937132 28.982839481476024 20.92450845859494 40 23.425880106830633 25.54827909327325 28.06977214846323 22.95606865143289 41 19.255133590934136 23.305385634953225 29.27582822401677 28.16365255009587 42 22.133840112024764 24.483599298558396 26.76357697783487 26.618983611581974 43 21.9470151881527 26.03411748327993 27.037087730504172 24.9817795980632 44 20.05770866308459 28.469509634293427 29.53032892651124 21.942452776110745 45 18.537489573718634 34.304542173650084 25.63958582657453 21.518382426056753 46 22.61529156737571 30.15391706470787 27.32399325698897 19.906798110927447 47 21.575412576581257 26.607109641780465 28.422774157094377 23.394703624543904 48 22.371085538206692 24.088892164466767 31.987948213113775 21.552074084212766 49 21.71830966143393 23.432840709817725 33.023030822017965 21.825818806730375 50 19.853043538279223 30.139995858733688 29.612276865880293 20.3946837371068 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 523.0 1 1381.0 2 2239.0 3 16712.5 4 31186.0 5 23017.0 6 14848.0 7 15029.0 8 15210.0 9 15609.5 10 16009.0 11 15773.5 12 15538.0 13 14436.0 14 13334.0 15 12284.5 16 11235.0 17 10550.5 18 9866.0 19 9291.5 20 8717.0 21 8296.5 22 7876.0 23 8214.5 24 8553.0 25 8786.0 26 9019.0 27 11316.5 28 13614.0 29 16657.0 30 19700.0 31 24968.0 32 30236.0 33 34563.5 34 38891.0 35 41986.5 36 45082.0 37 49609.5 38 54137.0 39 67948.0 40 81759.0 41 104424.0 42 127089.0 43 147174.5 44 167260.0 45 167198.0 46 167136.0 47 156779.0 48 146422.0 49 137384.0 50 128346.0 51 119205.5 52 110065.0 53 100988.5 54 91912.0 55 83912.0 56 75912.0 57 67901.0 58 59890.0 59 55831.0 60 51772.0 61 46634.0 62 41496.0 63 36147.0 64 30798.0 65 26779.5 66 22761.0 67 19590.5 68 16420.0 69 13449.0 70 10478.0 71 7835.5 72 5193.0 73 4722.5 74 4252.0 75 3322.0 76 2392.0 77 1758.5 78 1125.0 79 931.0 80 737.0 81 540.5 82 344.0 83 249.5 84 155.0 85 104.0 86 53.0 87 42.0 88 31.0 89 18.0 90 5.0 91 5.5 92 6.0 93 3.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1709622.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.060945139129306 #Duplication Level Percentage of deduplicated Percentage of total 1 79.73108454398768 15.994809129202173 2 7.1744893600573025 2.8785407490675285 3 2.506217508956032 1.508312758616768 4 1.3311748246461381 1.0681850051126498 5 0.874078149739143 0.8767416904614297 6 0.6497762932277379 0.7821075942689066 7 0.5130980583257049 0.7205262399346013 8 0.40996348653919756 0.6579404010007214 9 0.35198281217429184 0.635499709645043 >10 3.9391134742507923 18.764715334345937 >50 1.3966040792465093 20.157574830964766 >100 1.1188757288846585 34.38337357138082 >500 0.0026562599735938646 0.3158147940221171 >1k 5.902799941319699E-4 0.24050237969963248 >5k 0.0 0.0 >10k+ 2.9513999706598493E-4 1.0153558122769566 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17149 1.003087232148393 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2704 0.15816361745461863 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.025678190851544963 0.0 2 0.0 0.0 0.0 0.11458673320769153 0.0 3 0.0 0.0 0.0 0.16892623047667846 0.0 4 0.0 0.0 0.0 0.2579517577569779 0.0 5 0.0 0.0 0.0 0.4719756764945701 0.0 6 0.0 0.0 0.0 0.6319525602735575 0.0 7 0.0 0.0 0.0 0.7453109517776444 0.0 8 0.0 0.0 0.0 1.0113931617632437 0.0 9 0.0 0.0 0.0 1.1152757744109516 0.0 10 0.0 0.0 0.0 1.392588537115222 0.0 11 0.0 0.0 0.0 1.5892986870781962 0.0 12 0.0 0.0 0.0 1.7924430078695759 0.0 13 0.0 0.0 0.0 1.8643302437614864 0.0 14 0.0 0.0 0.0 1.8901254195371842 0.0 15 0.0 0.0 0.0 1.9391421027572178 0.0 16 0.0 0.0 0.0 2.0445455194189126 0.0 17 0.0 0.0 0.0 2.1720005942834146 0.0 18 0.0 0.0 0.0 2.372805216591738 0.0 19 0.0 0.0 0.0 2.4634685328101766 0.0 20 0.0 0.0 0.0 2.5616188841743965 0.0 21 0.0 0.0 0.0 2.6894834062734336 0.0 22 0.0 0.0 0.0 2.8226707424214244 0.0 23 0.0 0.0 0.0 2.9728793850336506 0.0 24 0.0 0.0 0.0 3.088577475020794 0.0 25 0.0 0.0 0.0 3.1809955651015254 0.0 26 0.0 0.0 0.0 3.273179685333951 0.0 27 0.0 0.0 0.0 3.372382901015546 0.0 28 0.0 0.0 0.0 3.473808830256045 0.0 29 0.0 0.0 0.0 3.588161593615431 0.0 30 0.0 0.0 0.0 3.7361475226687535 0.0 31 0.0 0.0 0.0 3.8698027985133554 0.0 32 0.0 0.0 0.0 3.9870801849765622 0.0 33 0.0 0.0 0.0 4.106112345302061 0.0 34 0.0 0.0 0.0 4.236901490504919 0.0 35 5.849246207641221E-5 0.0 0.0 4.399393550153191 0.0 36 5.849246207641221E-5 0.0 0.0 4.531995961680418 0.0 37 5.849246207641221E-5 0.0 0.0 4.668575860628841 0.0 38 5.849246207641221E-5 0.0 0.0 4.82200158865527 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 75 0.0 44.000004 1 TTTAGCG 50 2.7284841E-11 44.0 1 CGCGAGT 30 2.5284444E-6 44.0 15 GCGTTAA 25 4.4437533E-5 44.0 9 ATCGTTC 20 7.85756E-4 44.0 33 TACGCTA 40 8.3164196E-9 44.0 25 TCTACGA 25 4.4437533E-5 44.0 15 TTACGTG 25 4.4437533E-5 44.0 26 ACGTAAG 90 0.0 44.0 1 ACGTAAC 25 4.4437533E-5 44.0 21 TTCGATC 20 7.85756E-4 44.0 18 TCGGTAC 45 4.802132E-10 44.0 36 TATAGCG 85 0.0 43.999996 1 CGTTTTT 13140 0.0 43.112633 1 TTGCGAG 75 0.0 41.06667 1 GCGTAAG 145 0.0 40.96552 1 TGGATCG 65 0.0 40.615387 34 GCGTTAG 60 3.6379788E-12 40.333332 1 TACGATG 50 1.3478711E-9 39.600002 1 ATTAACG 90 0.0 39.11111 1 >>END_MODULE