##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545946_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1354712 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46073999492143 31.0 31.0 33.0 30.0 34.0 2 31.847607461955015 31.0 31.0 34.0 30.0 34.0 3 31.899078918618866 31.0 31.0 34.0 30.0 34.0 4 35.66402748333225 37.0 35.0 37.0 33.0 37.0 5 35.593106874376254 37.0 35.0 37.0 33.0 37.0 6 35.640519165697214 37.0 35.0 37.0 33.0 37.0 7 35.94771656263472 37.0 35.0 37.0 35.0 37.0 8 35.94558991136123 37.0 35.0 37.0 35.0 37.0 9 37.76166963900814 39.0 38.0 39.0 35.0 39.0 10 37.258140475614006 39.0 37.0 39.0 34.0 39.0 11 36.85816690189502 39.0 35.0 39.0 33.0 39.0 12 35.67358449618812 37.0 35.0 39.0 32.0 39.0 13 35.15177764720472 37.0 35.0 39.0 30.0 39.0 14 35.91504393553759 38.0 35.0 41.0 30.0 41.0 15 36.30505302972145 38.0 35.0 41.0 31.0 41.0 16 36.58474199682294 38.0 35.0 41.0 32.0 41.0 17 36.56184266471398 37.0 35.0 41.0 32.0 41.0 18 36.47586719538913 37.0 35.0 40.0 32.0 41.0 19 36.30532836499566 37.0 35.0 40.0 31.0 41.0 20 36.035302706405496 36.0 35.0 40.0 31.0 41.0 21 35.83094340346878 35.0 35.0 40.0 31.0 41.0 22 35.723752354744036 35.0 35.0 40.0 31.0 41.0 23 35.71833939612257 35.0 34.0 40.0 31.0 41.0 24 35.71568052840751 35.0 35.0 40.0 31.0 41.0 25 35.657792947873794 35.0 35.0 40.0 31.0 41.0 26 35.40005920077478 35.0 34.0 40.0 30.0 41.0 27 35.36237222376417 35.0 34.0 40.0 30.0 41.0 28 35.36303214262515 35.0 34.0 40.0 30.0 41.0 29 35.35024639923467 35.0 34.0 40.0 30.0 41.0 30 35.244958338008374 36.0 34.0 40.0 30.0 41.0 31 34.93622925020226 35.0 34.0 40.0 29.0 41.0 32 34.62459179515646 35.0 34.0 40.0 27.0 41.0 33 34.37356500865128 35.0 34.0 40.0 25.0 41.0 34 34.11763607320228 35.0 34.0 40.0 23.0 41.0 35 33.87140883080684 35.0 33.0 40.0 23.0 41.0 36 33.63935581880134 35.0 33.0 40.0 22.0 41.0 37 33.509272819610366 35.0 33.0 40.0 22.0 41.0 38 33.4297444770549 35.0 33.0 40.0 22.0 41.0 39 33.36043454254484 35.0 33.0 39.0 21.0 41.0 40 33.18431592840397 35.0 33.0 39.0 20.0 41.0 41 33.15535257678385 35.0 33.0 39.0 20.0 41.0 42 33.11381976390554 35.0 33.0 39.0 20.0 41.0 43 32.99925740674033 35.0 33.0 39.0 19.0 41.0 44 32.86681449636528 35.0 32.0 39.0 18.0 41.0 45 32.743352092548086 35.0 32.0 39.0 18.0 41.0 46 32.74546693319318 35.0 32.0 39.0 18.0 41.0 47 32.69139861461329 35.0 32.0 38.0 18.0 41.0 48 32.609232811106715 35.0 32.0 38.0 18.0 41.0 49 32.60438454815488 35.0 32.0 38.0 18.0 40.0 50 32.38771192696307 35.0 32.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 2.0 13 5.0 14 16.0 15 57.0 16 142.0 17 354.0 18 797.0 19 1732.0 20 2947.0 21 4630.0 22 6880.0 23 9948.0 24 14635.0 25 21751.0 26 30488.0 27 36981.0 28 37837.0 29 37183.0 30 40618.0 31 46424.0 32 56985.0 33 75156.0 34 143760.0 35 254907.0 36 78925.0 37 94465.0 38 138037.0 39 219049.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.828536249771165 21.874317198046523 29.206724381270703 17.090422170911605 2 33.35173822923249 23.63875126226091 30.018336000566908 12.991174507939697 3 27.74515911869091 23.377884007818636 35.90135763173279 12.975599241757656 4 24.025623158280133 26.70715251654964 34.98581248265314 14.28141184251708 5 21.240676985218997 31.41228541564554 33.72237051122305 13.624667087912412 6 19.60158321473494 39.78727581950998 30.79008674906548 9.8210542166896 7 85.19714891430799 3.195660775131541 10.273475100242708 1.333715210317765 8 87.05909447912175 1.991862477043091 9.598792953779107 1.3502500900560415 9 84.58705614182203 2.8305647251962043 10.816321107364518 1.766058025617253 10 58.731302298938814 17.27555377083838 14.99971949757587 8.99342443264694 11 53.53329711407295 16.348936157648268 19.301814703051274 10.815952025227501 12 45.774526246168925 19.005367930600748 23.746227980559706 11.47387784267062 13 21.70188202363307 41.39809789829868 25.07307826312899 11.826941814939264 14 13.911739174082758 43.42561370977743 30.844637088916315 11.818010027223497 15 12.71797991012112 19.739546117551185 54.49165579104637 13.050818181281334 16 14.728813209006786 14.060553091727247 52.3100112791501 18.900622420115862 17 16.458332103059544 14.059372028888797 31.216155168035716 38.266140700015946 18 23.15975646484271 19.57028504951606 37.22178588511802 20.048172600523213 19 29.584590673146767 22.044537879637886 27.828940763793337 20.54193068342201 20 32.303840225819215 21.213438723507284 25.93842824157459 20.544292809098906 21 22.087499040386444 25.44341527940994 31.229146859258645 21.239938820944968 22 22.411479340258296 21.530996994195075 29.053481477982036 27.004042187564593 23 18.989349765854293 27.10871388162207 27.65037882590543 26.251557526618203 24 20.260690095016507 21.67973709541216 41.15841595852107 16.90115685105026 25 17.618357259698 21.057464612404704 40.11443022576016 21.20974790213713 26 15.81029768688843 32.129264375011076 30.26835224018094 21.792085697919557 27 16.775226025900707 30.95041602938484 33.48527214640455 18.789085798309898 28 13.960162750459137 25.154940681118937 43.803627634508295 17.08126893391363 29 14.701132048730653 22.862571528118153 42.21074294757853 20.22555347557267 30 19.4563124856058 26.45588139766976 35.347808242637555 18.739997874086892 31 31.422324449772347 23.40460555453853 26.667808360743834 18.50526163494529 32 31.23726666627298 24.42821795333621 28.034076615546333 16.300438764844483 33 28.5808348933205 25.321544357767557 26.839874453020272 19.25774629589167 34 18.460233614229445 26.526818984404066 30.623630705271676 24.389316696094816 35 19.449964272849137 24.610913611158683 32.1738494971625 23.765272618829687 36 31.994770844282773 21.43156626648321 27.188214173935126 19.385448715298896 37 20.141845646897643 30.141683250757357 29.899196286738437 19.817274815606563 38 20.781760256054422 32.122030365125575 23.612841696242448 23.48336768257755 39 20.169010092181956 29.65095164138208 27.158613786546514 23.02142447988945 40 23.843370399022078 24.087628957298673 25.557166394037996 26.511834249641254 41 18.102150124897396 21.367050708932968 28.50140841743485 32.029390748734784 42 23.299121879779612 23.78106933429393 24.45434896863688 28.465459817289577 43 23.67211628744707 24.52631998535482 25.909566018460012 25.891997708738096 44 20.70004547091928 29.283419649342445 28.28734077796609 21.729194101772183 45 18.198923461222755 36.09925947360029 23.094576559445844 22.607240505731106 46 23.701273776271268 30.07266489113553 26.47728816161664 19.74877317097656 47 21.836227921506563 27.107828084493235 27.404201040516362 23.65174295348384 48 23.820487306527145 23.229512988738566 30.774659115738253 22.175340588996036 49 21.48146617140765 21.813713911148643 32.605897046752375 24.098922870691336 50 19.633545727800445 30.99780617577758 28.02233980358925 21.34630829283272 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 337.0 1 925.0 2 1513.0 3 11689.0 4 21865.0 5 15968.5 6 10072.0 7 10493.0 8 10914.0 9 11568.5 10 12223.0 11 12130.0 12 12037.0 13 11259.5 14 10482.0 15 9389.0 16 8296.0 17 7383.0 18 6470.0 19 6213.0 20 5956.0 21 5521.5 22 5087.0 23 4678.0 24 4269.0 25 4454.0 26 4639.0 27 5954.0 28 7269.0 29 7957.5 30 8646.0 31 9960.5 32 11275.0 33 12928.0 34 14581.0 35 16917.5 36 19254.0 37 22588.5 38 25923.0 39 38142.5 40 50362.0 41 79044.0 42 107726.0 43 127871.5 44 148017.0 45 147917.0 46 147817.0 47 133887.0 48 119957.0 49 117112.0 50 114267.0 51 105838.5 52 97410.0 53 87076.0 54 76742.0 55 69590.5 56 62439.0 57 58953.0 58 55467.0 59 50397.5 60 45328.0 61 40239.0 62 35150.0 63 33018.0 64 30886.0 65 26017.0 66 21148.0 67 17881.5 68 14615.0 69 12619.0 70 10623.0 71 8600.5 72 6578.0 73 5355.0 74 4132.0 75 3269.5 76 2407.0 77 1929.0 78 1451.0 79 987.5 80 524.0 81 433.0 82 342.0 83 226.5 84 111.0 85 80.5 86 50.0 87 42.0 88 34.0 89 25.0 90 16.0 91 10.0 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1354712.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.367341636607925 #Duplication Level Percentage of deduplicated Percentage of total 1 77.40671139182368 17.31382358667231 2 8.134977379741478 3.639156365175104 3 3.39885785927908 2.280702447382952 4 1.9922731958657558 1.7824742082154423 5 1.3253018547140571 1.482173967800972 6 0.9432319372714425 1.2658554590105935 7 0.7310011059252194 1.144538603107732 8 0.5384460872314667 0.9634886068800805 9 0.4067422815650439 0.818796921283684 >10 3.0067279172992043 14.79125181257662 >50 1.0877647115116886 17.708364690291855 >100 1.0232871572361057 35.01126990370627 >500 0.004008960459298883 0.623802826583501 >1k 3.3408003827490695E-4 0.18815710557465926 >5k 0.0 0.0 >10k+ 3.3408003827490695E-4 0.9861434957381963 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13197 0.9741553924376546 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2518 0.18586976420080428 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03993468722503381 0.0 2 0.0 0.0 0.0 0.1500687969103396 0.0 3 0.0 0.0 0.0 0.21015536881639788 0.0 4 0.0 0.0 0.0 0.3172630049781799 0.0 5 0.0 0.0 0.0 0.5449128670890935 0.0 6 0.0 0.0 0.0 0.7517464966723555 0.0 7 0.0 0.0 0.0 0.8996746171880075 0.0 8 0.0 0.0 0.0 1.293337624528313 0.0 9 0.0 0.0 0.0 1.4429635228742346 0.0 10 0.0 0.0 0.0 1.7044951251631344 0.0 11 0.0 0.0 0.0 1.9159053732453835 0.0 12 0.0 0.0 0.0 2.120229244296943 0.0 13 0.0 0.0 0.0 2.2027560101335193 0.0 14 0.0 0.0 0.0 2.2307324361192635 0.0 15 0.0 0.0 0.0 2.2760557225447178 0.0 16 0.0 0.0 0.0 2.3852302186737844 0.0 17 0.0 0.0 0.0 2.51197302452477 0.0 18 0.0 0.0 0.0 2.7245643354454674 0.0 19 0.0 0.0 0.0 2.7963877193086057 0.0 20 0.0 0.0 0.0 2.8830482050797515 0.0 21 0.0 0.0 0.0 3.000859223214971 0.0 22 0.0 0.0 0.0 3.115200869262249 0.0 23 0.0 0.0 0.0 3.2591429026981382 0.0 24 0.0 0.0 0.0 3.35525189117687 0.0 25 0.0 0.0 0.0 3.4304708307005476 0.0 26 0.0 0.0 0.0 3.520674504987038 0.0 27 0.0 0.0 0.0 3.6070397250485713 0.0 28 0.0 0.0 0.0 3.6993102593023464 0.0 29 0.0 0.0 0.0 3.8213288137995383 0.0 30 0.0 0.0 0.0 3.9747193499430136 0.0 31 0.0 0.0 0.0 4.101535972221402 0.0 32 0.0 0.0 0.0 4.2042884391664055 0.0 33 0.0 0.0 0.0 4.317744288084848 0.0 34 0.0 0.0 0.0 4.443306031097385 0.0 35 0.0 0.0 0.0 4.608211929915731 0.0 36 0.0 0.0 0.0 4.73259261008982 0.0 37 0.0 0.0 0.0 4.8490011161043824 0.0 38 0.0 0.0 0.0 4.997150685902244 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAA 25 4.443264E-5 44.0 10 AAGTACG 35 1.446333E-7 44.0 1 GCGAATC 30 2.5280533E-6 44.0 34 TAGACGT 25 4.443264E-5 44.0 24 CTATACG 60 0.0 44.0 1 TGTATCG 20 7.856981E-4 44.0 11 TAAGTCG 20 7.856981E-4 44.0 1 CCTCGCG 25 4.443264E-5 44.0 25 CCGTCCA 20 7.856981E-4 44.0 33 CTCGGTA 25 4.443264E-5 44.0 21 AAGTTCG 20 7.856981E-4 44.0 22 CGTAGGT 20 7.856981E-4 44.0 36 GAACGTA 25 4.443264E-5 44.0 9 ATAACGG 80 0.0 44.0 2 ATACGAG 35 1.446333E-7 44.0 1 CCACGCG 20 7.856981E-4 44.0 28 TATCGTG 20 7.856981E-4 44.0 1 CCGTTGT 20 7.856981E-4 44.0 13 TACACCG 20 7.856981E-4 44.0 35 TACGTTG 45 4.802132E-10 44.0 1 >>END_MODULE