##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545944_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 870220 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.498018891774493 31.0 31.0 33.0 30.0 34.0 2 31.88251246811151 31.0 31.0 34.0 30.0 34.0 3 31.896923766403898 31.0 31.0 34.0 30.0 34.0 4 35.66934913010503 37.0 35.0 37.0 33.0 37.0 5 35.59975063776976 37.0 35.0 37.0 33.0 37.0 6 35.64340166854359 37.0 35.0 37.0 33.0 37.0 7 35.98164027487302 37.0 35.0 37.0 35.0 37.0 8 35.98242628300889 37.0 35.0 37.0 35.0 37.0 9 37.79713405805428 39.0 38.0 39.0 35.0 39.0 10 37.32500861851026 39.0 37.0 39.0 34.0 39.0 11 36.94098733653559 39.0 37.0 39.0 33.0 39.0 12 35.58501528349153 35.0 35.0 39.0 32.0 39.0 13 34.964291788283425 35.0 35.0 39.0 30.0 39.0 14 35.81597641975593 36.0 35.0 40.0 30.0 41.0 15 36.21233940842546 36.0 35.0 41.0 31.0 41.0 16 36.5143515432879 36.0 35.0 41.0 32.0 41.0 17 36.47675760152605 36.0 35.0 40.0 32.0 41.0 18 36.373622762060165 36.0 35.0 40.0 32.0 41.0 19 36.18930155592839 36.0 35.0 40.0 32.0 41.0 20 35.900474592631745 35.0 35.0 40.0 32.0 41.0 21 35.708698949690884 35.0 35.0 40.0 31.0 41.0 22 35.58219645606858 35.0 35.0 40.0 31.0 41.0 23 35.57263335708212 35.0 34.0 40.0 31.0 41.0 24 35.54989198133805 35.0 34.0 40.0 31.0 41.0 25 35.5185194548505 35.0 35.0 40.0 31.0 41.0 26 35.27027188527039 35.0 34.0 40.0 31.0 41.0 27 35.23057962354347 35.0 34.0 40.0 30.0 41.0 28 35.299307071774955 35.0 34.0 40.0 30.0 41.0 29 35.32094183080141 35.0 35.0 40.0 31.0 41.0 30 35.21115809795224 35.0 35.0 40.0 30.0 41.0 31 34.862807106248994 35.0 34.0 40.0 29.0 41.0 32 34.48571395739008 35.0 34.0 40.0 27.0 41.0 33 34.14181126611661 35.0 34.0 40.0 25.0 41.0 34 33.85501942037646 35.0 34.0 40.0 23.0 41.0 35 33.56401025028154 35.0 33.0 40.0 23.0 41.0 36 33.307872721840454 35.0 33.0 39.0 21.0 41.0 37 33.19090230056767 35.0 33.0 39.0 20.0 41.0 38 33.15499873595183 35.0 33.0 39.0 21.0 41.0 39 33.136195444830044 35.0 33.0 39.0 20.0 41.0 40 32.92907310794971 35.0 33.0 39.0 18.0 41.0 41 32.95623175748661 35.0 33.0 39.0 18.0 41.0 42 32.89627680356691 35.0 33.0 39.0 18.0 41.0 43 32.776357702649904 35.0 33.0 39.0 18.0 41.0 44 32.643402817678286 35.0 32.0 39.0 18.0 41.0 45 32.529495989519894 35.0 32.0 38.0 18.0 41.0 46 32.51517892027304 35.0 32.0 38.0 18.0 41.0 47 32.47616349888534 35.0 32.0 38.0 18.0 41.0 48 32.43168164372228 35.0 32.0 38.0 18.0 41.0 49 32.412371584197096 35.0 32.0 38.0 18.0 40.0 50 32.18152076486406 35.0 32.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 5.0 14 5.0 15 16.0 16 87.0 17 197.0 18 458.0 19 1008.0 20 1771.0 21 2848.0 22 4391.0 23 6483.0 24 9786.0 25 14392.0 26 21257.0 27 25573.0 28 25432.0 29 23980.0 30 25451.0 31 29338.0 32 36265.0 33 48542.0 34 97477.0 35 184340.0 36 44066.0 37 50478.0 38 77076.0 39 139495.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.052952127048332 23.177817103720898 27.809174691457333 17.960056077773437 2 33.53680678449128 23.574038748822137 30.212704833260556 12.67644963342603 3 26.694858771345174 23.630806003079684 37.06177748155639 12.612557744018755 4 24.051044563443728 26.1497092689205 35.92666222334582 13.872583944289948 5 21.28300889430259 30.776240490910347 34.62250925053435 13.318241364252717 6 17.94212957642895 40.412999011744155 31.63855117096826 10.006320240858633 7 83.21263588517847 4.025418859598722 11.468364321665787 1.2935809335570316 8 85.61731516168325 2.5640642596125116 10.430695686148331 1.3879248925559053 9 83.28514628484751 3.2866401599595503 11.734733745489647 1.6934798097032935 10 60.23097607501552 16.434235021029163 15.22201282434327 8.112776079612052 11 56.03054400036772 14.846935257750912 20.292684608489807 8.829836133391558 12 49.382455011376436 18.422352968214934 22.706327135666843 9.488864884741789 13 18.642067523155063 48.24262830088943 23.158856381145 9.956447794810508 14 11.500884833720209 48.77065569626072 28.98002803888672 10.748431431132358 15 9.54953919698467 19.486221874928177 60.38254694215256 10.58169198593459 16 10.935625474018064 12.653122198984166 58.44820849900025 17.96304382799752 17 11.577302291374595 13.56898255613523 31.994208361104086 42.85950679138609 18 18.98186665440923 19.6341155110202 40.44437038909701 20.939647445473557 19 28.135528946703133 21.201994897841924 29.617912711728067 21.044563443726876 20 31.50076992025005 19.307991082714715 28.167704718347085 21.023534278688146 21 19.363724115740848 27.161752200592954 32.48856610971938 20.985957573946816 22 21.33012341706695 22.478568637815723 27.87272184045414 28.31858610466319 23 16.033187010181333 29.637792742065226 27.508331226586378 26.82068902116706 24 17.594975983084737 20.24890257636 46.92388131736802 15.23224012318724 25 13.499344993220106 22.03178506584542 43.61862517524304 20.850244765691432 26 13.990714991611316 34.3694697892487 31.316678541058586 20.323136678081404 27 14.06345521822068 35.631909172393186 33.143457976143964 17.16117763324217 28 11.487210130771528 26.68566569373262 46.675668221828964 15.15145595366689 29 11.65452414332008 21.707384339592288 44.83935096872055 21.79874054836708 30 15.957344119877732 29.956792535220977 36.34873939923238 17.737123945668912 31 30.059984831421936 24.157339523338926 27.982579117924207 17.80009652731493 32 30.504814874399578 24.521615223736525 29.96437682425134 15.009193077612556 33 28.50980211900439 26.492151409988278 27.311714279147804 17.68633219185953 34 17.435361173036704 26.595458619659397 31.059157454436807 24.910022752867093 35 18.445220748776173 24.410493898094735 33.73089563558641 23.41338971754269 36 33.628737560616855 21.098342947760337 28.47567281836777 16.79724667325504 37 19.381190963204705 31.28875456781044 31.56718990600078 17.762864562984074 38 19.097469605387143 32.18151731745995 26.13626439291214 22.584748684240765 39 18.71699110569741 30.980441727379283 29.835099170324746 20.46746799659856 40 23.264346946749097 24.989083220335086 26.431132357334924 25.315437475580886 41 15.292684608489807 22.134287881225436 29.82119464043575 32.751832869849004 42 22.177725172944772 23.762267012939255 25.69327296545701 28.366734848658957 43 23.102778607708395 24.98287789294661 26.192571993289054 25.72177150605594 44 18.215968375813013 30.999402449955184 29.252602790099058 21.53202638413275 45 16.37792742065225 39.764427386178205 22.144170439658936 21.713474753510607 46 22.28516926754154 32.41927328721473 26.79540805773253 18.500149387511204 47 22.081197858012917 26.318746983521407 27.719772011675207 23.880283146790468 48 24.070464939900255 21.829192617958675 32.15324860380134 21.94709383833973 49 20.90770150076992 20.593642986830915 34.99344993220105 23.505205580198112 50 19.219737537634163 33.212406058238145 26.807588885569167 20.760267518558525 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 401.0 1 627.5 2 854.0 3 6784.0 4 12714.0 5 9841.5 6 6969.0 7 7714.5 8 8460.0 9 9352.5 10 10245.0 11 10201.0 12 10157.0 13 9505.5 14 8854.0 15 7939.0 16 7024.0 17 6369.5 18 5715.0 19 5057.0 20 4399.0 21 3883.0 22 3367.0 23 3369.5 24 3372.0 25 3439.0 26 3506.0 27 3903.0 28 4300.0 29 4872.0 30 5444.0 31 7222.5 32 9001.0 33 11277.5 34 13554.0 35 14854.0 36 16154.0 37 16965.0 38 17776.0 39 28137.0 40 38498.0 41 56851.0 42 75204.0 43 89126.0 44 103048.0 45 106846.0 46 110644.0 47 96423.0 48 82202.0 49 77720.5 50 73239.0 51 68436.0 52 63633.0 53 54185.5 54 44738.0 55 39720.5 56 34703.0 57 30222.0 58 25741.0 59 23011.5 60 20282.0 61 17701.5 62 15121.0 63 12771.5 64 10422.0 65 9026.0 66 7630.0 67 6328.5 68 5027.0 69 4007.0 70 2987.0 71 2757.0 72 2527.0 73 1845.5 74 1164.0 75 857.5 76 551.0 77 428.5 78 306.0 79 218.5 80 131.0 81 113.0 82 95.0 83 55.0 84 15.0 85 9.5 86 4.0 87 5.5 88 7.0 89 18.0 90 29.0 91 17.0 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 870220.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.594222498786223 #Duplication Level Percentage of deduplicated Percentage of total 1 81.92262747160237 16.052101903637535 2 6.790620773952533 2.661138686994117 3 2.2240911661579994 1.3073801150185427 4 1.0639870882030722 0.8339199896834673 5 0.7071941120673982 0.692845939084008 6 0.47534964404749613 0.5588464014111284 7 0.3665325670757828 0.5027344470633922 8 0.318600271546189 0.49941796870797894 9 0.26898597202792845 0.47435138864707654 >10 3.0269782667790803 14.569219021495158 >50 1.451541459199131 20.823289498106725 >100 1.3793490180975028 39.37331993878983 >500 0.002958706602525746 0.3393771937712404 >1k 5.917413205051491E-4 0.41427902744948475 >5k 5.917413205051491E-4 0.8977784801403192 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7743 0.8897749994254326 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3573 0.41058582887086026 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05515846567534646 0.0 2 0.0 0.0 0.0 0.22120843005217072 0.0 3 0.0 0.0 0.0 0.30532509020707405 0.0 4 0.0 0.0 0.0 0.4446002160373239 0.0 5 0.0 0.0 0.0 0.7295856220266139 0.0 6 0.0 0.0 0.0 0.9773390636850452 0.0 7 0.0 0.0 0.0 1.1343108639194686 0.0 8 0.0 0.0 0.0 1.5384615384615385 0.0 9 0.0 0.0 0.0 1.6863551745535612 0.0 10 0.0 0.0 0.0 2.0197191514789363 0.0 11 0.0 0.0 0.0 2.2679322470179955 0.0 12 0.0 0.0 0.0 2.5151111213256416 0.0 13 0.0 0.0 0.0 2.6126726574889108 0.0 14 0.0 0.0 0.0 2.6463423042449037 0.0 15 0.0 0.0 0.0 2.7071315299579415 0.0 16 0.0 0.0 0.0 2.8511181080646275 0.0 17 0.0 0.0 0.0 3.0045275907241846 0.0 18 0.0 0.0 0.0 3.292615660407713 0.0 19 0.0 0.0 0.0 3.382822734480936 0.0 20 0.0 0.0 0.0 3.4727999816138446 0.0 21 0.0 0.0 0.0 3.601847808600124 0.0 22 0.0 0.0 0.0 3.7151524901748982 0.0 23 0.0 0.0 0.0 3.866148789961159 0.0 24 0.0 0.0 0.0 3.9714095286249456 0.0 25 0.0 0.0 0.0 4.050584909563099 0.0 26 0.0 0.0 0.0 4.137114752591299 0.0 27 0.0 0.0 0.0 4.215945393118981 0.0 28 0.0 0.0 0.0 4.291788283422583 0.0 29 0.0 0.0 0.0 4.388430511824596 0.0 30 0.0 0.0 0.0 4.527360897244375 0.0 31 0.0 0.0 0.0 4.657902599342695 0.0 32 0.0 0.0 0.0 4.754544827744708 0.0 33 0.0 0.0 0.0 4.847394911631541 0.0 34 0.0 0.0 0.0 4.945531015145596 0.0 35 0.0 0.0 0.0 5.1106616717611635 0.0 36 0.0 0.0 0.0 5.218105766357932 0.0 37 1.149134701569718E-4 0.0 0.0 5.332099928753649 0.0 38 1.149134701569718E-4 0.0 0.0 5.43827997517869 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 40 8.309144E-9 44.000004 1 TTGGCTA 20 7.855426E-4 44.000004 42 GATCGGT 20 7.855426E-4 44.000004 9 TTTACGG 40 8.309144E-9 44.000004 2 ACGTTAG 20 7.855426E-4 44.000004 1 ACCGCTT 20 7.855426E-4 44.000004 19 ATAATGC 20 7.855426E-4 44.000004 32 TAGGTGA 20 7.855426E-4 44.000004 16 TAGGTCG 20 7.855426E-4 44.000004 1 GACGTGA 20 7.855426E-4 44.000004 16 GAACTCA 20 7.855426E-4 44.000004 21 CGCATGA 20 7.855426E-4 44.000004 17 CGCATCG 20 7.855426E-4 44.000004 21 TCTTAAT 20 7.855426E-4 44.000004 22 CCGTGTA 20 7.855426E-4 44.000004 36 CACGCGA 20 7.855426E-4 44.000004 37 ATTAACG 20 7.855426E-4 44.000004 13 CGACATA 20 7.855426E-4 44.000004 13 TGACGTG 20 7.855426E-4 44.000004 15 CGCGACA 20 7.855426E-4 44.000004 39 >>END_MODULE