##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545943_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1498616 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.473857212254508 31.0 31.0 33.0 30.0 34.0 2 31.87222343815894 31.0 31.0 34.0 30.0 34.0 3 31.920146988955143 31.0 31.0 34.0 30.0 34.0 4 35.695567777202434 37.0 35.0 37.0 33.0 37.0 5 35.61830982720056 37.0 35.0 37.0 33.0 37.0 6 35.67143818029435 37.0 35.0 37.0 33.0 37.0 7 35.97335675049512 37.0 35.0 37.0 35.0 37.0 8 35.968739823944226 37.0 35.0 37.0 35.0 37.0 9 37.76623297762736 39.0 38.0 39.0 35.0 39.0 10 37.22853219236949 39.0 37.0 39.0 34.0 39.0 11 36.896770086533174 39.0 37.0 39.0 33.0 39.0 12 36.23015969401101 38.0 35.0 39.0 32.0 39.0 13 35.931456090152516 38.0 35.0 39.0 31.0 39.0 14 36.928323199538774 39.0 35.0 41.0 31.0 41.0 15 37.1324508746737 39.0 35.0 41.0 32.0 41.0 16 37.29778809248 39.0 35.0 41.0 32.0 41.0 17 37.238158407490644 39.0 35.0 41.0 32.0 41.0 18 37.11682846039279 39.0 35.0 41.0 32.0 41.0 19 36.98698198871492 38.0 35.0 41.0 32.0 41.0 20 36.753049480320506 38.0 35.0 41.0 32.0 41.0 21 36.61122662509943 38.0 35.0 40.0 32.0 41.0 22 36.5252346164728 38.0 35.0 40.0 31.0 41.0 23 36.44099355672167 38.0 35.0 40.0 31.0 41.0 24 36.47431630250845 38.0 35.0 40.0 31.0 41.0 25 36.43998796222648 38.0 35.0 40.0 31.0 41.0 26 36.205077217913065 38.0 35.0 40.0 31.0 41.0 27 36.18139603474139 37.0 35.0 40.0 31.0 41.0 28 36.17353077773092 37.0 35.0 40.0 31.0 41.0 29 36.116278619739816 37.0 35.0 40.0 31.0 41.0 30 36.00806143802015 37.0 35.0 40.0 30.0 41.0 31 35.778267414734664 37.0 35.0 40.0 30.0 41.0 32 35.498459912345794 37.0 34.0 40.0 29.0 41.0 33 35.20518465037074 37.0 34.0 40.0 27.0 41.0 34 34.926051103151174 37.0 34.0 40.0 25.0 41.0 35 34.65792304366162 37.0 34.0 40.0 23.0 41.0 36 34.47585572288031 37.0 34.0 40.0 23.0 41.0 37 34.36360615394471 37.0 34.0 40.0 23.0 41.0 38 34.2935802100071 37.0 33.0 40.0 23.0 41.0 39 34.19488448008029 36.0 33.0 40.0 22.0 41.0 40 34.02851497648497 36.0 33.0 40.0 21.0 41.0 41 33.988327229924145 36.0 33.0 40.0 21.0 41.0 42 33.97243523357551 36.0 33.0 40.0 21.0 41.0 43 33.8635581096158 36.0 33.0 40.0 21.0 41.0 44 33.752102606671755 36.0 33.0 40.0 20.0 41.0 45 33.65031535763664 35.0 33.0 40.0 20.0 41.0 46 33.6132057845372 35.0 33.0 40.0 20.0 41.0 47 33.54985399862273 35.0 33.0 40.0 20.0 41.0 48 33.451323754717684 35.0 33.0 40.0 20.0 41.0 49 33.39403022522114 36.0 33.0 40.0 19.0 41.0 50 33.244099222215695 35.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 0.0 12 7.0 13 10.0 14 7.0 15 37.0 16 114.0 17 315.0 18 725.0 19 1442.0 20 2631.0 21 4165.0 22 6465.0 23 9570.0 24 14146.0 25 21294.0 26 30859.0 27 37340.0 28 36976.0 29 36842.0 30 39139.0 31 45375.0 32 54831.0 33 71025.0 34 126185.0 35 206378.0 36 96119.0 37 123088.0 38 189151.0 39 344377.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.30646409754067 22.640022527451993 27.081587277861708 16.971926097145634 2 33.68754904525242 24.413792459175664 29.213821285773005 12.684837209798907 3 27.740128224975578 24.498604045332492 34.969531888088746 12.791735841603186 4 24.736356745156865 26.674611775131186 34.7462592151692 13.842772264542752 5 22.187938738142392 30.70633170872325 33.98135346212772 13.124376091006635 6 19.360730167034117 40.235857617962175 30.951357786117324 9.452054428886386 7 85.57829357220263 3.074703593181976 10.09217838325495 1.2548244513604554 8 87.05565668590219 2.0282046901941526 9.72830932006598 1.1878293038376742 9 83.36571876985165 3.8595610883641975 10.889714243008216 1.8850058987759373 10 45.499314033748476 29.08116555541913 16.03579569416048 9.383724716671917 11 39.93858333288848 20.233402018929468 27.302190821397875 12.52582382678418 12 36.63980632797194 20.741604253524585 28.848684386126934 13.769905032376538 13 21.648707874465504 34.322067827915895 29.651091407004866 14.37813289061374 14 16.348150560250257 36.377898007228005 31.466032659467135 15.807918773054604 15 14.971013254896517 23.397387989985425 45.916432228135825 15.71516652698223 16 17.608913824488727 19.032427252878655 44.38602016794162 18.972638754690998 17 17.691723563608022 19.57406033300058 32.16354289557832 30.570673207813076 18 21.57951069520144 22.703481078541802 36.122328868769586 19.594679357487173 19 26.564043090424764 23.846802649911652 29.59237056057055 19.99678369909303 20 28.319529485872298 22.976332829757588 29.271407752219382 19.432729932150732 21 22.15924559727108 26.082598877898004 32.251023611118526 19.507131913712385 22 22.569490783496242 22.404271674665157 30.43174502340826 24.59449251843034 23 19.10282554036524 27.895404826853575 30.272264542751447 22.729505090029733 24 19.019815616542196 23.579689526870126 39.66553139696894 17.73496345961874 25 17.92400454819647 25.228944572859223 36.584488621501436 20.262562257442866 26 17.66116203216835 31.061125732008733 30.966972193010083 20.310740042812835 27 17.30303159715364 30.7043965899203 32.84250268247503 19.15006913045103 28 16.146297650632317 26.129909196218374 39.32394956413117 18.399843589018133 29 16.439568241630944 23.465984615138233 38.93212137065132 21.1623257725795 30 19.16628409145505 27.970006993118986 34.83167135543728 18.032037559988684 31 27.28711024038179 25.446278432900755 28.811850400636317 18.454760926081132 32 27.271228920550694 25.17075755230159 29.446502639768962 18.111510887378753 33 25.750759367309573 26.04569816417281 28.42649484591116 19.77704762260646 34 19.98210348748445 26.355050259706285 30.430277002247408 23.232569250561852 35 20.151259562156014 25.72413480171038 32.66647359964127 21.458132036492337 36 27.97354358955196 25.36240104202811 27.748068884891126 18.9159864835288 37 20.21318336385038 30.529635343543642 29.789485765532998 19.46769552707298 38 20.7865790836345 30.360412540637494 27.37946211704666 21.473546258681345 39 20.772966523779274 29.835728432100016 28.046277365249 21.345027678871705 40 23.68685507161274 26.01567045860981 28.08497974130798 22.212494728469466 41 19.043237226881335 24.379627603068432 29.523573750713993 27.05356141933624 42 21.959127621752337 25.11850934462197 26.94319291933357 25.97917011429212 43 21.85903526987567 26.40282767566875 27.361178580770524 24.376958473685054 44 19.871134433370525 29.224631259775684 29.081098827184547 21.823135479669244 45 18.386965039743338 34.07143657881672 25.578400337377953 21.963198044061986 46 21.914686617519095 30.884829736236636 27.45319681626247 19.747286829981796 47 21.537672092116996 26.68635594441805 29.265001841699274 22.510970121765684 48 22.392060407736206 24.82477165598125 31.63565583178079 21.147512104501754 49 21.109877380196128 24.973175249697054 31.9157142323317 22.00123313777512 50 19.903831268316903 30.320775969294335 29.35595242543787 20.419440336950892 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 344.0 1 1074.0 2 1804.0 3 14159.5 4 26515.0 5 19291.5 6 12068.0 7 12147.0 8 12226.0 9 12548.0 10 12870.0 11 12737.0 12 12604.0 13 11892.0 14 11180.0 15 10425.5 16 9671.0 17 9232.5 18 8794.0 19 7746.0 20 6698.0 21 6973.5 22 7249.0 23 7213.5 24 7178.0 25 8550.5 26 9923.0 27 11702.5 28 13482.0 29 15811.5 30 18141.0 31 24168.0 32 30195.0 33 32838.0 34 35481.0 35 39498.5 36 43516.0 37 46583.5 38 49651.0 39 61280.0 40 72909.0 41 95301.5 42 117694.0 43 128531.5 44 139369.0 45 141790.5 46 144212.0 47 132269.0 48 120326.0 49 117359.0 50 114392.0 51 106509.0 52 98626.0 53 88934.0 54 79242.0 55 71796.0 56 64350.0 57 58470.5 58 52591.0 59 47035.5 60 41480.0 61 39357.5 62 37235.0 63 32581.0 64 27927.0 65 24022.0 66 20117.0 67 16732.5 68 13348.0 69 11503.5 70 9659.0 71 8282.0 72 6905.0 73 5566.0 74 4227.0 75 3115.5 76 2004.0 77 1603.0 78 1202.0 79 910.5 80 619.0 81 469.5 82 320.0 83 250.5 84 181.0 85 115.5 86 50.0 87 37.5 88 25.0 89 15.0 90 5.0 91 5.5 92 6.0 93 3.0 94 0.0 95 1.5 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1498616.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.168310748024602 #Duplication Level Percentage of deduplicated Percentage of total 1 78.36865241932688 16.589319873162413 2 7.015708163741372 2.970213810550608 3 2.647246315538804 1.6811319790166577 4 1.4793162652329834 1.2525850558823592 5 1.0465164072212176 1.1076492255482497 6 0.8086014247697351 1.0270035738492715 7 0.6000418200996693 0.8891310196776051 8 0.48786709974828046 0.8261857896967293 9 0.4244448927079849 0.8086303245829127 >10 4.754902152360087 23.626781640721052 >50 1.5255353092488169 23.132862516413145 >100 0.8379742306496988 24.61209964111091 >500 0.002554799483684543 0.3374641256658498 >1k 3.1934993546056786E-4 0.13682439710490385 >5k 0.0 0.0 >10k+ 3.1934993546056786E-4 1.0021170270173394 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14824 0.9891793494797867 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2024 0.13505794679891314 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.022954512697048478 0.0 2 0.0 0.0 0.0 0.08814799788604953 0.0 3 0.0 0.0 0.0 0.12584945042625997 0.0 4 0.0 0.0 0.0 0.19638119438201648 0.0 5 0.0 0.0 0.0 0.36960769136323113 0.0 6 0.0 0.0 0.0 0.5088695169409642 0.0 7 0.0 0.0 0.0 0.6167023440294245 0.0 8 0.0 0.0 0.0 0.8904882905293952 0.0 9 0.0 0.0 0.0 1.0083303528055219 0.0 10 0.0 0.0 0.0 1.256159016052144 0.0 11 0.0 0.0 0.0 1.4379267270601674 0.0 12 0.0 0.0 0.0 1.6146230922397733 0.0 13 0.0 0.0 0.0 1.6786821974408388 0.0 14 0.0 0.0 0.0 1.7038387418791738 0.0 15 0.0 0.0 0.0 1.7444095085065154 0.0 16 0.0 0.0 0.0 1.8288874534904205 0.0 17 0.0 0.0 0.0 1.9402568770118562 0.0 18 0.0 0.0 0.0 2.1004713682491043 0.0 19 0.0 0.0 0.0 2.1734720568844854 0.0 20 0.0 0.0 0.0 2.257883273633806 0.0 21 0.0 0.0 0.0 2.36111185253594 0.0 22 0.0 0.0 0.0 2.4792208277504044 0.0 23 0.0 0.0 0.0 2.613478035734304 0.0 24 0.0 0.0 0.0 2.71163526880802 0.0 25 0.0 0.0 0.0 2.794711920865652 0.0 26 0.0 0.0 0.0 2.8765207364661793 0.0 27 0.0 0.0 0.0 2.9641349084755535 0.0 28 0.0 0.0 0.0 3.056953882782514 0.0 29 0.0 0.0 0.0 3.160716287561323 0.0 30 0.0 0.0 0.0 3.2979095378669387 0.0 31 0.0 0.0 0.0 3.4128822860559342 0.0 32 0.0 0.0 0.0 3.5227169601819277 0.0 33 0.0 0.0 0.0 3.6378231648400923 0.0 34 0.0 0.0 0.0 3.7679432222797566 0.0 35 0.0 0.0 0.0 3.9217518029968983 0.0 36 0.0 0.0 0.0 4.040928429964714 0.0 37 6.672823458444325E-5 0.0 0.0 4.162173632204648 0.0 38 6.672823458444325E-5 0.0 0.0 4.299700523683185 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTACG 20 7.857248E-4 44.000004 1 CGCTATT 20 7.857248E-4 44.000004 42 CGTACTA 20 7.857248E-4 44.000004 41 TCGAACA 20 7.857248E-4 44.000004 41 CTATGCG 35 1.4464786E-7 44.0 1 CGGCATA 25 4.4434895E-5 44.0 20 ACTACGG 60 0.0 44.0 2 AGCGATC 25 4.4434895E-5 44.0 15 CGTCGAC 25 4.4434895E-5 44.0 19 TGCGTTG 35 1.4464786E-7 44.0 1 CGTTTTT 11135 0.0 43.28873 1 CGGTCTA 180 0.0 41.555557 31 TCACGAC 175 0.0 41.485718 25 ATTAACG 70 0.0 40.857143 1 ACGGTCT 185 0.0 40.432434 30 GCCGATT 55 7.8216544E-11 40.0 9 GCGATAC 55 7.8216544E-11 40.0 9 ATACCGG 55 7.8216544E-11 40.0 2 CGCATGG 100 0.0 39.600002 2 TCGTAAG 50 1.3478711E-9 39.600002 1 >>END_MODULE