##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545942_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2280082 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.41557979055139 31.0 31.0 33.0 30.0 34.0 2 31.80649117005441 31.0 31.0 34.0 30.0 34.0 3 31.924638675275713 31.0 31.0 34.0 30.0 34.0 4 35.6657001809584 37.0 35.0 37.0 33.0 37.0 5 35.57782132396993 37.0 35.0 37.0 33.0 37.0 6 35.63644333844134 37.0 35.0 37.0 33.0 37.0 7 35.93655359763377 37.0 35.0 37.0 35.0 37.0 8 35.91561970139671 37.0 35.0 37.0 35.0 37.0 9 37.690826908856785 39.0 38.0 39.0 35.0 39.0 10 37.15210067006362 39.0 37.0 39.0 33.0 39.0 11 36.82547645216268 39.0 35.0 39.0 33.0 39.0 12 35.91878055262925 37.0 35.0 39.0 32.0 39.0 13 35.547260580979106 37.0 35.0 39.0 31.0 39.0 14 36.435351447886525 38.0 35.0 41.0 31.0 41.0 15 36.69361847512502 38.0 35.0 41.0 31.0 41.0 16 36.89039780148258 38.0 35.0 41.0 32.0 41.0 17 36.83971716806676 38.0 35.0 41.0 32.0 41.0 18 36.79204388263229 38.0 35.0 40.0 32.0 41.0 19 36.71124547275054 38.0 35.0 40.0 32.0 41.0 20 36.52634335080931 37.0 35.0 40.0 32.0 41.0 21 36.35396753274663 37.0 35.0 40.0 31.0 41.0 22 36.24987039939791 37.0 35.0 40.0 31.0 41.0 23 36.19144969347594 37.0 35.0 40.0 31.0 41.0 24 36.24634991197685 37.0 35.0 40.0 31.0 41.0 25 36.2094218541263 37.0 35.0 40.0 31.0 41.0 26 35.960294410464186 37.0 35.0 40.0 31.0 41.0 27 35.94013724067818 37.0 35.0 40.0 30.0 41.0 28 35.92777408882663 37.0 35.0 40.0 30.0 41.0 29 35.87348656758836 36.0 35.0 40.0 30.0 41.0 30 35.78378979352497 36.0 35.0 40.0 30.0 41.0 31 35.57827832507778 36.0 34.0 40.0 30.0 41.0 32 35.422745322317354 36.0 34.0 40.0 29.0 41.0 33 35.24801695728487 36.0 34.0 40.0 29.0 41.0 34 35.06765151428765 36.0 34.0 40.0 27.0 41.0 35 34.906675724820424 36.0 34.0 40.0 27.0 41.0 36 34.723933612913925 36.0 34.0 40.0 25.0 41.0 37 34.64483821195904 36.0 34.0 40.0 25.0 41.0 38 34.55704268530693 36.0 34.0 40.0 25.0 41.0 39 34.478240256271484 36.0 34.0 40.0 24.0 41.0 40 34.2879804322827 36.0 33.0 40.0 23.0 41.0 41 34.26255020652766 36.0 34.0 40.0 23.0 41.0 42 34.23475383780057 35.0 33.0 40.0 23.0 41.0 43 34.14793590756824 35.0 33.0 40.0 23.0 41.0 44 34.00104294494672 35.0 33.0 40.0 23.0 41.0 45 33.88504536240363 35.0 33.0 40.0 23.0 41.0 46 33.861632607950064 35.0 33.0 40.0 23.0 41.0 47 33.795031494481336 35.0 33.0 40.0 23.0 41.0 48 33.70895783572696 35.0 33.0 39.0 23.0 41.0 49 33.663620869775734 35.0 33.0 39.0 23.0 41.0 50 33.450568005887504 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 0.0 12 7.0 13 12.0 14 36.0 15 67.0 16 187.0 17 459.0 18 1022.0 19 2152.0 20 3649.0 21 5980.0 22 9079.0 23 13152.0 24 18799.0 25 27413.0 26 38353.0 27 46854.0 28 51514.0 29 55183.0 30 62164.0 31 74623.0 32 91820.0 33 120632.0 34 219610.0 35 365205.0 36 147564.0 37 187437.0 38 281284.0 39 455822.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.78476563562188 22.41599205642604 28.02706218460564 13.772180123346441 2 32.20314006250653 24.304082046172024 30.392415711364766 13.100362179956685 3 29.931993673911727 24.5437664084011 32.470279577664314 13.053960340022858 4 26.24436314132562 26.626323088380154 32.23962997822008 14.889683792074146 5 21.84127588393751 32.28186530133566 31.023708796438022 14.853150018288815 6 20.45163287987011 41.06637392865695 28.231440799058984 10.250552392413956 7 87.23809055990091 3.4410165950171967 7.483064205585589 1.8378286394962986 8 88.28866681110593 2.3338634312274733 7.2673263505435335 2.110143407123077 9 84.5486697408251 3.8021878160522298 9.024938576770484 2.624203866352175 10 52.22991980112997 22.72856853393869 14.072125476189015 10.969386188742334 11 46.088342436807096 20.6304422384809 19.843365282476682 13.437850042235322 12 40.514683243848246 20.44294898165943 24.860684835019093 14.18168293947323 13 22.710279718010142 37.475801308900294 25.465706935101455 14.348212037988105 14 16.81237780044753 39.904442033225116 28.73471217263239 14.548467993694963 15 15.479004702462456 21.91491358644119 47.71516989301262 14.890911818083735 16 17.479502930157775 17.606252757576264 45.61616643611941 19.29807787614656 17 18.01141362459771 17.897865076782328 28.749974781608735 35.340746517011226 18 22.47765650533621 22.59497684732391 34.044214199313885 20.883152448025992 19 28.870584478979268 23.576081912843485 26.534089563445523 21.019244044731725 20 30.830250841855687 23.391483288758913 24.458462458806306 21.319803410579095 21 23.677657207065362 26.933768171495586 28.832691104969033 20.555883516470022 22 23.34288854523653 22.87856313939586 26.52720384617746 27.25134446919014 23 19.8063052118301 29.138206432926534 26.256950407923924 24.79853794731944 24 20.79999754394798 23.393983198849867 37.22181921527384 18.584200041928316 25 19.544165516854218 22.813521618959317 35.22987331157388 22.412439552612582 26 18.033474234698577 30.936738240115925 27.937504002049053 23.092283523136448 27 19.13545214601931 30.72069337857147 29.876951793838995 20.266902681570222 28 16.819745956505074 26.166865928506077 38.19700344110431 18.81638467388454 29 17.459152784855984 24.086677584402665 36.76784431437115 21.6863253163702 30 20.587505186216987 27.416908690126057 32.18897390532446 19.806612218332496 31 29.789761947158038 23.786556799273008 25.413910552339786 21.009770701229165 32 29.00246570079497 24.037688118234342 27.373357624857352 19.58648855611333 33 27.18678538754308 24.108562762216444 27.558877268449116 21.145774581791358 34 19.71323838353182 25.936567193636016 29.268421048014943 25.081773374817224 35 19.529736211241524 24.65314843939823 32.034067195828925 23.78304815353132 36 30.052077074421007 22.919877443004243 26.878375426848685 20.149670055726066 37 20.85087290720246 30.122600853828942 28.217274641876916 20.80925159709168 38 21.28620812760243 30.980596311887027 24.523021540453367 23.210174020057174 39 21.12766119814989 28.437836884813795 26.637857761255958 23.79664415578036 40 24.19899810620846 23.48998851795681 26.864472418097247 25.446540957737483 41 18.769149530587057 22.94351694368887 27.367436785168252 30.919896740555824 42 22.99733079775201 24.55477478441565 24.690603232690755 27.757291185141586 43 22.748129233948603 25.173085880244656 25.973013251277806 26.105771634528935 44 21.196562228902295 27.87676057264607 28.77839481211641 22.14828238633523 45 18.7962538189416 33.35551089829226 24.325704075555176 23.52253120721097 46 22.949350067234427 28.673793310942326 27.93276733029777 20.44408929152548 47 22.18534245698181 25.569080410265947 28.146882436684294 24.09869469606795 48 22.763216410637863 23.49946186145937 30.915160068804543 22.822161659098224 49 21.853512285961646 22.542961174203384 31.875300976017527 23.728225563817443 50 20.233921411598356 29.965194234242453 27.91061900405336 21.89026535010583 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 632.0 1 1652.0 2 2672.0 3 13349.5 4 24027.0 5 17318.5 6 10610.0 7 10896.5 8 11183.0 9 11471.0 10 11759.0 11 11676.5 12 11594.0 13 10973.0 14 10352.0 15 9422.0 16 8492.0 17 7868.5 18 7245.0 19 6629.0 20 6013.0 21 5983.5 22 5954.0 23 6661.5 24 7369.0 25 8423.0 26 9477.0 27 10943.5 28 12410.0 29 17295.0 30 22180.0 31 24035.0 32 25890.0 33 31829.5 34 37769.0 35 42486.5 36 47204.0 37 51496.0 38 55788.0 39 71618.0 40 87448.0 41 127123.0 42 166798.0 43 192409.0 44 218020.0 45 224525.0 46 231030.0 47 222190.5 48 213351.0 49 212370.5 50 211390.0 51 193539.0 52 175688.0 53 155865.5 54 136043.0 55 122757.0 56 109471.0 57 102679.0 58 95887.0 59 88641.5 60 81396.0 61 76181.5 62 70967.0 63 62559.5 64 54152.0 65 45773.5 66 37395.0 67 30567.0 68 23739.0 69 19476.5 70 15214.0 71 12820.5 72 10427.0 73 8394.0 74 6361.0 75 4844.5 76 3328.0 77 2429.0 78 1530.0 79 1145.5 80 761.0 81 684.5 82 608.0 83 398.5 84 189.0 85 186.5 86 184.0 87 113.5 88 43.0 89 30.0 90 17.0 91 17.0 92 17.0 93 12.0 94 7.0 95 4.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2280082.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.559900301964152 #Duplication Level Percentage of deduplicated Percentage of total 1 78.67053430463335 14.601172733962459 2 8.0509580778547 2.9884995852055236 3 2.8453172079649804 1.5842641112187912 4 1.4537640586052532 1.0792686396116908 5 0.9850512610529214 0.9141226598733143 6 0.7076798741597428 0.7880680746066817 7 0.5063773943757094 0.6578819768347085 8 0.4368805728089103 0.6486767900158692 9 0.38001188664723573 0.6347684456760598 >10 3.479467179440596 14.413635017139741 >50 1.086347575993676 14.792413810795546 >100 1.3854075349530968 44.44503152340963 >500 0.009331760566380833 1.0734633087080896 >1k 0.002632035031543312 0.7969705666918492 >5k 0.0 0.0 >10k+ 2.3927591195848285E-4 0.5817627562500403 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13100 0.5745407402014489 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4710 0.206571518041895 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08688284017855498 0.0 2 0.0 0.0 0.0 0.33060214501057417 0.0 3 0.0 0.0 0.0 0.45270301682132486 0.0 4 0.0 0.0 0.0 0.63423157588192 0.0 5 0.0 0.0 0.0 1.0442168307981905 0.0 6 0.0 0.0 0.0 1.3938972370291947 0.0 7 0.0 0.0 0.0 1.627485327282089 0.0 8 0.0 0.0 0.0 2.2678570332119636 0.0 9 0.0 0.0 0.0 2.495261135345132 0.0 10 0.0 0.0 0.0 2.9088866102184046 0.0 11 0.0 0.0 0.0 3.2450587303439087 0.0 12 0.0 0.0 0.0 3.5649156477705626 0.0 13 0.0 0.0 0.0 3.6883322617344465 0.0 14 0.0 0.0 0.0 3.731313172070127 0.0 15 0.0 0.0 0.0 3.8081963718848706 0.0 16 0.0 0.0 0.0 3.972664141026507 0.0 17 4.385807177110297E-5 0.0 0.0 4.161560856144647 0.0 18 4.385807177110297E-5 0.0 0.0 4.479926599131084 0.0 19 4.385807177110297E-5 0.0 0.0 4.588124462190395 0.0 20 4.385807177110297E-5 0.0 0.0 4.716891760910353 0.0 21 4.385807177110297E-5 0.0 0.0 4.8925433383536205 0.0 22 4.385807177110297E-5 0.0 0.0 5.066440592926044 0.0 23 4.385807177110297E-5 0.0 0.0 5.269722755585106 0.0 24 4.385807177110297E-5 0.0 0.0 5.417743747812579 0.0 25 4.385807177110297E-5 0.0 0.0 5.535020231728508 0.0 26 4.385807177110297E-5 0.0 0.0 5.658129839189994 0.0 27 4.385807177110297E-5 0.0 0.0 5.7834323502400355 0.0 28 4.385807177110297E-5 0.0 0.0 5.917594191787839 0.0 29 4.385807177110297E-5 0.0 0.0 6.066273055091878 0.0 30 4.385807177110297E-5 0.0 0.0 6.254380324918139 0.0 31 4.385807177110297E-5 0.0 0.0 6.415339448318087 0.0 32 4.385807177110297E-5 0.0 0.0 6.552790645248724 0.0 33 4.385807177110297E-5 0.0 0.0 6.705811457658101 0.0 34 8.771614354220594E-5 0.0 0.0 6.857867392488516 0.0 35 8.771614354220594E-5 0.0 0.0 7.054176121735972 0.0 36 8.771614354220594E-5 0.0 0.0 7.206582921140556 0.0 37 8.771614354220594E-5 0.0 0.0 7.353025022784268 0.0 38 8.771614354220594E-5 0.0 0.0 7.52367678004563 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGTCG 20 7.8581134E-4 44.0 29 TAAGTCG 40 8.3182385E-9 44.0 1 CGACATA 35 1.4469151E-7 44.0 23 ATCGTTC 20 7.8581134E-4 44.0 25 ACCTAGT 35 1.4469151E-7 44.0 29 GCGTAAG 190 0.0 44.0 1 AATCGTC 20 7.8581134E-4 44.0 21 TACCGTA 20 7.8581134E-4 44.0 28 CGTAAGG 330 0.0 42.666668 2 CGTTTTT 9400 0.0 42.572342 1 CGACGGT 585 0.0 41.36752 28 GGTACGC 65 0.0 40.615383 8 CGTTTAG 175 0.0 40.228573 30 GGCGATA 695 0.0 40.20144 8 ACGACGG 605 0.0 40.0 27 CCGCTCG 215 0.0 39.906975 19 CGGTCTA 605 0.0 39.636364 31 TAATGCG 100 0.0 39.6 1 AATACCG 50 1.3496901E-9 39.6 38 ACCGCTC 240 0.0 39.416664 18 >>END_MODULE