##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545941_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1277678 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.450705107233592 31.0 31.0 33.0 30.0 34.0 2 31.847233027413793 31.0 31.0 34.0 30.0 34.0 3 31.89030021648647 31.0 31.0 34.0 30.0 34.0 4 35.66129337751765 37.0 35.0 37.0 33.0 37.0 5 35.578565961063745 37.0 35.0 37.0 33.0 37.0 6 35.63257252609812 37.0 35.0 37.0 33.0 37.0 7 35.943287745425685 37.0 35.0 37.0 35.0 37.0 8 35.93233193339793 37.0 35.0 37.0 35.0 37.0 9 37.75078149580724 39.0 38.0 39.0 35.0 39.0 10 37.24827695240898 39.0 37.0 39.0 34.0 39.0 11 36.911667102352865 39.0 37.0 39.0 33.0 39.0 12 35.90775297062327 37.0 35.0 39.0 32.0 39.0 13 35.44930334560038 37.0 35.0 39.0 31.0 39.0 14 36.36246456462426 38.0 35.0 41.0 31.0 41.0 15 36.65460937732355 38.0 35.0 41.0 32.0 41.0 16 36.884636817727156 38.0 35.0 41.0 32.0 41.0 17 36.836093287980226 38.0 35.0 41.0 32.0 41.0 18 36.70718130859262 38.0 35.0 40.0 32.0 41.0 19 36.544687315583424 37.0 35.0 40.0 32.0 41.0 20 36.28235830937059 36.0 35.0 40.0 32.0 41.0 21 36.11687764835898 36.0 35.0 40.0 31.0 41.0 22 35.98345357750544 35.0 35.0 40.0 31.0 41.0 23 35.94677532210776 35.0 35.0 40.0 31.0 41.0 24 35.971432551863614 35.0 35.0 40.0 31.0 41.0 25 35.918681389207606 35.0 35.0 40.0 31.0 41.0 26 35.666899641380695 35.0 35.0 40.0 31.0 41.0 27 35.61971952244619 35.0 34.0 40.0 30.0 41.0 28 35.618571345832045 36.0 35.0 40.0 30.0 41.0 29 35.59666676580484 36.0 35.0 40.0 30.0 41.0 30 35.48162134747565 36.0 35.0 40.0 30.0 41.0 31 35.178913622994216 35.0 34.0 40.0 29.0 41.0 32 34.868564693138644 35.0 34.0 40.0 27.0 41.0 33 34.53932994072059 35.0 34.0 40.0 25.0 41.0 34 34.26145163335363 35.0 34.0 40.0 23.0 41.0 35 33.97846797080329 35.0 33.0 40.0 23.0 41.0 36 33.733479796944145 35.0 33.0 40.0 21.0 41.0 37 33.630471057653025 35.0 33.0 40.0 21.0 41.0 38 33.57121434352004 35.0 33.0 40.0 21.0 41.0 39 33.51136906168847 35.0 33.0 40.0 21.0 41.0 40 33.33426888464856 35.0 33.0 40.0 20.0 41.0 41 33.30272337787768 35.0 33.0 40.0 19.0 41.0 42 33.22962827879951 35.0 33.0 40.0 18.0 41.0 43 33.12856995267978 35.0 33.0 40.0 18.0 41.0 44 32.9858008042715 35.0 33.0 39.0 18.0 41.0 45 32.869892883809534 35.0 32.0 39.0 18.0 41.0 46 32.84030170355911 35.0 32.0 39.0 18.0 41.0 47 32.783719372173586 35.0 32.0 39.0 18.0 41.0 48 32.70270443726823 35.0 32.0 39.0 18.0 41.0 49 32.66132468431013 35.0 32.0 39.0 18.0 41.0 50 32.461556824176355 35.0 32.0 38.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 9.0 14 16.0 15 32.0 16 110.0 17 294.0 18 727.0 19 1485.0 20 2565.0 21 4146.0 22 6326.0 23 9104.0 24 13633.0 25 20251.0 26 28911.0 27 34603.0 28 35791.0 29 34673.0 30 36597.0 31 41848.0 32 50655.0 33 66796.0 34 125583.0 35 225744.0 36 76032.0 37 93598.0 38 138173.0 39 229971.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.942303146802246 22.66838749669322 28.67537830345361 17.713931053050924 2 33.87246238880219 24.779326246519076 29.126196115140125 12.222015249538616 3 27.054703923836836 25.197976328934207 35.52084327976219 12.226476467466764 4 24.342439957485375 25.878742531373323 35.7594793054275 14.019338205713803 5 22.019475955600708 29.971949113939505 34.38941579959896 13.619159130860828 6 18.681389207609428 40.07418144477717 31.1429796865877 10.101449661025704 7 83.73385156510483 4.076066113684355 10.905329824885456 1.2847524963253654 8 85.83117186020264 2.3344692481204183 10.434006064125704 1.4003528275512296 9 82.84348638702396 3.436077008448138 11.67414638116959 2.046290223358311 10 53.22639976582519 20.63023703937925 16.090986930979483 10.052376263816079 11 47.401927559212886 16.673841139942926 22.68591930048103 13.238312000363159 12 42.43800081084593 18.35924231300844 26.658281664081247 12.544475212064384 13 19.997839831319002 41.45653286665341 26.039972512636204 12.505654789391379 14 13.407212145783209 42.54366123545995 31.005777668551858 13.04334895020498 15 11.662797668896232 20.55134392233411 53.990755104181176 13.79510330458848 16 13.379662168402367 15.044322591451053 51.62310065603384 19.95291458411274 17 14.1768113718793 15.227858662354679 32.19073976385287 38.40459020191316 18 19.539273588494126 20.120405923871274 38.603857936037095 21.73646255159751 19 27.549272978011675 21.86341159509673 28.809527909222826 21.77778751766877 20 30.20534125186471 20.443335488284216 28.171573745497692 21.179749514353382 21 20.817842993305042 26.526166999823115 31.29528723199429 21.360702774877552 22 21.32743930786943 22.461840933318097 27.824851018801294 28.385868740011176 23 17.863107919209693 28.907048567792508 27.501843187407154 25.728000325590646 24 18.95360176820764 21.878204054542692 42.077894430365085 17.090299746884583 25 16.07486393285319 23.20733392920595 39.80885637852417 20.908945759416692 26 16.68526811919748 31.69178775873107 30.521852923819615 21.10109119825183 27 16.87655262123947 31.669403402109136 31.676838765322717 19.777205211328678 28 13.987327010404812 25.824894848310763 42.32099167395854 17.866786467325884 29 13.847307381045928 21.807920305429068 42.24162895502623 22.103143358498777 30 18.094543382605007 27.454961265671006 35.03347478785735 19.41702056386664 31 28.430793987217434 24.627410036018464 27.259763414569242 19.682032562194856 32 29.386277293653016 24.113822105413103 28.588580221307712 17.911320379626165 33 27.16192968807477 25.359597645103072 27.18572285035823 20.292749816463928 34 18.419820956453815 26.114326144771997 30.55065517289959 24.915197725874595 35 19.098317416438256 24.181679578109662 33.38712883840842 23.332874167043652 36 30.882507173168825 22.423177044607485 27.657985814892328 19.036329967331362 37 19.779709754726934 30.842904080683866 29.770489904342096 19.606896260247105 38 20.330631035362586 31.779838112576098 25.534837415999963 22.354693436061353 39 20.279209628717094 29.855879180826467 28.18276592380866 21.68214526664778 40 22.843470733627722 24.88592587490745 27.17578294374639 25.09482044771844 41 17.6772238388702 22.76935190243551 28.455448086294044 31.097976172400244 42 21.955531831963924 24.794431773889823 24.500382725538046 28.74965366860821 43 21.912876327212334 25.84657480210194 26.51959257340269 25.72095629728304 44 19.916050835969624 29.40365256347843 28.6843790062911 21.99591759426084 45 16.999353514735326 35.74476511296273 24.19960271680345 23.05627865549849 46 22.13171080663516 30.457282664333267 28.10050732657211 19.31049920245946 47 22.033642279197103 26.88713431709711 27.903744135846438 23.17547926785935 48 22.442822056887575 22.668465763674416 31.029492563854117 23.859219615583896 49 19.571284783803115 22.4972176088185 34.46369116475356 23.467806442624823 50 19.085794699446964 31.327768029190455 28.261580773872602 21.32485649748998 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 587.0 1 979.0 2 1371.0 3 11695.0 4 22019.0 5 16282.5 6 10546.0 7 11247.5 8 11949.0 9 12650.0 10 13351.0 11 13155.5 12 12960.0 13 11997.5 14 11035.0 15 9938.0 16 8841.0 17 8239.0 18 7637.0 19 6755.0 20 5873.0 21 5464.5 22 5056.0 23 5175.0 24 5294.0 25 5304.0 26 5314.0 27 6772.0 28 8230.0 29 9926.5 30 11623.0 31 13073.0 32 14523.0 33 18158.0 34 21793.0 35 24112.5 36 26432.0 37 30549.5 38 34667.0 39 44623.5 40 54580.0 41 75826.5 42 97073.0 43 111222.0 44 125371.0 45 129107.0 46 132843.0 47 123088.5 48 113334.0 49 108759.0 50 104184.0 51 93461.5 52 82739.0 53 76676.5 54 70614.0 55 62703.5 56 54793.0 57 50797.5 58 46802.0 59 44222.0 60 41642.0 61 37513.0 62 33384.0 63 30325.0 64 27266.0 65 23590.5 66 19915.0 67 16343.5 68 12772.0 69 10727.5 70 8683.0 71 7105.0 72 5527.0 73 4609.0 74 3691.0 75 2683.5 76 1676.0 77 1228.5 78 781.0 79 646.5 80 512.0 81 358.0 82 204.0 83 153.0 84 102.0 85 70.5 86 39.0 87 34.0 88 29.0 89 21.0 90 13.0 91 9.0 92 5.0 93 3.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1277678.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.821438452044344 #Duplication Level Percentage of deduplicated Percentage of total 1 81.18818043811966 16.092665215876593 2 7.1523585840714885 2.8354007092224807 3 2.335787441007624 1.3889600099697232 4 1.2317427184099954 0.9765964992687004 5 0.767690020738516 0.760836024815857 6 0.5379723999612794 0.639803208883865 7 0.4219076311055665 0.5853971299684771 8 0.32158786677544016 0.5099467286570899 9 0.28604203503237 0.5102788132882471 >10 3.0914088858754627 14.404131382915741 >50 1.3586193247821727 19.578083492237162 >100 1.299514192086845 39.68542203557349 >500 0.0063897440299291695 0.7082328777920693 >1k 3.993590018705731E-4 0.3252630931985708 >5k 0.0 0.0 >10k+ 3.993590018705731E-4 0.9989827783319453 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12620 0.9877293026881577 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4109 0.3215990257326181 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06018730853939725 0.0 2 0.0 0.0 0.0 0.23002665773379521 0.0 3 0.0 0.0 0.0 0.3227730304505517 0.0 4 0.0 0.0 0.0 0.47625458057507447 0.0 5 0.0 0.0 0.0 0.7896355732821572 0.0 6 0.0 0.0 0.0 1.0783624669126337 0.0 7 0.0 0.0 0.0 1.2485148840318139 0.0 8 0.0 0.0 0.0 1.6518246381326125 0.0 9 0.0 0.0 0.0 1.7944270778709503 0.0 10 0.0 0.0 0.0 2.032123899761912 0.0 11 0.0 0.0 0.0 2.2899353358201364 0.0 12 0.0 0.0 0.0 2.503447660521665 0.0 13 0.0 0.0 0.0 2.5921241502162515 0.0 14 0.0 0.0 0.0 2.624839748356002 0.0 15 0.0 0.0 0.0 2.679861436136491 0.0 16 0.0 0.0 0.0 2.810489027751906 0.0 17 0.0 0.0 0.0 2.962092170327735 0.0 18 0.0 0.0 0.0 3.2348525997943143 0.0 19 0.0 0.0 0.0 3.321337614015425 0.0 20 0.0 0.0 0.0 3.4297373829712963 0.0 21 0.0 0.0 0.0 3.5642000566652943 0.0 22 0.0 0.0 0.0 3.6924013718636464 0.0 23 0.0 0.0 0.0 3.8591100418102213 0.0 24 0.0 0.0 0.0 3.9708752909575025 0.0 25 7.826698119557509E-5 0.0 0.0 4.065891406128931 0.0 26 7.826698119557509E-5 0.0 0.0 4.162238059980684 0.0 27 7.826698119557509E-5 0.0 0.0 4.250758015712879 0.0 28 7.826698119557509E-5 0.0 0.0 4.347730805414197 0.0 29 7.826698119557509E-5 0.0 0.0 4.4495561479496395 0.0 30 7.826698119557509E-5 0.0 0.0 4.587932170703417 0.0 31 7.826698119557509E-5 0.0 0.0 4.718011893450463 0.0 32 7.826698119557509E-5 0.0 0.0 4.825863793537965 0.0 33 7.826698119557509E-5 0.0 0.0 4.933637426644272 0.0 34 7.826698119557509E-5 0.0 0.0 5.052994572967524 0.0 35 7.826698119557509E-5 0.0 0.0 5.216885631591058 0.0 36 7.826698119557509E-5 0.0 0.0 5.336947180745071 0.0 37 7.826698119557509E-5 0.0 0.0 5.455599924237562 0.0 38 7.826698119557509E-5 0.0 0.0 5.570104517726689 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAG 40 8.314601E-9 44.000004 1 ACATTCG 20 7.8568107E-4 44.000004 14 ACTACGC 20 7.8568107E-4 44.000004 10 CGTACGT 20 7.8568107E-4 44.000004 35 TCGTAAT 20 7.8568107E-4 44.000004 35 GACGATT 40 8.314601E-9 44.000004 35 ATCATAA 20 7.8568107E-4 44.000004 21 TGTCGTG 20 7.8568107E-4 44.000004 13 ATCGCTA 20 7.8568107E-4 44.000004 10 GTACGCC 20 7.8568107E-4 44.000004 22 AACACGT 20 7.8568107E-4 44.000004 41 ATCTCGT 45 4.802132E-10 44.0 19 CTCACGT 30 2.5279387E-6 44.0 44 ACCGGTT 25 4.4431188E-5 44.0 18 GGTGTTA 30 2.5279387E-6 44.0 8 GTCGATG 25 4.4431188E-5 44.0 1 GATCGAT 30 2.5279387E-6 44.0 9 CTATCCG 30 2.5279387E-6 44.0 44 CGGCATG 25 4.4431188E-5 44.0 19 GCTATAA 30 2.5279387E-6 44.0 36 >>END_MODULE