##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545940_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1707215 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.604048113447927 31.0 31.0 33.0 30.0 34.0 2 32.01114095178404 31.0 31.0 34.0 30.0 34.0 3 32.007381612743565 33.0 31.0 34.0 30.0 34.0 4 35.76910172415308 37.0 35.0 37.0 35.0 37.0 5 35.71972832947227 37.0 35.0 37.0 33.0 37.0 6 35.78191616170195 37.0 35.0 37.0 33.0 37.0 7 36.07116561182979 37.0 35.0 37.0 35.0 37.0 8 36.0789045316495 37.0 35.0 37.0 35.0 37.0 9 37.89900979079964 39.0 38.0 39.0 35.0 39.0 10 37.41993363460372 39.0 37.0 39.0 35.0 39.0 11 37.0711099656458 39.0 37.0 39.0 33.0 39.0 12 36.247080771900436 38.0 35.0 39.0 33.0 39.0 13 35.916189232170524 38.0 35.0 39.0 32.0 39.0 14 36.927139815430394 39.0 35.0 41.0 32.0 41.0 15 37.14418277721318 39.0 35.0 41.0 32.0 41.0 16 37.337540380092726 39.0 35.0 41.0 33.0 41.0 17 37.280665294060796 39.0 35.0 41.0 33.0 41.0 18 37.13400069704167 38.0 35.0 40.0 33.0 41.0 19 36.92688149998682 37.0 35.0 40.0 32.0 41.0 20 36.66354501336973 37.0 35.0 40.0 32.0 41.0 21 36.522381188075315 37.0 35.0 40.0 32.0 41.0 22 36.405075517729166 37.0 35.0 40.0 32.0 41.0 23 36.38195423540679 37.0 35.0 40.0 32.0 41.0 24 36.39400602736035 37.0 35.0 40.0 32.0 41.0 25 36.355037297587 37.0 35.0 40.0 32.0 41.0 26 36.12674502039872 36.0 35.0 40.0 31.0 41.0 27 36.11196890842688 36.0 35.0 40.0 31.0 41.0 28 36.12354682919258 36.0 35.0 40.0 31.0 41.0 29 36.118140363105994 36.0 35.0 40.0 31.0 41.0 30 35.98368922484865 36.0 35.0 40.0 31.0 41.0 31 35.70778490114016 36.0 35.0 40.0 30.0 41.0 32 35.36268835501094 36.0 34.0 40.0 29.0 41.0 33 34.987547555521715 36.0 34.0 40.0 27.0 41.0 34 34.649918141534606 36.0 34.0 40.0 24.0 41.0 35 34.34413533151946 36.0 34.0 40.0 23.0 41.0 36 34.142021362277156 36.0 34.0 40.0 21.0 41.0 37 34.03152737060066 36.0 33.0 40.0 21.0 41.0 38 33.99416007942761 36.0 33.0 40.0 21.0 41.0 39 33.92569067164944 36.0 33.0 40.0 21.0 41.0 40 33.75300123300229 36.0 33.0 40.0 18.0 41.0 41 33.73421156679153 36.0 33.0 40.0 18.0 41.0 42 33.69762859393808 36.0 33.0 40.0 18.0 41.0 43 33.59289544667778 35.0 33.0 40.0 18.0 41.0 44 33.460420040826726 35.0 33.0 40.0 18.0 41.0 45 33.35709093465088 35.0 33.0 40.0 18.0 41.0 46 33.33895730766189 35.0 33.0 40.0 18.0 41.0 47 33.3151530416497 35.0 33.0 40.0 18.0 41.0 48 33.232923211194844 35.0 33.0 40.0 18.0 41.0 49 33.19464625135088 35.0 33.0 40.0 18.0 41.0 50 33.00909844395697 35.0 33.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 1.0 13 2.0 14 6.0 15 24.0 16 89.0 17 281.0 18 680.0 19 1428.0 20 2567.0 21 4201.0 22 6637.0 23 10494.0 24 16293.0 25 26284.0 26 38850.0 27 46857.0 28 44736.0 29 41834.0 30 43344.0 31 48878.0 32 60211.0 33 79288.0 34 148985.0 35 273600.0 36 98313.0 37 121409.0 38 200394.0 39 391526.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.087130209141787 22.363498446299968 28.981996995106062 18.56737434945218 2 35.503261159256446 23.70509865482672 28.702828876269244 12.088811309647584 3 26.194884651318084 23.310069323430266 38.18183415679923 12.313211868452422 4 24.02034893086108 25.288496176521413 36.77041263109801 13.920742261519493 5 21.0029199602862 30.892711228521307 35.34446452262896 12.759904288563536 6 18.783222968401752 38.4725415369476 32.59255571208078 10.15167978256986 7 83.96798294298023 2.9445617570136156 12.011023801923015 1.0764314980831353 8 86.018749835258 1.8255462844457202 11.248085331958775 0.9076185483374971 9 82.22731173285146 4.035344113073045 12.25364116411817 1.4837029899573282 10 47.57725301148362 27.97966278412502 16.731167427652636 7.7119167767387236 11 41.985924444197124 17.775499863813288 29.158893285262838 11.079682406726745 12 38.13239691544416 20.0820634776522 29.77656592754867 12.008973679354973 13 19.089394130206212 38.633271146282105 29.809777913150953 12.467556810360733 14 13.993375175358699 39.77325644397454 32.79089042680623 13.442477953860527 15 12.521152871782407 22.19076097620979 52.34185500947449 12.946231142533307 16 14.758070893238404 17.9438442141148 50.195200955942866 17.10288393670393 17 15.527511180489862 17.363776677219917 34.193232838277545 32.91547930401267 18 20.406627167638522 21.48405443954042 38.92456427573563 19.18475411708543 19 25.758559993908207 22.499743734678994 32.549385988290865 19.192310283121927 20 28.67992607843769 21.331993919922212 31.193962096162466 18.794117905477634 21 21.19223413571226 25.787437434652343 33.42513977442794 19.59518865520746 22 21.177356103361323 21.743424231863003 32.400781389573076 24.678438275202595 23 17.420535784889427 27.994657966336987 31.205501357474013 23.379304891299572 24 17.775734163535347 22.304279191548808 43.978292130750965 15.941694514164883 25 15.341945800616793 23.843569790565336 41.203890546884836 19.610593861933033 26 16.04871091221668 31.777192679305184 33.50163863368117 18.672457774796964 27 15.968170382757885 32.60819521852842 34.21191824111199 17.211716157601707 28 13.323805144636147 26.492445298336765 44.224482563707554 15.95926699331953 29 14.22562477485261 22.152160097000085 43.06920920915058 20.55300591899673 30 16.765199462282137 27.834221231655064 37.50224781295854 17.898331493104266 31 26.069944324528542 24.624197889545254 31.327688662529322 17.978169123396878 32 27.189486971471077 24.347899942303695 32.2023295249866 16.260283561238627 33 26.11153252519454 26.258028426413777 29.621928110987778 18.0085109374039 34 18.82065234900115 26.60795506131331 32.27103791848127 22.30035467120427 35 19.200100748880487 25.64920059863579 34.358882741775346 20.791815910708376 36 28.6311917362488 24.33764932946348 29.619877988419734 17.411280945867976 37 19.730906769211845 30.52532926432816 31.568080177364887 18.175683789095103 38 19.89708384708429 31.35041573556933 27.712971125488 21.03952929185838 39 20.242851661917214 30.862193689722734 29.4798253295572 19.415129318802844 40 22.72619441605187 26.458413263707264 28.348860571164145 22.46653174907671 41 17.219038023916145 25.37079395389567 30.21189481113978 27.198273211048402 42 22.122111157645637 25.009093757962532 27.088035191818253 25.780759892573577 43 22.137750664093275 26.0588150877306 28.21694982764327 23.586484420532855 44 20.04451694719177 29.618472190087363 30.036345744384864 20.300665118336003 45 17.48608113213626 36.233456243062534 25.26096595917913 21.019496665622082 46 21.387757253772957 31.585066907214383 28.71354808855358 18.31362775045908 47 21.350269298243045 27.230723722553986 29.482871225944006 21.936135753258963 48 23.223964175572497 23.64060765632917 32.231499840383314 20.903928327715022 49 20.93263004366761 23.355757769232348 33.85326394156565 21.858348245534394 50 18.766763412926903 32.404295885404004 29.214539469252554 19.614401232416537 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 502.0 1 1167.5 2 1833.0 3 17285.0 4 32737.0 5 24632.5 6 16528.0 7 17432.5 8 18337.0 9 19066.5 10 19796.0 11 19512.0 12 19228.0 13 18061.0 14 16894.0 15 15498.5 16 14103.0 17 12719.0 18 11335.0 19 10540.5 20 9746.0 21 9641.5 22 9537.0 23 9540.5 24 9544.0 25 10507.0 26 11470.0 27 12548.0 28 13626.0 29 18846.5 30 24067.0 31 27800.5 32 31534.0 33 37207.5 34 42881.0 35 45841.0 36 48801.0 37 54209.5 38 59618.0 39 72582.5 40 85547.0 41 111084.0 42 136621.0 43 155802.0 44 174983.0 45 176721.0 46 178459.0 47 167085.0 48 155711.0 49 144759.5 50 133808.0 51 123010.5 52 112213.0 53 100071.0 54 87929.0 55 76807.5 56 65686.0 57 57834.5 58 49983.0 59 43779.0 60 37575.0 61 32309.0 62 27043.0 63 23023.5 64 19004.0 65 15843.5 66 12683.0 67 9947.5 68 7212.0 69 5835.5 70 4459.0 71 3560.5 72 2662.0 73 2117.5 74 1573.0 75 1298.0 76 1023.0 77 756.0 78 489.0 79 348.5 80 208.0 81 162.5 82 117.0 83 94.0 84 71.0 85 46.0 86 21.0 87 14.5 88 8.0 89 7.0 90 6.0 91 4.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1707215.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.01116744136689 #Duplication Level Percentage of deduplicated Percentage of total 1 80.27188179842702 15.26062185703507 2 6.961130512878612 2.646784355230869 3 2.3544851676297323 1.3428453528007085 4 1.2678277537971212 0.9641154285699658 5 0.8498951421951697 0.8078749427938345 6 0.6200575542792378 0.7072810792612216 7 0.49442144870975263 0.6579670263617009 8 0.40172186413866257 0.6109761299198524 9 0.32716150256935933 0.5597749895143748 >10 3.851137380490013 16.978134855109413 >50 1.2706588682600692 17.4994669685737 >100 1.325877352922913 40.32265196470679 >500 0.003119711418640382 0.3662352742170896 >1k 3.1197114186403823E-4 0.2244266036659866 >5k 0.0 0.0 >10k+ 3.1197114186403823E-4 1.050843172239416 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17718 1.0378306188734283 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3784 0.22164753707060916 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01675243012742976 0.0 2 0.0 0.0 0.0 0.10215467881901225 0.0 3 0.0 0.0 0.0 0.15534071572707597 0.0 4 0.0 0.0 0.0 0.2292037031071072 0.0 5 0.0 0.0 0.0 0.4019411731972833 0.0 6 0.0 0.0 0.0 0.5423452816429096 0.0 7 0.0 0.0 0.0 0.6354794211625366 0.0 8 0.0 0.0 0.0 0.8437718740756144 0.0 9 0.0 0.0 0.0 0.9369060135952414 0.0 10 0.0 0.0 0.0 1.1389895238736774 0.0 11 0.0 0.0 0.0 1.3313495956865422 0.0 12 0.0 0.0 0.0 1.4975266735589834 0.0 13 0.0 0.0 0.0 1.5630720208058153 0.0 14 0.0 0.0 0.0 1.5857990938458248 0.0 15 0.0 0.0 0.0 1.6263915206930586 0.0 16 0.0 0.0 0.0 1.722220107016398 0.0 17 0.0 0.0 0.0 1.8437045129055216 0.0 18 0.0 0.0 0.0 2.0219480264641536 0.0 19 0.0 0.0 0.0 2.0975682617596494 0.0 20 0.0 0.0 0.0 2.186192131629584 0.0 21 0.0 0.0 0.0 2.2909241073912776 0.0 22 0.0 0.0 0.0 2.397999080373591 0.0 23 0.0 0.0 0.0 2.52498952973117 0.0 24 0.0 0.0 0.0 2.6127347756433723 0.0 25 0.0 0.0 0.0 2.68794498642526 0.0 26 0.0 0.0 0.0 2.765732494149829 0.0 27 0.0 0.0 0.0 2.8516033422855354 0.0 28 0.0 0.0 0.0 2.943390258403306 0.0 29 0.0 0.0 0.0 3.029964005705198 0.0 30 0.0 0.0 0.0 3.156778730271231 0.0 31 0.0 0.0 0.0 3.2739285913022087 0.0 32 5.8574930515488676E-5 0.0 0.0 3.3706358015832802 0.0 33 5.8574930515488676E-5 0.0 0.0 3.4673430118643522 0.0 34 5.8574930515488676E-5 0.0 0.0 3.573422211027902 0.0 35 5.8574930515488676E-5 0.0 0.0 3.7157592921805396 0.0 36 5.8574930515488676E-5 0.0 0.0 3.831210480226568 0.0 37 5.8574930515488676E-5 0.0 0.0 3.9469545429251736 0.0 38 5.8574930515488676E-5 0.0 0.0 4.056079638475529 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCTA 30 2.5284426E-6 44.0 35 GTACCGA 35 1.4466423E-7 44.0 44 CGAACTA 20 7.8575575E-4 44.0 39 CGTATAA 20 7.8575575E-4 44.0 31 GCGAATC 20 7.8575575E-4 44.0 12 CTATCGG 20 7.8575575E-4 44.0 2 CTATCGA 20 7.8575575E-4 44.0 31 CGGTTGC 20 7.8575575E-4 44.0 20 CGTTGCA 30 2.5284426E-6 44.0 26 TAGCGAA 30 2.5284426E-6 44.0 43 GTTAGCG 140 0.0 44.0 1 AAGCGAT 50 2.7284841E-11 44.0 28 CGTTACG 20 7.8575575E-4 44.0 24 AAGCCCG 20 7.8575575E-4 44.0 38 CTACGCG 30 2.5284426E-6 44.0 1 CATACGT 20 7.8575575E-4 44.0 40 ACTAACG 40 8.3164196E-9 44.0 1 CGTACCA 20 7.8575575E-4 44.0 20 CGGTCCC 25 4.4437515E-5 44.0 12 ATACGCG 35 1.4466423E-7 44.0 1 >>END_MODULE