##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545939_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 787240 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.55389207865454 31.0 31.0 33.0 30.0 34.0 2 31.96188709923276 31.0 31.0 34.0 30.0 34.0 3 32.04170646816727 33.0 31.0 34.0 30.0 34.0 4 35.81582490727097 37.0 35.0 37.0 35.0 37.0 5 35.760267516894466 37.0 35.0 37.0 35.0 37.0 6 35.81896372135562 37.0 35.0 37.0 35.0 37.0 7 36.02370941517199 37.0 35.0 37.0 35.0 37.0 8 36.00750597022509 37.0 35.0 37.0 35.0 37.0 9 37.84353945429602 39.0 38.0 39.0 35.0 39.0 10 37.27673263553681 39.0 37.0 39.0 34.0 39.0 11 37.04581195061227 39.0 37.0 39.0 33.0 39.0 12 36.53589248513795 39.0 35.0 39.0 33.0 39.0 13 36.320272089832834 39.0 35.0 39.0 32.0 39.0 14 37.35305497688125 40.0 35.0 41.0 32.0 41.0 15 37.480623443930696 40.0 35.0 41.0 33.0 41.0 16 37.61306209034094 40.0 35.0 41.0 33.0 41.0 17 37.55288857273513 39.0 35.0 41.0 33.0 41.0 18 37.42967964026218 39.0 35.0 41.0 33.0 41.0 19 37.28523703063869 38.0 35.0 41.0 33.0 41.0 20 37.0908719069153 38.0 35.0 41.0 32.0 41.0 21 36.977048930440525 38.0 35.0 41.0 32.0 41.0 22 36.898156851785984 38.0 35.0 41.0 32.0 41.0 23 36.83499822163508 38.0 35.0 41.0 32.0 41.0 24 36.86768710939485 38.0 35.0 41.0 32.0 41.0 25 36.81916442253951 38.0 35.0 41.0 32.0 41.0 26 36.60175041918602 38.0 35.0 41.0 32.0 41.0 27 36.59147528072761 38.0 35.0 41.0 31.0 41.0 28 36.57283039479701 38.0 35.0 41.0 31.0 41.0 29 36.48594329556425 38.0 35.0 41.0 31.0 41.0 30 36.35987373609065 38.0 35.0 40.0 31.0 41.0 31 36.14429271886591 38.0 35.0 40.0 30.0 41.0 32 35.92147502667547 38.0 35.0 40.0 30.0 41.0 33 35.65116609928357 38.0 35.0 41.0 29.0 41.0 34 35.37815786799451 38.0 35.0 40.0 27.0 41.0 35 35.1349677353793 38.0 34.0 40.0 25.0 41.0 36 34.95290000508104 38.0 34.0 40.0 24.0 41.0 37 34.87189167217113 38.0 34.0 40.0 24.0 41.0 38 34.77350617346679 38.0 34.0 40.0 23.0 41.0 39 34.652953356028654 37.0 34.0 40.0 23.0 41.0 40 34.50072658909608 37.0 34.0 40.0 23.0 41.0 41 34.43302169605203 37.0 34.0 40.0 23.0 41.0 42 34.4187312636553 37.0 34.0 40.0 23.0 41.0 43 34.31307352268686 37.0 34.0 40.0 23.0 41.0 44 34.16933717798892 37.0 33.0 40.0 22.0 41.0 45 34.06840099588435 36.0 33.0 40.0 22.0 41.0 46 34.02339820131091 36.0 33.0 40.0 22.0 41.0 47 33.97017173924089 36.0 33.0 40.0 22.0 41.0 48 33.86599766272039 36.0 33.0 40.0 22.0 41.0 49 33.814548295310196 36.0 33.0 40.0 22.0 41.0 50 33.67795843707129 35.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 1.0 12 0.0 13 1.0 14 9.0 15 17.0 16 45.0 17 154.0 18 275.0 19 549.0 20 1032.0 21 1723.0 22 2786.0 23 4174.0 24 6232.0 25 9662.0 26 14292.0 27 17594.0 28 18074.0 29 17602.0 30 18758.0 31 21515.0 32 27218.0 33 34899.0 34 61569.0 35 96292.0 36 54152.0 37 70935.0 38 112240.0 39 195435.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.73118743966262 21.580966414308218 29.078552919058993 16.609293226970173 2 34.69818606778111 23.569559473603984 29.473222905340172 12.259031553274733 3 27.4955540876988 23.6697830394797 35.932244296529646 12.902418576291854 4 24.4855444337178 26.089629591992274 35.045729383669524 14.379096590620396 5 21.463721355622173 30.604390020832273 34.120471520756055 13.811417102789491 6 19.45239063055739 40.41651846958996 30.246430567552462 9.884660332300188 7 85.88130684416441 3.0610741324119712 9.879706315735989 1.1779127076876175 8 87.80333824500788 1.7657893399725626 9.396753213759464 1.0341192012600986 9 84.53508459935979 3.1663787409176365 10.462628931456736 1.8359077282658403 10 43.912656877191196 23.22620801788527 18.95724302626899 13.90389207865454 11 37.3450281997866 22.87282150297241 24.658553935267516 15.123596361973476 12 35.17783649204817 20.70575682129973 28.135765459072203 15.9806412275799 13 23.067806513896652 30.00101620852599 28.88433006452924 18.046847213048117 14 18.883821960266246 31.959377064173566 31.063716274579544 18.09308470098064 15 18.163838219602663 22.73106041359687 41.49192114221839 17.613180224582084 16 20.38920786545399 18.587851227071795 40.782099486814694 20.24084142065952 17 21.18858289721051 19.38151008586962 31.148696712565417 28.281210304354452 18 23.349042223464256 22.845891977033688 33.81141710278949 19.993648696712565 19 27.25166404146131 24.184746710024896 28.254788882678728 20.30880036583507 20 27.890859204308725 22.690666124688786 28.86121132056298 20.557263350439513 21 23.60982673644632 24.869671256541842 31.740384126822825 19.780117880189017 22 23.405568822722422 21.27966058635232 31.073370255576442 24.241400335348814 23 21.33974391545145 25.977211523804684 29.311645749707836 23.371398811036023 24 20.958665718205378 23.56587571769727 36.42662974442356 19.048828819673798 25 20.98762766119608 23.383847365479397 34.07270972003455 21.555815253289975 26 19.583989634673035 27.940018291753464 29.712285961079214 22.763706112494283 27 19.149814541944007 28.08546313703572 32.17125654184238 20.59346577917789 28 17.83687312636553 25.89540673746253 36.458513286926475 19.809206849245463 29 19.048701793608046 23.39210405975306 36.03729485290382 21.521899293735075 30 21.627712006503735 26.007062649255623 32.79647883745745 19.568746506783192 31 26.69922768152025 24.632513591789035 29.09443117727758 19.57382754941314 32 26.69236827396982 24.858874040953204 29.17166302525278 19.277094659824197 33 25.805853361109698 25.26421421675728 28.358188100198163 20.57174432193486 34 20.491717900513184 25.64580051826635 30.948503632945478 22.913977948274987 35 21.71675727859357 24.774147655098826 31.38051928255678 22.128575783750826 36 26.970936436156702 25.489050353132463 27.992734109039176 19.547279101671663 37 21.383059803871753 28.997383263045577 29.168614399674812 20.450942533407858 38 22.153853970834817 28.468573751333775 27.309333875311214 22.068238402520198 39 21.679157563131955 28.181621868807476 27.425181647274023 22.714038920786546 40 23.69620446115543 25.10606676490016 28.492581677760278 22.705147096184135 41 20.287841064986537 23.992683298612874 29.416061175753267 26.303414460647325 42 22.670214928103245 25.142142167572786 27.079162644174588 25.108480260149385 43 22.328514811239266 25.930592957674914 27.540267262842335 24.200624968243485 44 21.90691529901936 27.27656115034805 29.102687871551243 21.71383567908135 45 20.486001727554495 30.371551242314922 26.311036024592244 22.831411005538335 46 22.404222346425488 28.45815761394238 27.927569737310098 21.21005030232204 47 22.172907880697117 27.12438392358112 28.884965194857987 21.817743000863775 48 22.2714801077181 25.716045932625377 30.176820283522176 21.835653676134342 49 21.710787053503378 25.300162593364156 30.59994410853107 22.389106244601393 50 20.92614704537371 28.10362786443778 29.357375133377367 21.612849956811136 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 274.0 1 790.5 2 1307.0 3 8454.5 4 15602.0 5 11065.0 6 6528.0 7 6448.0 8 6368.0 9 6341.5 10 6315.0 11 6179.5 12 6044.0 13 5558.5 14 5073.0 15 4649.5 16 4226.0 17 3869.5 18 3513.0 19 3287.0 20 3061.0 21 2890.5 22 2720.0 23 2990.0 24 3260.0 25 3753.5 26 4247.0 27 5121.0 28 5995.0 29 6639.5 30 7284.0 31 9788.0 32 12292.0 33 14796.5 34 17301.0 35 19131.5 36 20962.0 37 22440.5 38 23919.0 39 27830.0 40 31741.0 41 39867.0 42 47993.0 43 53288.0 44 58583.0 45 60110.5 46 61638.0 47 60681.5 48 59725.0 49 60865.0 50 62005.0 51 59454.5 52 56904.0 53 53239.5 54 49575.0 55 45735.5 56 41896.0 57 40442.0 58 38988.0 59 36641.0 60 34294.0 61 30301.0 62 26308.0 63 23587.0 64 20866.0 65 17463.0 66 14060.0 67 11941.5 68 9823.0 69 8046.5 70 6270.0 71 5337.0 72 4404.0 73 3574.0 74 2744.0 75 2134.0 76 1524.0 77 1189.5 78 855.0 79 602.0 80 349.0 81 277.5 82 206.0 83 157.0 84 108.0 85 78.5 86 49.0 87 37.0 88 25.0 89 15.5 90 6.0 91 4.5 92 3.0 93 4.0 94 5.0 95 3.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 787240.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.510553937522516 #Duplication Level Percentage of deduplicated Percentage of total 1 72.04946560361559 17.659723128470933 2 7.194224177980386 3.5266883950603365 3 3.3885593874156044 2.4916640290724525 4 2.1602769294871984 2.11798336800726 5 1.5101521069907011 1.8507332336129427 6 1.1766989911892503 1.7304926455063472 7 1.0071606955675638 1.7280246586723027 8 0.8307219348538181 1.628916383305406 9 0.7034437608311328 1.5517616617678653 >10 9.149176571034277 50.74071642783665 >50 0.7872006563152326 12.093584147738955 >100 0.04187237533585813 1.6059265748845797 >500 0.0 0.0 >1k 5.234046916982266E-4 0.1345755693444579 >5k 5.234046916982266E-4 1.1392097767195293 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8880 1.1279914638483817 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1049 0.13325034297037752 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020070118388293277 0.0 2 0.0 0.0 0.0 0.06554544992632488 0.0 3 0.0 0.0 0.0 0.0926020019307962 0.0 4 0.0 0.0 0.0 0.1286774046034246 0.0 5 0.0 0.0 0.0 0.21010111274833596 0.0 6 0.0 0.0 0.0 0.2955896549972054 0.0 7 0.0 0.0 0.0 0.3464000812966821 0.0 8 0.0 0.0 0.0 0.4702504954016564 0.0 9 0.0 0.0 0.0 0.5313500330267771 0.0 10 0.0 0.0 0.0 0.6590112291042122 0.0 11 0.0 0.0 0.0 0.8162694985010924 0.0 12 0.0 0.0 0.0 0.9208119506122656 0.0 13 0.0 0.0 0.0 0.9641278390325695 0.0 14 0.0 0.0 0.0 0.9850871398811036 0.0 15 0.0 0.0 0.0 1.014176108937554 0.0 16 0.0 0.0 0.0 1.077562115746151 0.0 17 0.0 0.0 0.0 1.1527615466693766 0.0 18 0.0 0.0 0.0 1.2546364513998272 0.0 19 1.2702606574869162E-4 0.0 0.0 1.3012550175295972 0.0 20 1.2702606574869162E-4 0.0 0.0 1.3570194603932726 0.0 21 1.2702606574869162E-4 0.0 0.0 1.4282810832782886 0.0 22 1.2702606574869162E-4 0.0 0.0 1.5062750876479853 0.0 23 1.2702606574869162E-4 0.0 0.0 1.6000203241705198 0.0 24 1.2702606574869162E-4 0.0 0.0 1.6679792693460698 0.0 25 1.2702606574869162E-4 0.0 0.0 1.7220923733550124 0.0 26 1.2702606574869162E-4 0.0 0.0 1.7830648849143844 0.0 27 1.2702606574869162E-4 0.0 0.0 1.8554697423911386 0.0 28 1.2702606574869162E-4 0.0 0.0 1.9244448960926783 0.0 29 1.2702606574869162E-4 0.0 0.0 2.003201056856867 0.0 30 1.2702606574869162E-4 0.0 0.0 2.0925003810781972 0.0 31 1.2702606574869162E-4 0.0 0.0 2.1671917077384277 0.0 32 1.2702606574869162E-4 0.0 0.0 2.2416289822671613 0.0 33 1.2702606574869162E-4 0.0 0.0 2.317209491387633 0.0 34 1.2702606574869162E-4 0.0 0.0 2.40193587724201 0.0 35 1.2702606574869162E-4 1.2702606574869162E-4 0.0 2.5038107819724607 0.0 36 1.2702606574869162E-4 1.2702606574869162E-4 0.0 2.590188506681571 0.0 37 1.2702606574869162E-4 1.2702606574869162E-4 0.0 2.6802499872973935 0.0 38 1.2702606574869162E-4 1.2702606574869162E-4 0.0 2.7872059346577918 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 25 4.4415574E-5 44.0 1 AAGCGTA 20 7.854968E-4 44.0 28 TTGCGGT 20 7.854968E-4 44.0 17 CGTTTTT 5670 0.0 43.18519 1 CGAGGGT 115 0.0 42.086952 4 TATAGCG 90 0.0 41.555557 1 TCACGAC 215 0.0 40.930233 25 CACGACG 210 0.0 40.857143 26 CATACGA 330 0.0 40.666668 18 ACATACG 335 0.0 40.059704 17 TTAATCG 165 0.0 40.0 20 CGTTGAT 165 0.0 40.0 25 ACGTTTG 50 1.3460522E-9 39.600002 1 ACGTAAG 50 1.3460522E-9 39.600002 1 CGGGTAT 95 0.0 39.368423 6 TCGAAGG 135 0.0 39.11111 2 TATGGGC 265 0.0 39.018867 4 CGACGGT 220 0.0 39.000004 28 ATACGAA 345 0.0 38.898552 19 CCGCTCG 85 0.0 38.823532 19 >>END_MODULE