##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545927_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 970826 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.551108025537015 31.0 31.0 33.0 30.0 34.0 2 31.943401804236803 31.0 31.0 34.0 30.0 34.0 3 31.936032821535477 33.0 31.0 34.0 30.0 34.0 4 35.71677622972603 37.0 35.0 37.0 33.0 37.0 5 35.67065261952193 37.0 35.0 37.0 33.0 37.0 6 35.734280911306456 37.0 35.0 37.0 33.0 37.0 7 36.00092395547709 37.0 35.0 37.0 35.0 37.0 8 35.99017228627993 37.0 35.0 37.0 35.0 37.0 9 37.819760698621586 39.0 38.0 39.0 35.0 39.0 10 37.362706602418974 39.0 37.0 39.0 35.0 39.0 11 36.969110839635526 39.0 37.0 39.0 33.0 39.0 12 35.66319402240978 37.0 35.0 39.0 32.0 39.0 13 35.12657572005694 35.0 35.0 39.0 30.0 39.0 14 36.013660532371404 37.0 35.0 41.0 31.0 41.0 15 36.368281236802474 37.0 35.0 41.0 32.0 41.0 16 36.65219926124764 37.0 35.0 41.0 32.0 41.0 17 36.58976170807127 36.0 35.0 41.0 32.0 41.0 18 36.461383399290916 36.0 35.0 40.0 32.0 41.0 19 36.22693458972051 36.0 35.0 40.0 32.0 41.0 20 35.921744988288324 35.0 35.0 40.0 32.0 41.0 21 35.71336573186132 35.0 35.0 40.0 31.0 41.0 22 35.58572287928012 35.0 35.0 40.0 31.0 41.0 23 35.59817825233358 35.0 35.0 40.0 31.0 41.0 24 35.59013973667784 35.0 35.0 40.0 31.0 41.0 25 35.545223345893085 35.0 35.0 40.0 31.0 41.0 26 35.28750981123291 35.0 35.0 40.0 31.0 41.0 27 35.24046327560242 35.0 34.0 40.0 30.0 41.0 28 35.24466073220124 35.0 34.0 40.0 30.0 41.0 29 35.23934155039111 35.0 35.0 40.0 30.0 41.0 30 35.137341809963885 35.0 35.0 40.0 30.0 41.0 31 34.76309142936015 35.0 34.0 40.0 29.0 41.0 32 34.352978803616715 35.0 34.0 40.0 27.0 41.0 33 33.9676584681498 35.0 33.0 40.0 23.0 41.0 34 33.66475454921891 35.0 34.0 40.0 23.0 41.0 35 33.361813548462855 35.0 33.0 39.0 21.0 41.0 36 33.08793027792828 35.0 33.0 39.0 18.0 41.0 37 32.97111943849876 35.0 33.0 39.0 18.0 41.0 38 32.95601786519933 35.0 33.0 39.0 18.0 41.0 39 32.8950131125454 35.0 33.0 39.0 18.0 41.0 40 32.674247496461774 35.0 32.0 39.0 18.0 41.0 41 32.692194069792116 35.0 33.0 39.0 18.0 41.0 42 32.61183466450219 35.0 32.0 39.0 18.0 41.0 43 32.460911636070726 35.0 32.0 39.0 17.0 41.0 44 32.33325539283044 35.0 32.0 38.0 16.0 41.0 45 32.262022236734495 35.0 32.0 38.0 17.0 41.0 46 32.246176966830305 35.0 32.0 38.0 17.0 41.0 47 32.193199399274434 35.0 32.0 38.0 17.0 41.0 48 32.142795928415595 35.0 32.0 38.0 15.0 41.0 49 32.144255510256215 35.0 32.0 38.0 15.0 40.0 50 31.9158520682388 35.0 32.0 37.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 8.0 15 36.0 16 85.0 17 234.0 18 536.0 19 1091.0 20 2149.0 21 3291.0 22 5077.0 23 7561.0 24 11597.0 25 17206.0 26 24655.0 27 29682.0 28 29264.0 29 27617.0 30 29058.0 31 32397.0 32 39033.0 33 52752.0 34 107639.0 35 204638.0 36 49544.0 37 58075.0 38 86698.0 39 150902.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.44373966086611 21.80565827450027 27.502765686127074 19.24783637850655 2 35.9801859447522 23.690136028495324 28.45885874502743 11.870819281725046 3 27.129475312774893 23.323953004966906 36.81298193497084 12.733589747287361 4 23.790462966587214 25.51126566449601 36.641066473291815 14.057204895624963 5 21.403011456223876 30.6533817594502 35.34680776987844 12.596799014447491 6 18.81521508488648 38.41213564531646 32.52776501659412 10.244884253202944 7 82.49356733338415 3.8292134738871844 12.371835941765054 1.3053832509636125 8 84.90501902503641 2.2616823200037905 11.881222793785911 0.952075861173887 9 82.46029669580336 3.044520851316302 12.822277112479478 1.6729053404008547 10 60.11252273836918 16.033151151699688 16.463815348991478 7.390510760939653 11 55.510565230020624 14.245498163419605 21.077927455589364 9.16600915097041 12 48.43586801342362 18.531127102075963 23.86555366255127 9.167451221949143 13 18.311211277819094 46.77923747406847 24.317230894104608 10.592320354007825 14 11.869686225956041 46.92365058208165 30.291524948857983 10.915138243104327 15 10.399288852997344 18.653909145408136 59.8914738583433 11.055328143251211 16 11.74443206094604 12.888303362291492 57.50052017560304 17.866744401159426 17 12.524489455370993 13.84697154793959 32.780230442942404 40.84830855374702 18 21.45585305708747 19.571375303092417 39.42158533042996 19.551186309390147 19 29.29783503944064 21.143541685121743 29.69327150282337 19.865351772614247 20 32.79125198542272 19.484542029158675 28.297140785269452 19.42706520014915 21 20.269646672009195 25.976333555137582 32.492434277615146 21.261585495238077 22 21.0405366152122 21.438342195202846 30.010115097865114 27.511006091719835 23 17.385710724681868 28.32196500711765 28.315578692783262 25.97674557541722 24 19.031113711416875 19.67489539835151 45.45994853866707 15.834042351564545 25 13.630454890989736 21.05845949737646 43.75758374827209 21.553501863361717 26 13.745202538868964 34.6565707964146 32.440416717310825 19.15780994740561 27 15.431395533288148 33.58974728736148 34.64936044152093 16.329496737829434 28 11.819007731560548 26.850640588529767 46.66150267916187 14.668849000747816 29 12.275011176050086 20.927334043381617 46.316332689895 20.481322090673302 30 16.024395720757376 28.404884088394834 38.39802395073886 17.17269624010894 31 31.44734483831294 23.86730474873973 26.95117353676148 17.734176876185845 32 31.253283286603367 25.11655023660265 29.106142604338984 14.524023872455002 33 28.1993889739253 27.259982736350285 26.86361922733837 17.677009062386052 34 18.082024997270366 27.542731653251973 30.2064427611127 24.16880058836496 35 17.968307400090232 25.596347852241287 33.49096542531824 22.944379322350247 36 32.496451475341615 21.953676559960282 28.85862142134636 16.691250543351742 37 19.224660237776902 31.781493285099494 31.49925939354735 17.494587083576256 38 19.503803977231758 32.96666961947867 24.50799628357708 23.02153011971249 39 19.881935588869684 31.09733361076032 29.557819835892325 19.462910964477672 40 23.70424772307293 25.551849662040365 26.320885513984997 24.423017100901706 41 16.405514479422678 22.735279030433876 29.467896409861293 31.391310080282153 42 23.883991570065078 23.45034022574591 24.76107974034482 27.90458846384419 43 23.476194498293207 25.304534489187557 25.389616676932842 25.8296543355864 44 18.322953855788782 31.732462871822552 28.855325259109254 21.089258013279412 45 15.710642277812914 40.62622962302205 22.044527031620493 21.618601067544542 46 22.512891084499177 32.99540803398343 26.15442932101118 18.337271560506206 47 21.669279561940037 27.01153450772847 27.713205043952264 23.60598088637923 48 24.736976553985986 21.99024335977817 31.916635936820807 21.356144149415034 49 20.572172562333517 21.87106649389283 33.86610988992878 23.690651053844867 50 18.91791113958629 33.221813177644606 27.813634987114067 20.04664069565504 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 461.0 1 861.5 2 1262.0 3 10676.0 4 20090.0 5 14929.0 6 9768.0 7 10487.0 8 11206.0 9 11870.5 10 12535.0 11 12260.5 12 11986.0 13 11157.5 14 10329.0 15 9301.0 16 8273.0 17 7413.5 18 6554.0 19 5945.0 20 5336.0 21 4737.0 22 4138.0 23 4134.0 24 4130.0 25 4252.0 26 4374.0 27 4310.0 28 4246.0 29 5861.5 30 7477.0 31 9017.5 32 10558.0 33 11559.5 34 12561.0 35 13527.0 36 14493.0 37 15414.5 38 16336.0 39 27521.5 40 38707.0 41 63025.0 42 87343.0 43 102444.0 44 117545.0 45 115283.5 46 113022.0 47 97498.5 48 81975.0 49 77658.5 50 73342.0 51 67427.0 52 61512.0 53 56866.5 54 52221.0 55 43883.5 56 35546.0 57 33407.0 58 31268.0 59 28347.0 60 25426.0 61 24021.0 62 22616.0 63 20283.5 64 17951.0 65 14873.0 66 11795.0 67 10224.0 68 8653.0 69 7239.0 70 5825.0 71 4987.5 72 4150.0 73 3321.5 74 2493.0 75 2049.5 76 1606.0 77 1226.0 78 846.0 79 659.0 80 472.0 81 359.5 82 247.0 83 157.0 84 67.0 85 46.0 86 25.0 87 23.5 88 22.0 89 16.5 90 11.0 91 9.5 92 8.0 93 13.0 94 18.0 95 9.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 970826.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.816620347432504 #Duplication Level Percentage of deduplicated Percentage of total 1 79.42635757281809 17.32814688745593 2 7.67725289535058 3.3498342345818113 3 2.967291075002504 1.942087885309635 4 1.6429891529883878 1.4337788234278943 5 1.0724138171434965 1.1698222551980284 6 0.7375190516321818 0.9654103889074669 7 0.505441080282163 0.7718911309558474 8 0.37210133172226767 0.6494394787967006 9 0.2658830415896213 0.5220602437663238 >10 2.8366461700993013 15.30870254937512 >50 1.4260725171615063 22.48619520986997 >100 1.0681206688518115 32.49408891503872 >500 9.558126790620236E-4 0.10780795410999355 >1k 4.779063395310118E-4 0.2666005209470537 >5k 0.0 0.0 >10k+ 4.779063395310118E-4 1.2041335222594929 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11549 1.1896055523852884 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2557 0.2633839637586962 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0300506990954095E-4 0.0 0.0 0.036257784608158414 0.0 2 1.0300506990954095E-4 0.0 0.0 0.10897936396429432 0.0 3 1.0300506990954095E-4 0.0 0.0 0.15182947304666336 0.0 4 1.0300506990954095E-4 0.0 0.0 0.21311748964284022 0.0 5 1.0300506990954095E-4 0.0 0.0 0.3652559778992322 0.0 6 1.0300506990954095E-4 0.0 0.0 0.4834027930854757 0.0 7 1.0300506990954095E-4 0.0 0.0 0.5592145245388978 0.0 8 1.0300506990954095E-4 0.0 0.0 0.7446236503760715 0.0 9 1.0300506990954095E-4 0.0 0.0 0.8081777785102583 0.0 10 1.0300506990954095E-4 0.0 0.0 0.9665995760311322 0.0 11 1.0300506990954095E-4 0.0 0.0 1.110909678974399 0.0 12 1.0300506990954095E-4 0.0 0.0 1.259030969504319 0.0 13 1.0300506990954095E-4 0.0 0.0 1.3158897680943855 0.0 14 1.0300506990954095E-4 0.0 0.0 1.335563736447108 0.0 15 7.210354893667866E-4 0.0 0.0 1.374396647803005 0.0 16 7.210354893667866E-4 0.0 0.0 1.4478392626485075 0.0 17 7.210354893667866E-4 0.0 0.0 1.5436339776643806 0.0 18 7.210354893667866E-4 0.0 0.0 1.7019527701153452 0.0 19 7.210354893667866E-4 0.0 0.0 1.757884523076226 0.0 20 7.210354893667866E-4 0.0 0.0 1.8169064281343927 0.0 21 7.210354893667866E-4 0.0 0.0 1.894469245776277 0.0 22 7.210354893667866E-4 0.0 0.0 1.9693539316005133 0.0 23 7.210354893667866E-4 0.0 0.0 2.0630885452181955 0.0 24 8.240405592763276E-4 0.0 0.0 2.125612622653287 0.0 25 8.240405592763276E-4 0.0 0.0 2.1820594009637153 0.0 26 8.240405592763276E-4 0.0 0.0 2.2428323922103446 0.0 27 8.240405592763276E-4 0.0 0.0 2.296601038703125 0.0 28 8.240405592763276E-4 0.0 0.0 2.35830107557894 0.0 29 8.240405592763276E-4 0.0 0.0 2.4158809096583735 0.0 30 8.240405592763276E-4 0.0 0.0 2.510439563835332 0.0 31 8.240405592763276E-4 0.0 0.0 2.6034531419636475 0.0 32 8.240405592763276E-4 0.0 0.0 2.6853421725417324 0.0 33 8.240405592763276E-4 0.0 0.0 2.758887792457145 0.0 34 8.240405592763276E-4 0.0 0.0 2.834905534050386 0.0 35 8.240405592763276E-4 0.0 0.0 2.965000937346136 0.0 36 8.240405592763276E-4 0.0 0.0 3.0595595915230946 0.0 37 8.240405592763276E-4 0.0 0.0 3.1467018806665665 0.0 38 8.240405592763276E-4 0.0 0.0 3.223028637469536 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTACG 30 2.5273075E-6 44.0 1 AACGTAG 55 1.8189894E-12 44.0 1 AAACTCG 20 7.855878E-4 44.0 1 CTATGCG 35 1.4457692E-7 44.0 1 AATCCGG 25 4.4423276E-5 44.0 2 GCAAGCG 35 1.4457692E-7 44.0 1 CATATTG 30 2.5273075E-6 44.0 1 CGTATGA 35 1.4457692E-7 44.0 36 CTGTACG 35 1.4457692E-7 44.0 1 GTCGAAT 20 7.855878E-4 44.0 22 GTACACG 20 7.855878E-4 44.0 1 ACGTTCA 25 4.4423276E-5 44.0 44 ACGTTAG 20 7.855878E-4 44.0 1 GGGTATA 30 2.5273075E-6 44.0 7 CGCATCG 20 7.855878E-4 44.0 21 GCACGAC 20 7.855878E-4 44.0 38 CGTCTTA 20 7.855878E-4 44.0 22 CGCGATC 20 7.855878E-4 44.0 42 CTAAGCG 20 7.855878E-4 44.0 1 CACGAGG 55 1.8189894E-12 44.0 2 >>END_MODULE