##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545924_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1255229 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4873166569606 31.0 31.0 33.0 30.0 34.0 2 31.884041079356834 31.0 31.0 34.0 30.0 34.0 3 31.96008616754393 33.0 31.0 34.0 30.0 34.0 4 35.72171293046926 37.0 35.0 37.0 33.0 37.0 5 35.64851035149761 37.0 35.0 37.0 33.0 37.0 6 35.69799534586916 37.0 35.0 37.0 33.0 37.0 7 35.97267590216606 37.0 35.0 37.0 35.0 37.0 8 35.97075195044091 37.0 35.0 37.0 35.0 37.0 9 37.80447711134781 39.0 38.0 39.0 35.0 39.0 10 37.261954591552616 39.0 37.0 39.0 34.0 39.0 11 36.90285278622466 39.0 37.0 39.0 33.0 39.0 12 35.84341821293167 37.0 35.0 39.0 32.0 39.0 13 35.38368696070597 37.0 35.0 39.0 31.0 39.0 14 36.23566695798137 38.0 35.0 41.0 31.0 41.0 15 36.55608896862644 38.0 35.0 41.0 31.0 41.0 16 36.79768870859421 38.0 35.0 41.0 32.0 41.0 17 36.75711842221619 38.0 35.0 41.0 32.0 41.0 18 36.684833604067464 38.0 35.0 40.0 32.0 41.0 19 36.52794589672482 37.0 35.0 40.0 32.0 41.0 20 36.29541143488559 36.0 35.0 40.0 32.0 41.0 21 36.1414036801253 36.0 35.0 40.0 31.0 41.0 22 36.03543656177478 36.0 35.0 40.0 31.0 41.0 23 36.03237656236432 35.0 35.0 40.0 31.0 41.0 24 36.03778912055091 35.0 35.0 40.0 31.0 41.0 25 35.983250864981606 35.0 35.0 40.0 31.0 41.0 26 35.7535095189802 35.0 35.0 40.0 31.0 41.0 27 35.732210616548855 35.0 35.0 40.0 31.0 41.0 28 35.74188932856077 36.0 35.0 40.0 31.0 41.0 29 35.73723121438399 36.0 35.0 40.0 31.0 41.0 30 35.62302416531167 36.0 35.0 40.0 30.0 41.0 31 35.362759305274174 35.0 34.0 40.0 30.0 41.0 32 35.130652653818544 35.0 34.0 40.0 29.0 41.0 33 34.87048339386678 35.0 34.0 40.0 27.0 41.0 34 34.63739046819345 35.0 34.0 40.0 26.0 41.0 35 34.400087155411484 35.0 34.0 40.0 24.0 41.0 36 34.16944796527167 35.0 33.0 40.0 23.0 41.0 37 34.05802287869385 35.0 33.0 40.0 23.0 41.0 38 33.99686033385143 35.0 33.0 40.0 23.0 41.0 39 33.93145314520299 35.0 33.0 40.0 23.0 41.0 40 33.7753350185504 35.0 33.0 40.0 23.0 41.0 41 33.751894674198894 35.0 33.0 40.0 22.0 41.0 42 33.71488310101185 35.0 33.0 40.0 23.0 41.0 43 33.605145355947 35.0 33.0 40.0 22.0 41.0 44 33.49514630398119 35.0 33.0 40.0 22.0 41.0 45 33.39227742507543 35.0 33.0 39.0 22.0 41.0 46 33.38152321209915 35.0 33.0 39.0 22.0 41.0 47 33.321772361855885 35.0 33.0 39.0 22.0 41.0 48 33.243888565353416 35.0 33.0 39.0 22.0 41.0 49 33.21447321564432 35.0 33.0 39.0 21.0 41.0 50 33.0269146108001 35.0 33.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 14.0 14 16.0 15 32.0 16 113.0 17 268.0 18 680.0 19 1239.0 20 2182.0 21 3596.0 22 5443.0 23 7971.0 24 11854.0 25 17546.0 26 24401.0 27 30248.0 28 31301.0 29 31264.0 30 34074.0 31 40375.0 32 50101.0 33 66091.0 34 127568.0 35 228183.0 36 73610.0 37 90638.0 38 139678.0 39 236739.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.91558751431013 22.42204410509955 28.608883319298712 16.053485061291607 2 33.78690262892269 23.771518981795353 29.985763553901318 12.455814835380636 3 28.0183137897547 23.470538045249114 34.999032049132076 13.512116115864117 4 24.636540424097912 27.144130672570505 33.98128946988956 14.238039433442026 5 21.585384021561005 31.54954195608929 33.540334074499555 13.324739947850153 6 19.028878395894296 40.850633629401486 29.941229847302765 10.179258127401454 7 86.6585300371486 3.345285999606446 8.946893355714376 1.0492906075305781 8 88.99627079998949 1.644082474193952 8.29984010885663 1.0598066169599332 9 86.30218071762205 2.660789385841149 9.417564444416119 1.6194654521206886 10 55.69182993700751 17.924458405597704 15.494144893083254 10.889566764311533 11 50.57626935005485 18.644486384556124 19.441074098829773 11.33817016655925 12 45.45576942533992 19.123203813806086 23.174177779512743 12.246848981341254 13 21.456323905837102 40.75726421234691 23.659188881072694 14.12722300074329 14 15.076053851528288 42.14920146045064 29.209490857843466 13.565253830177602 15 14.116149324147228 21.043172202044406 50.69616779089712 14.144510682911246 16 16.022176033217843 15.043788822597312 49.82588834387988 19.108146800304965 17 17.23789045664178 15.878696237897627 29.632202570208303 37.25121073525229 18 22.593407258755175 20.87850105438928 36.39885630430782 20.129235382547726 19 29.45024374038522 22.467374479079115 27.523981679836908 20.558400100698755 20 31.286960387307815 21.592952361680616 25.950483935600595 21.169603315410974 21 22.0459374345239 26.717276289824405 30.591310430208352 20.645475845443343 22 22.565683233895967 21.547223654010544 28.318179391967526 27.56891372012597 23 19.70644400344479 28.40597213735502 26.899553786599895 24.9880300726003 24 19.84466579405033 22.477651488294168 40.59952407090658 17.07815864674892 25 17.962539106410066 21.731652152714766 39.00379930674004 21.302009434135126 26 16.23265555528115 32.44937776294206 29.544728491773213 21.77323819000358 27 17.05577229334249 32.53278883773399 31.39379348310149 19.01764538582203 28 14.54690737706028 26.565590820479766 41.434670486421204 17.452831316038747 29 15.758558796841054 22.927609225089604 39.92211779683229 21.39171418123705 30 19.133958823449746 27.960157070940838 34.00925249496307 18.896631610646345 31 30.30443050630602 24.016494201456467 27.118398316163823 18.56067697607369 32 31.21772999189789 24.20108203363689 27.483271976667208 17.09791599779801 33 28.455524848453944 25.33338538226889 26.717196623086302 19.493893146190857 34 19.26190360484023 26.55523414452662 29.681197614140526 24.501664636492624 35 20.194721441266893 24.327353813527253 32.696902318222406 22.781022426983444 36 31.75842814339057 22.92450222230366 26.258475545099742 19.058594089206032 37 20.598552136701752 30.5131573601311 29.243827221965073 19.644463281202075 38 21.110729595954204 32.351786008768116 24.300984123215763 22.23650027206191 39 20.423046312664862 30.138723691055574 26.93500548505492 22.503224511224644 40 24.36288517872038 24.056964904411863 25.736499077060838 25.84365083980692 41 18.324704097818007 22.38213106931086 28.033052136303414 31.260112696567717 42 22.40180875362185 24.435222576916242 24.789341227775967 28.37362744168594 43 22.606472603803766 25.18695791763893 26.199442492166767 26.00712698639053 44 20.2563038298191 28.56299527815243 29.095408088882586 22.08529280314588 45 18.315781423150675 36.114366382548525 23.184375121989692 22.385477072311108 46 23.25137484873278 30.919617057923293 26.506478100808696 19.322529992535227 47 21.995986389734462 26.60908885948301 27.12015098440205 24.274773766380477 48 23.14892342353467 24.07895292412779 30.548768392062325 22.223355260275216 49 22.141935853935816 22.002837729211162 32.9195708512152 22.935655565637823 50 20.1275623810476 31.142843258082785 27.157913018262008 21.571681342607604 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 299.0 1 871.0 2 1443.0 3 10289.5 4 19136.0 5 13696.5 6 8257.0 7 8571.0 8 8885.0 9 9399.5 10 9914.0 11 9835.0 12 9756.0 13 9081.5 14 8407.0 15 7709.0 16 7011.0 17 6229.0 18 5447.0 19 5140.5 20 4834.0 21 4402.0 22 3970.0 23 4028.0 24 4086.0 25 4040.0 26 3994.0 27 5057.5 28 6121.0 29 6451.0 30 6781.0 31 9630.5 32 12480.0 33 15550.0 34 18620.0 35 21211.0 36 23802.0 37 25428.0 38 27054.0 39 39211.0 40 51368.0 41 73632.5 42 95897.0 43 113724.5 44 131552.0 45 132067.0 46 132582.0 47 119455.0 48 106328.0 49 104649.5 50 102971.0 51 98522.5 52 94074.0 53 83781.0 54 73488.0 55 69131.5 56 64775.0 57 59304.0 58 53833.0 59 48570.0 60 43307.0 61 39918.0 62 36529.0 63 31010.5 64 25492.0 65 21952.0 66 18412.0 67 15467.5 68 12523.0 69 10518.0 70 8513.0 71 7053.0 72 5593.0 73 4519.5 74 3446.0 75 2696.5 76 1947.0 77 1585.5 78 1224.0 79 877.5 80 531.0 81 384.0 82 237.0 83 220.5 84 204.0 85 137.5 86 71.0 87 44.5 88 18.0 89 14.0 90 10.0 91 6.5 92 3.0 93 1.5 94 0.0 95 1.5 96 3.0 97 1.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1255229.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.598875585196346 #Duplication Level Percentage of deduplicated Percentage of total 1 79.89215518356646 14.85904254492352 2 6.544660540104476 2.4344665426549414 3 2.32205533046032 1.2956285457952046 4 1.2693826899647176 0.9443636288262259 5 0.8818200178798136 0.8200430400541134 6 0.6766729983219836 0.7551214144591409 7 0.47158613981794095 0.6139680359523825 8 0.3727035840143298 0.5545494071391435 9 0.30772588504919046 0.5151019905336893 >10 4.0965208210207775 18.784463314617568 >50 1.971292620998255 26.646003279313202 >100 1.1908269653222754 30.482501543134454 >500 0.0017314823196252643 0.1942683632318868 >1k 4.328705799063161E-4 0.1665732463849042 >5k 0.0 0.0 >10k+ 4.328705799063161E-4 0.9339051029796465 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11600 0.924134161973632 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2069 0.16483048113133142 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02963602657363716 0.0 2 0.0 0.0 0.0 0.10914343119860997 0.0 3 0.0 0.0 0.0 0.15088880196362575 0.0 4 0.0 0.0 0.0 0.21852586261152349 0.0 5 0.0 0.0 0.0 0.3641566598604717 0.0 6 0.0 0.0 0.0 0.5085924560379023 0.0 7 0.0 0.0 0.0 0.5989345370446348 0.0 8 0.0 0.0 0.0 0.8178587333466643 0.0 9 0.0 0.0 0.0 0.9007121409718865 0.0 10 0.0 0.0 0.0 1.047458272554251 0.0 11 0.0 0.0 0.0 1.2026490783753403 0.0 12 0.0 0.0 0.0 1.3364095316472133 0.0 13 0.0 0.0 0.0 1.3883522448891796 0.0 14 7.966673810117517E-5 0.0 0.0 1.4109775985099133 0.0 15 7.966673810117517E-5 0.0 0.0 1.4459512965363293 0.0 16 7.966673810117517E-5 0.0 0.0 1.5255383678994032 0.0 17 7.966673810117517E-5 0.0 0.0 1.6204214529779029 0.0 18 7.966673810117517E-5 0.0 0.0 1.7710712547272252 0.0 19 7.966673810117517E-5 0.0 0.0 1.8304229746126006 0.0 20 7.966673810117517E-5 0.0 0.0 1.8914476959981008 0.0 21 7.966673810117517E-5 0.0 0.0 1.9876851156243203 0.0 22 7.966673810117517E-5 0.0 0.0 2.0776288629405473 0.0 23 7.966673810117517E-5 0.0 0.0 2.192667632758644 0.0 24 7.966673810117517E-5 0.0 0.0 2.2705817026215933 0.0 25 7.966673810117517E-5 0.0 0.0 2.3348727602692416 0.0 26 7.966673810117517E-5 0.0 0.0 2.4099188275605488 0.0 27 7.966673810117517E-5 0.0 0.0 2.4922942347571637 0.0 28 7.966673810117517E-5 0.0 0.0 2.5704473048344165 0.0 29 7.966673810117517E-5 0.0 0.0 2.6594350512934293 0.0 30 7.966673810117517E-5 0.0 0.0 2.7690564829206465 0.0 31 7.966673810117517E-5 0.0 0.0 2.868082238380407 0.0 32 7.966673810117517E-5 0.0 0.0 2.9515729799104387 0.0 33 7.966673810117517E-5 0.0 0.0 3.0447033967507124 0.0 34 7.966673810117517E-5 0.0 0.0 3.135921811876558 0.0 35 7.966673810117517E-5 0.0 0.0 3.266814262576789 0.0 36 7.966673810117517E-5 0.0 0.0 3.3675926862747754 0.0 37 7.966673810117517E-5 0.0 0.0 3.4682914432346608 0.0 38 7.966673810117517E-5 0.0 0.0 3.5936072222678095 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTACG 65 0.0 44.000004 1 ACACGTA 30 2.5279041E-6 44.0 19 CAAACGA 25 4.443075E-5 44.0 35 AATCACG 20 7.85676E-4 44.0 17 GTCGAAC 25 4.443075E-5 44.0 17 ATTACGA 20 7.85676E-4 44.0 18 CACGATT 20 7.85676E-4 44.0 20 TCGATAT 35 1.4462239E-7 44.0 16 TCGATAG 60 0.0 44.0 1 TACGCAT 20 7.85676E-4 44.0 34 CGAGGTA 25 4.443075E-5 44.0 37 TACGACA 20 7.85676E-4 44.0 1 TCGTCTA 20 7.85676E-4 44.0 21 ACTACGC 20 7.85676E-4 44.0 32 TATCGAA 25 4.443075E-5 44.0 27 ATACCGG 30 2.5279041E-6 44.0 2 ATCGCCA 40 8.312782E-9 44.0 24 AATCGCG 35 1.4462239E-7 44.0 1 CGTTTTT 8320 0.0 42.995193 1 TGCGTAG 130 0.0 42.307693 1 >>END_MODULE