SRR1545915_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545915_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1045806
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7223	0.6906634691328984	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	3012	0.2880075272086792	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1881	0.1798612744619939	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1740	0.1663788503795159	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1095	0.10470393170435052	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1075	0.10279153112527563	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.856154E-4	44.000004	35
CTTCGAA	20	7.856154E-4	44.000004	41
AGCGTGC	20	7.856154E-4	44.000004	26
GCCCATA	20	7.856154E-4	44.000004	11
GTACCGT	20	7.856154E-4	44.000004	27
GTCGAAT	20	7.856154E-4	44.000004	43
ATAGCCG	40	8.310963E-9	44.000004	1
ATGCTCG	20	7.856154E-4	44.000004	1
CGTCTAT	20	7.856154E-4	44.000004	41
ATTCGAC	20	7.856154E-4	44.000004	15
CGTCTAA	20	7.856154E-4	44.000004	32
ATGTCGA	20	7.856154E-4	44.000004	41
TCGATAG	65	0.0	44.000004	1
TAGCCGT	20	7.856154E-4	44.000004	44
ACCTCGC	20	7.856154E-4	44.000004	9
CGTAGAT	20	7.856154E-4	44.000004	11
TAACACG	20	7.856154E-4	44.000004	1
TCGTCAC	20	7.856154E-4	44.000004	32
CGTACAT	20	7.856154E-4	44.000004	35
TCGTACA	20	7.856154E-4	44.000004	34