##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545910_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3021461 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.714143919117276 31.0 31.0 33.0 30.0 34.0 2 32.137246517496 33.0 31.0 34.0 30.0 34.0 3 32.20873080936673 33.0 31.0 34.0 30.0 34.0 4 35.89002638127714 37.0 35.0 37.0 35.0 37.0 5 35.85806436025486 37.0 35.0 37.0 35.0 37.0 6 35.92077442005705 37.0 35.0 37.0 35.0 37.0 7 36.11801542366425 37.0 35.0 37.0 35.0 37.0 8 36.067329017319764 37.0 35.0 37.0 35.0 37.0 9 37.859489829589066 39.0 38.0 39.0 35.0 39.0 10 37.58293587109018 39.0 37.0 39.0 35.0 39.0 11 37.32675020461955 39.0 37.0 39.0 35.0 39.0 12 36.50663536613579 38.0 35.0 39.0 33.0 39.0 13 36.25048809168809 38.0 35.0 39.0 33.0 39.0 14 37.256047984733215 39.0 35.0 41.0 33.0 41.0 15 37.45124428215357 39.0 35.0 41.0 33.0 41.0 16 37.53287664477549 39.0 35.0 41.0 33.0 41.0 17 37.48072439127958 39.0 35.0 41.0 33.0 41.0 18 37.43051490653032 39.0 35.0 41.0 33.0 41.0 19 37.34785555729496 38.0 35.0 41.0 33.0 41.0 20 37.20812745886841 38.0 35.0 41.0 33.0 41.0 21 37.07656329173204 38.0 35.0 41.0 33.0 41.0 22 37.041713594846996 38.0 35.0 41.0 33.0 41.0 23 37.03446246699858 38.0 35.0 41.0 33.0 41.0 24 36.979690288903285 38.0 35.0 41.0 33.0 41.0 25 36.87837705004301 38.0 35.0 41.0 33.0 41.0 26 36.77418176173712 38.0 35.0 41.0 32.0 41.0 27 36.69433661397582 38.0 35.0 41.0 32.0 41.0 28 36.672913534214075 38.0 35.0 41.0 32.0 41.0 29 36.642159538051295 38.0 35.0 41.0 32.0 41.0 30 36.54617749492712 38.0 35.0 41.0 32.0 41.0 31 36.378022751245176 38.0 35.0 41.0 31.0 41.0 32 36.20971642526579 38.0 35.0 41.0 31.0 41.0 33 36.05197750359842 38.0 35.0 41.0 30.0 41.0 34 35.91489150447416 38.0 35.0 41.0 30.0 41.0 35 35.72374225581598 38.0 35.0 41.0 30.0 41.0 36 35.588206169134736 38.0 35.0 40.0 29.0 41.0 37 35.5245376326221 38.0 35.0 40.0 29.0 41.0 38 35.46703697317291 37.0 35.0 40.0 29.0 41.0 39 35.435334760236856 37.0 35.0 40.0 29.0 41.0 40 35.28318551852895 37.0 35.0 40.0 28.0 41.0 41 35.18782734577742 37.0 34.0 40.0 27.0 41.0 42 35.16103666405093 37.0 34.0 40.0 27.0 41.0 43 35.078424642912815 37.0 34.0 40.0 27.0 41.0 44 34.93471999142137 36.0 34.0 40.0 27.0 41.0 45 34.833468974115505 36.0 34.0 40.0 26.0 41.0 46 34.80743554194478 36.0 34.0 40.0 26.0 41.0 47 34.74523384548071 36.0 34.0 40.0 26.0 41.0 48 34.706956336686126 36.0 34.0 40.0 26.0 41.0 49 34.66302791927482 36.0 34.0 40.0 26.0 41.0 50 34.45585066297397 35.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 3.0 12 4.0 13 4.0 14 28.0 15 75.0 16 136.0 17 422.0 18 952.0 19 1943.0 20 3523.0 21 5719.0 22 8977.0 23 12994.0 24 19109.0 25 27669.0 26 38849.0 27 47845.0 28 52331.0 29 54947.0 30 62285.0 31 73410.0 32 91539.0 33 122907.0 34 243093.0 35 530736.0 36 171203.0 37 219321.0 38 377287.0 39 854145.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.37724332698651 23.193978012623695 29.063886642918774 13.36489201747102 2 32.46297072839928 24.929628414862876 29.83914073357227 12.76826012316558 3 29.18617847458564 24.66157928234056 33.087006583900965 13.06523565917283 4 26.596504141539473 26.808388392238058 31.708931540072832 14.886175926149633 5 23.05331758377818 31.195338943643492 30.5526697183912 15.19867375418713 6 20.737749055837558 40.98020791928143 27.898225394933114 10.383817629947895 7 86.78801414282692 4.2022054893311545 7.294451260499474 1.7153291073424413 8 87.95526402624427 3.2251285057129646 6.92092335462877 1.8986841134140076 9 83.89375206233011 4.488159867031214 8.82437337433778 2.793714696300895 10 51.34770893948325 23.019757660284213 14.300002548436005 11.33253085179653 11 44.10472284765549 20.951056459110344 22.009584105172962 12.934636588061208 12 39.014834214308905 22.15362038431077 25.601389526457563 13.230155874922762 13 21.058388640462347 38.481383674983725 25.68644771519474 14.773779969359193 14 15.082372401960509 39.69109645962665 30.274724710992462 14.951806427420378 15 14.334290596502818 22.545748563360572 47.80515121658032 15.314809623556286 16 15.911805580148147 18.8049423772142 46.60381186452514 18.679440178112507 17 17.346674340658378 18.19411205373824 30.532050554351027 33.92716305125236 18 21.40189795598884 22.608863725197843 35.40780437013749 20.581433948675823 19 28.58021334711916 23.354926639794456 27.166294716364035 20.898565296722346 20 30.112088158675554 22.409953330524537 26.419404387480093 21.058554123319812 21 22.524732240462477 28.08373167815173 28.46080091717219 20.930735164213605 22 22.749325574614403 24.472134507114273 26.821726310549764 25.956813607721564 23 19.821371184337643 29.007589374809072 27.14276305403247 24.028276386820814 24 19.651221710291807 22.85543318282116 40.03917310201919 17.454172004867843 25 17.82859351816886 24.160397900221117 37.11333689231799 20.897671689292036 26 16.200043621281228 33.54857136994321 29.070903116075304 21.180481892700254 27 17.395524880182137 32.50679058905609 30.292497569884237 19.805186960877535 28 15.314644140698821 27.142729957460975 39.49893776553793 18.043688136302272 29 16.617159711808295 23.664842935255496 38.02299615980481 21.695001193131404 30 18.98842976957174 29.33779386859536 32.82517960681935 18.848596755013553 31 28.47629011263094 26.284800631217813 26.52167279339366 18.717236462757587 32 29.668263134953587 25.66665596544188 27.81895910620723 16.8461217933973 33 27.379966181923248 25.609465089901875 27.175793432382545 19.834775295792333 34 19.63252214739823 27.233083597637037 29.79495681062903 23.339437444335704 35 20.288992642963123 24.886966934208317 32.73492525635777 22.08911516647079 36 28.424527074815792 25.38679135689655 27.689551511669354 18.499130056618306 37 20.116096153483365 32.48428492044081 28.857728099088487 18.54189082698734 38 20.64570749051535 32.6618149299296 25.47036019991653 21.222117379638526 39 21.14500236805969 30.590532196179264 27.508744941602753 20.75572049415829 40 23.457426721708472 26.258323374023362 26.90364032499509 23.380609579273074 41 17.343728745795495 24.440097025908987 29.02622274455967 29.18995148373585 42 21.94362263818729 25.3121254916082 25.425348862685965 27.318903007518546 43 21.9664592725175 26.273415410624196 27.178010902672582 24.58211441418572 44 20.335394036196398 29.437017389931558 28.798716912116358 21.428871661755686 45 17.55528203077915 35.657518002052655 25.046260732804427 21.740939234363772 46 21.163437158381328 32.17383907983588 26.96136074567899 19.701363016103798 47 20.813573301128162 28.094289484458017 28.22422662413978 22.867910590274043 48 21.815340327080175 24.549448098122067 31.696288649762483 21.93892292503527 49 20.34244360592442 24.889118211355367 33.655870454723726 21.11256772799649 50 19.55269321695696 32.63864732988445 28.274930571667152 19.533728881491438 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2254.0 1 4840.0 2 7426.0 3 19838.5 4 32251.0 5 23046.5 6 13842.0 7 13913.0 8 13984.0 9 14006.5 10 14029.0 11 13347.0 12 12665.0 13 11993.0 14 11321.0 15 10525.5 16 9730.0 17 9855.5 18 9981.0 19 10099.0 20 10217.0 21 11966.0 22 13715.0 23 14793.5 24 15872.0 25 18415.0 26 20958.0 27 24752.0 28 28546.0 29 32966.0 30 37386.0 31 44222.5 32 51059.0 33 58635.5 34 66212.0 35 75738.0 36 85264.0 37 94669.5 38 104075.0 39 127228.5 40 150382.0 41 195037.0 42 239692.0 43 277755.5 44 315819.0 45 317125.0 46 318431.0 47 295070.0 48 271709.0 49 260302.5 50 248896.0 51 231404.5 52 213913.0 53 197963.5 54 182014.0 55 165150.5 56 148287.0 57 130852.0 58 113417.0 59 101224.5 60 89032.0 61 78412.5 62 67793.0 63 56516.5 64 45240.0 65 34029.5 66 22819.0 67 17419.0 68 12019.0 69 10065.0 70 8111.0 71 6815.0 72 5519.0 73 4600.0 74 3681.0 75 2656.5 76 1632.0 77 1334.0 78 1036.0 79 818.5 80 601.0 81 432.0 82 263.0 83 203.0 84 143.0 85 133.0 86 123.0 87 80.5 88 38.0 89 31.5 90 25.0 91 24.5 92 24.0 93 16.0 94 8.0 95 6.5 96 5.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3021461.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.892617555193986 #Duplication Level Percentage of deduplicated Percentage of total 1 79.9100679493216 11.1016001282949 2 7.506344728489049 2.0856555310068963 3 2.498760913808781 1.0414298921223732 4 1.275236934303317 0.7086551608213609 5 0.7656078517713699 0.5318148540956645 6 0.49260613513866525 0.41061531844942095 7 0.40927557252099006 0.39801363026020237 8 0.3252593878653296 0.36149634254796226 9 0.2713029143930827 0.3392196868145369 >10 3.384920047033967 11.237297533466146 >50 1.093488212467411 10.956962670450585 >100 2.040377416566271 57.64353364851004 >500 0.024823868837652446 2.1713658379837812 >1k 0.0014460506119020843 0.24257984450806463 >5k 2.4100843531701404E-4 0.2098005942977961 >10k+ 2.4100843531701404E-4 0.5599593263703068 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16724 0.5535070616499765 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6266 0.20738311697552939 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02528578062069972 0.0 2 0.0 0.0 0.0 0.08949312931724089 0.0 3 0.0 0.0 0.0 0.12596555110259572 0.0 4 0.0 0.0 0.0 0.18702872550729596 0.0 5 0.0 0.0 0.0 0.32725889892340165 0.0 6 3.3096571493062464E-5 0.0 0.0 0.47245355806346667 0.0 7 3.3096571493062464E-5 0.0 0.0 0.5734973908317863 0.0 8 3.3096571493062464E-5 0.0 0.0 0.8533950959486156 0.0 9 3.3096571493062464E-5 0.0 0.0 0.9673465915992296 0.0 10 3.3096571493062464E-5 0.0 0.0 1.1500396662409345 0.0 11 3.3096571493062464E-5 0.0 0.0 1.2966243813837082 0.0 12 3.3096571493062464E-5 0.0 0.0 1.4379136450875918 0.0 13 3.3096571493062464E-5 0.0 0.0 1.4896104897597553 0.0 14 3.3096571493062464E-5 0.0 0.0 1.5071847692225715 0.0 15 3.3096571493062464E-5 0.0 0.0 1.5359456898500428 0.0 16 3.3096571493062464E-5 0.0 0.0 1.605448489985474 0.0 17 3.3096571493062464E-5 0.0 0.0 1.689215912434415 0.0 18 3.3096571493062464E-5 0.0 0.0 1.8197818869745463 0.0 19 3.3096571493062464E-5 0.0 0.0 1.8777008870874057 0.0 20 3.3096571493062464E-5 0.0 0.0 1.9383999992056822 0.0 21 3.3096571493062464E-5 0.0 0.0 2.0201816273650395 0.0 22 3.3096571493062464E-5 0.0 0.0 2.103485697813078 0.0 23 3.3096571493062464E-5 0.0 0.0 2.201484646004036 0.0 24 3.3096571493062464E-5 0.0 0.0 2.2750583244331137 0.0 25 3.3096571493062464E-5 0.0 0.0 2.3367834302676753 0.0 26 3.3096571493062464E-5 0.0 0.0 2.4016858069655704 0.0 27 3.3096571493062464E-5 0.0 0.0 2.4609286699381525 0.0 28 3.3096571493062464E-5 0.0 0.0 2.5281809032120552 0.0 29 3.3096571493062464E-5 0.0 0.0 2.6010595536397787 0.0 30 3.3096571493062464E-5 0.0 0.0 2.69823108754341 0.0 31 3.3096571493062464E-5 0.0 0.0 2.794542110588222 0.0 32 3.3096571493062464E-5 0.0 0.0 2.8727162124548355 0.0 33 3.3096571493062464E-5 0.0 0.0 2.9573110491911034 0.0 34 3.3096571493062464E-5 0.0 0.0 3.0450500602192117 0.0 35 3.3096571493062464E-5 0.0 0.0 3.1586705901548955 0.0 36 3.3096571493062464E-5 0.0 0.0 3.256007606915992 0.0 37 6.619314298612493E-5 0.0 0.0 3.348247751667157 0.0 38 6.619314298612493E-5 0.0 0.0 3.441911048992524 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 55 1.8189894E-12 44.000004 1 ACTACCG 20 7.8585197E-4 44.000004 1 AACGATC 20 7.8585197E-4 44.000004 42 TGTCGTA 30 2.529092E-6 44.000004 22 GCGAAAA 25 4.444568E-5 44.0 42 CCGTCGA 25 4.444568E-5 44.0 39 TATCGTG 35 1.4471334E-7 44.0 1 TACCGTT 25 4.444568E-5 44.0 34 TATAGCG 185 0.0 42.810814 1 GTTAGCG 160 0.0 42.625004 1 CGACGGT 495 0.0 42.22222 28 CGTTTTT 9905 0.0 41.423523 1 CGGTCTA 500 0.0 41.36 31 CGGGCTA 160 0.0 41.250004 6 CCCGTAA 70 0.0 40.857143 27 TAATGCG 140 0.0 40.857143 1 ACGGGAT 735 0.0 40.70748 5 CGACTAT 60 3.6379788E-12 40.333336 23 TGCGTAG 120 0.0 40.333336 1 CGTATGG 230 0.0 40.173916 2 >>END_MODULE