##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545909_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3251243 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.73905057235033 31.0 31.0 33.0 30.0 34.0 2 32.16460473732661 33.0 31.0 34.0 30.0 34.0 3 32.2465564708636 34.0 31.0 34.0 30.0 34.0 4 35.91509155113906 37.0 35.0 37.0 35.0 37.0 5 35.89258938812017 37.0 35.0 37.0 35.0 37.0 6 35.94543133195519 37.0 35.0 37.0 35.0 37.0 7 36.133602440666536 37.0 35.0 37.0 35.0 37.0 8 36.08353143705346 37.0 35.0 37.0 35.0 37.0 9 37.83537496274502 39.0 38.0 39.0 35.0 39.0 10 37.586465238064335 39.0 37.0 39.0 35.0 39.0 11 37.313792601783376 39.0 37.0 39.0 34.0 39.0 12 36.64234724995948 39.0 35.0 39.0 33.0 39.0 13 36.43762923903258 39.0 35.0 39.0 33.0 39.0 14 37.50563215361017 40.0 35.0 41.0 33.0 41.0 15 37.678506035999156 40.0 35.0 41.0 33.0 41.0 16 37.74428303267396 40.0 35.0 41.0 33.0 41.0 17 37.669011513442705 39.0 35.0 41.0 33.0 41.0 18 37.63323873361665 39.0 35.0 41.0 33.0 41.0 19 37.56328210472118 39.0 36.0 41.0 34.0 41.0 20 37.42051055550139 39.0 35.0 41.0 33.0 41.0 21 37.31092262251699 39.0 35.0 41.0 33.0 41.0 22 37.27847749306957 39.0 35.0 41.0 33.0 41.0 23 37.25527498252207 39.0 35.0 41.0 33.0 41.0 24 37.21912204040116 39.0 35.0 41.0 33.0 41.0 25 37.14414763830326 39.0 35.0 41.0 33.0 41.0 26 37.03327035229295 39.0 35.0 41.0 33.0 41.0 27 36.95947826723502 39.0 35.0 41.0 33.0 41.0 28 36.94050859932647 38.0 35.0 41.0 32.0 41.0 29 36.895150562415665 38.0 35.0 41.0 32.0 41.0 30 36.81184303972358 38.0 35.0 41.0 32.0 41.0 31 36.68610374555209 38.0 35.0 41.0 32.0 41.0 32 36.52310270256637 38.0 35.0 41.0 31.0 41.0 33 36.396818693650395 38.0 35.0 41.0 31.0 41.0 34 36.27463957630974 38.0 35.0 41.0 31.0 41.0 35 36.10355516336367 38.0 35.0 41.0 30.0 41.0 36 35.963038136491186 38.0 35.0 41.0 30.0 41.0 37 35.90219617543198 38.0 35.0 41.0 30.0 41.0 38 35.84605733868554 38.0 35.0 41.0 30.0 41.0 39 35.8036692428096 38.0 35.0 41.0 30.0 41.0 40 35.658577350262654 38.0 35.0 41.0 29.0 41.0 41 35.574623920758924 38.0 35.0 40.0 29.0 41.0 42 35.56130040110813 38.0 35.0 40.0 29.0 41.0 43 35.50403061229198 38.0 35.0 40.0 29.0 41.0 44 35.390930791700285 38.0 35.0 40.0 28.0 41.0 45 35.30000464437755 37.0 34.0 40.0 28.0 41.0 46 35.25786076279134 37.0 34.0 40.0 28.0 41.0 47 35.17215815612675 37.0 34.0 40.0 27.0 41.0 48 35.10827766488079 37.0 34.0 40.0 27.0 41.0 49 35.05370561351459 37.0 34.0 40.0 27.0 41.0 50 34.913695777276565 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 10.0 11 4.0 12 8.0 13 23.0 14 16.0 15 63.0 16 150.0 17 383.0 18 980.0 19 1940.0 20 3549.0 21 5606.0 22 8473.0 23 12624.0 24 18352.0 25 27116.0 26 37891.0 27 47239.0 28 50979.0 29 54798.0 30 61904.0 31 74561.0 32 93660.0 33 125089.0 34 247861.0 35 510512.0 36 184476.0 37 238133.0 38 420853.0 39 1023988.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.727869617866155 23.55883580525971 29.347391136251584 13.365903440622557 2 31.183888746550164 25.56182358562556 30.241326163562675 13.0129615042616 3 29.482078085212333 24.835424482267243 32.722746346551155 12.959751085969273 4 27.053745290647303 26.84610162943834 31.650541039227154 14.449612040687207 5 23.125217032378078 32.1055670092946 30.387731707534627 14.381484250792697 6 21.565382839732372 40.4796257923508 27.978622329982716 9.976369037934107 7 87.51938873839944 4.142692502529033 6.738222888907412 1.5996958701641188 8 88.7179457210673 3.187088753439838 6.514862161948523 1.5801033635443429 9 83.29638848895638 5.930101195142904 8.060209587533137 2.713300728367581 10 47.69828031925021 28.267281159851787 14.186574181013231 9.847864339884776 11 40.338295230470315 21.762384417282867 25.23551761587799 12.66380273636883 12 37.48351015288614 22.463162550446093 26.315073957867806 13.73825333879996 13 20.73766863934809 38.593239570219765 25.49006641459897 15.17902537583318 14 15.129106006533503 39.70589094693937 29.709806372516606 15.455196674010525 15 15.22611505814853 24.857569858666363 45.07273064486414 14.843584438320976 16 17.188810556454868 20.913232262245547 43.01281079267222 18.885146388627366 17 17.122189882454187 21.342575747183464 30.222195018951215 31.31303935141114 18 20.983789892050517 23.8296553041406 34.95709179535334 20.229463008455536 19 27.773346993749776 24.498015066852894 27.965642678815456 19.762995260581874 20 28.888735785052056 24.094200279708406 27.725365344885017 19.29169859035452 21 21.547451236342532 28.055854330174647 30.197558287707192 20.199136145775633 22 21.865606477276536 25.459985611656833 27.27147740110475 25.40293050996188 23 19.434474753194394 29.530398066216524 28.273340380894325 22.761786799694764 24 18.444391883350463 24.56208287107423 39.7443070234984 17.24921822207691 25 17.52803466243526 27.375929759787255 35.673125632258184 19.422909945519297 26 16.95954439578955 34.68928652826012 28.613887057965215 19.737282017985123 27 18.060938539506274 33.42284781543551 29.933413159213263 18.582800485844952 28 15.773259642542866 28.462468046836243 38.17167772448876 17.592594586132133 29 16.594730077081287 24.803805805964057 36.77974854540248 21.821715571552172 30 18.33526438965036 31.269240718088437 31.699383897174094 18.69611099508711 31 27.192892072355097 27.86934104894651 26.691145509578952 18.246621369119442 32 27.26354197456173 27.288609310346846 28.23209461735096 17.215754097740465 33 25.186767030332707 28.034385618054387 27.103541630078098 19.675305721534812 34 18.419847424508102 28.3805301541595 29.709806372516606 23.489816048815793 35 20.10972418856419 26.22221716432761 32.42599830280296 21.242060344305237 36 26.64430188700137 27.666187977951818 27.437906056237573 18.251604078809244 37 19.339280392145405 33.4867003173863 29.238202127617036 17.935817162851254 38 19.971930735414116 32.15588622566815 27.669540541878906 20.202642497038823 39 20.569579080985335 32.14416763065695 28.287211998610996 18.99904128974672 40 22.73047569806379 27.916369216327418 27.542604474657846 21.810550610950948 41 17.922222362339575 26.339802961513488 29.13507234002503 26.602902336121907 42 20.829356649133885 26.844871330749502 26.396058369060693 25.92971365105592 43 21.279830514052627 27.532300723138814 27.706541774945766 23.481326987862797 44 18.73397343723616 30.479450474787644 29.5415015118833 21.245074576092897 45 16.989717471133346 37.06385527012284 25.239331541813392 20.707095716930418 46 20.13995877884243 33.21591157597263 27.107478585882383 19.53665105930255 47 20.841813423358392 28.359492046580336 28.89983923071884 21.898855299342436 48 20.970687211014372 26.527577298897683 32.66618336433174 19.835552125756212 49 19.799627404042084 27.23084678690581 32.83418065029283 20.13534515875928 50 19.11638102719483 33.080609477667466 28.546466689816786 19.25654280532092 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2677.0 1 5484.5 2 8292.0 3 21256.0 4 34220.0 5 24465.5 6 14711.0 7 14231.5 8 13752.0 9 13787.0 10 13822.0 11 13423.5 12 13025.0 13 12424.5 14 11824.0 15 11304.0 16 10784.0 17 10576.5 18 10369.0 19 11681.0 20 12993.0 21 12921.0 22 12849.0 23 14912.5 24 16976.0 25 22287.5 26 27599.0 27 38974.5 28 50350.0 29 59693.0 30 69036.0 31 78486.5 32 87937.0 33 93643.5 34 99350.0 35 109262.5 36 119175.0 37 128348.0 38 137521.0 39 156482.5 40 175444.0 41 220372.5 42 265301.0 43 303945.0 44 342589.0 45 340019.5 46 337450.0 47 305896.0 48 274342.0 49 264765.0 50 255188.0 51 232967.0 52 210746.0 53 188810.5 54 166875.0 55 150461.0 56 134047.0 57 118065.5 58 102084.0 59 88109.5 60 74135.0 61 65114.0 62 56093.0 63 46465.0 64 36837.0 65 28354.0 66 19871.0 67 15847.5 68 11824.0 69 10073.5 70 8323.0 71 6928.0 72 5533.0 73 4291.5 74 3050.0 75 2665.5 76 2281.0 77 1650.5 78 1020.0 79 741.0 80 462.0 81 337.0 82 212.0 83 175.0 84 138.0 85 90.0 86 42.0 87 36.5 88 31.0 89 25.5 90 20.0 91 21.0 92 22.0 93 18.0 94 14.0 95 10.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3251243.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.024851212818078 #Duplication Level Percentage of deduplicated Percentage of total 1 79.67474207045696 10.377516608873588 2 7.416865383833448 1.9320713617986305 3 2.432067140092531 0.9503193791786758 4 1.1911941166729376 0.6206050454099707 5 0.7139747632541058 0.46497075305458696 6 0.5155087635805131 0.40286549667239957 7 0.3927682880503292 0.3581023959078167 8 0.31613060966189593 0.3294043323730931 9 0.2599887071845609 0.30476828052826493 >10 3.5255960584451946 11.070988155375636 >50 1.2553553300059035 11.861247005691029 >100 2.2756987155004063 57.51955032696671 >500 0.025808617081032416 2.164827879829433 >1k 0.0038234988268196174 0.897996451014478 >5k 2.3896867667622609E-4 0.166395931757076 >10k+ 2.3896867667622609E-4 0.5783705955686469 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18582 0.5715352559005894 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 5346 0.16442941976345662 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 4137 0.12724364189326973 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 3322 0.10217630610815616 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02389855203071564 0.0 2 0.0 0.0 0.0 0.08467530725940817 0.0 3 0.0 0.0 0.0 0.12010790949799816 0.0 4 0.0 0.0 0.0 0.17396423460196608 0.0 5 0.0 0.0 0.0 0.3014231787657828 0.0 6 0.0 0.0 0.0 0.42534501419918475 0.0 7 0.0 0.0 0.0 0.508666992900869 0.0 8 0.0 0.0 0.0 0.7130503625844024 0.0 9 0.0 0.0 0.0 0.7912666017274008 0.0 10 0.0 0.0 0.0 0.9207247812605824 0.0 11 0.0 0.0 0.0 1.0486450874327142 0.0 12 0.0 0.0 0.0 1.1642316492492255 0.0 13 0.0 0.0 0.0 1.2067384689486451 0.0 14 0.0 0.0 0.0 1.2202717545258843 0.0 15 0.0 0.0 0.0 1.245954239655418 0.0 16 0.0 0.0 0.0 1.3044241848425355 0.0 17 0.0 0.0 0.0 1.3797799795339813 0.0 18 0.0 0.0 0.0 1.488107779086337 0.0 19 0.0 0.0 0.0 1.5385807827959952 0.0 20 0.0 0.0 0.0 1.5894843910467473 0.0 21 0.0 0.0 0.0 1.6609339874011262 0.0 22 0.0 0.0 0.0 1.7365973567647819 0.0 23 0.0 0.0 0.0 1.8251788623612568 0.0 24 0.0 0.0 0.0 1.894167861337956 0.0 25 0.0 0.0 0.0 1.9516228101067807 0.0 26 3.075746722099824E-5 0.0 0.0 2.013383804286545 0.0 27 3.075746722099824E-5 0.0 0.0 2.067732248866049 0.0 28 3.075746722099824E-5 0.0 0.0 2.1286935488980676 0.0 29 3.075746722099824E-5 0.0 0.0 2.1978363352108716 0.0 30 3.075746722099824E-5 0.0 0.0 2.2853105719873907 0.0 31 3.075746722099824E-5 0.0 0.0 2.368724823090738 0.0 32 3.075746722099824E-5 0.0 0.0 2.4446034947249404 0.0 33 3.075746722099824E-5 0.0 0.0 2.5202976215558173 0.0 34 3.075746722099824E-5 0.0 0.0 2.5996211295187717 0.0 35 3.075746722099824E-5 0.0 0.0 2.702750917110779 0.0 36 3.075746722099824E-5 0.0 0.0 2.7945927142326794 0.0 37 3.075746722099824E-5 0.0 0.0 2.8815133165992206 0.0 38 3.075746722099824E-5 0.0 0.0 2.969018310842961 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGCGA 20 7.8586076E-4 44.000004 20 ATACGTC 30 2.5291502E-6 44.000004 15 ACCGTAA 25 4.4446424E-5 44.0 18 CGGTCTA 385 0.0 43.42857 31 CGACGGT 385 0.0 42.285713 28 CGCATCG 95 0.0 41.68421 21 CGTTTTT 10485 0.0 40.97854 1 ACGGGAT 1335 0.0 40.37453 5 GCGATAC 60 3.6379788E-12 40.333336 9 CTCGTAG 175 0.0 40.22857 1 ACGTATA 55 7.8216544E-11 40.0 13 CAATACG 55 7.8216544E-11 40.0 1 ACGCCGA 105 0.0 39.80952 12 TAGGACG 100 0.0 39.600002 1 ACGACTT 50 1.3496901E-9 39.600002 13 TATTGCG 250 0.0 39.6 1 CCGACGG 95 0.0 39.36842 2 TACGGGT 235 0.0 39.319153 4 CGGGTAT 280 0.0 39.285713 6 GAGTACG 140 0.0 39.285713 1 >>END_MODULE