##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545898_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1729996 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.747395947736294 31.0 31.0 33.0 30.0 34.0 2 32.17975475087804 33.0 31.0 34.0 30.0 34.0 3 32.25040346914097 34.0 31.0 34.0 30.0 34.0 4 35.93714262923151 37.0 35.0 37.0 35.0 37.0 5 35.92736399390519 37.0 35.0 37.0 35.0 37.0 6 35.96940917782469 37.0 35.0 37.0 35.0 37.0 7 36.12021472882018 37.0 35.0 37.0 35.0 37.0 8 36.061896674905604 37.0 35.0 37.0 35.0 37.0 9 37.86193667499809 39.0 38.0 39.0 35.0 39.0 10 37.65254254923133 39.0 37.0 39.0 35.0 39.0 11 37.386137308988 39.0 37.0 39.0 35.0 39.0 12 36.4886167366861 38.0 35.0 39.0 33.0 39.0 13 36.22402190525296 38.0 35.0 39.0 33.0 39.0 14 37.213537487947946 39.0 35.0 41.0 33.0 41.0 15 37.419131604928566 39.0 35.0 41.0 33.0 41.0 16 37.50777631855796 39.0 35.0 41.0 33.0 41.0 17 37.42305473538667 39.0 35.0 41.0 33.0 41.0 18 37.380697412017135 39.0 35.0 41.0 33.0 41.0 19 37.30420012531821 38.0 35.0 41.0 34.0 41.0 20 37.135345399642546 38.0 35.0 41.0 33.0 41.0 21 36.99603756309263 38.0 35.0 41.0 33.0 41.0 22 36.97234386669102 38.0 35.0 41.0 33.0 41.0 23 36.954509721409764 38.0 35.0 41.0 33.0 41.0 24 36.91259286148639 38.0 35.0 41.0 33.0 41.0 25 36.8276660755285 38.0 35.0 41.0 33.0 41.0 26 36.73111960952511 38.0 35.0 41.0 33.0 41.0 27 36.62990319052761 38.0 35.0 41.0 32.0 41.0 28 36.59921699240923 38.0 35.0 41.0 32.0 41.0 29 36.549420923516585 38.0 35.0 41.0 32.0 41.0 30 36.46100742429462 37.0 35.0 41.0 32.0 41.0 31 36.25326532546896 37.0 35.0 40.0 31.0 41.0 32 36.05975620752881 37.0 35.0 41.0 31.0 41.0 33 35.89374137281242 37.0 35.0 41.0 30.0 41.0 34 35.749243928887694 37.0 35.0 40.0 30.0 41.0 35 35.55411688813153 37.0 35.0 40.0 30.0 41.0 36 35.3891488766448 37.0 35.0 40.0 29.0 41.0 37 35.29868045937678 37.0 35.0 40.0 28.0 41.0 38 35.26113297371786 37.0 35.0 40.0 29.0 41.0 39 35.254044518022006 37.0 35.0 40.0 28.0 41.0 40 35.081116372523404 36.0 35.0 40.0 27.0 41.0 41 34.972918434493494 36.0 34.0 40.0 27.0 41.0 42 34.92571890339631 36.0 34.0 40.0 26.0 41.0 43 34.847384040194314 36.0 34.0 40.0 26.0 41.0 44 34.71893518828945 36.0 34.0 40.0 26.0 41.0 45 34.6260794822647 35.0 34.0 40.0 26.0 41.0 46 34.53430585966673 35.0 34.0 40.0 25.0 41.0 47 34.45671146060453 35.0 34.0 40.0 25.0 41.0 48 34.464005697123 35.0 34.0 40.0 25.0 41.0 49 34.46141089343559 36.0 34.0 40.0 25.0 41.0 50 34.305460243838716 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 6.0 12 2.0 13 15.0 14 24.0 15 52.0 16 106.0 17 239.0 18 563.0 19 1171.0 20 2145.0 21 3440.0 22 5291.0 23 8021.0 24 11493.0 25 16688.0 26 23299.0 27 28660.0 28 31239.0 29 31723.0 30 34978.0 31 40866.0 32 51719.0 33 70692.0 34 145003.0 35 331646.0 36 91045.0 37 118132.0 38 204394.0 39 477342.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.52343473626529 22.899648322886296 27.288213383152332 14.288703557696087 2 33.307475855435506 24.936473841558016 29.087003669372645 12.669046633633835 3 29.24850693296401 25.063930783654992 32.027877521104095 13.659684762276909 4 25.829539490264718 26.91746108083487 31.87458236897658 15.378417059923837 5 23.328551048672942 31.312326733703433 30.770417966284313 14.58870425133931 6 20.643515938765177 40.7225797053866 28.744286113956335 9.889618241891888 7 85.77898446007967 4.507178051278731 8.056203598158609 1.657633890482984 8 87.2269068830217 3.390990499399998 7.627185265168243 1.7549173524100632 9 83.26348731442154 4.5476405725793585 9.415050670637388 2.7738214423617165 10 54.07792850388093 21.446870397388203 14.578819835421585 9.89638126330928 11 45.65617492757209 21.151204973884333 19.59143258134701 13.601187517196573 12 39.99610403723477 21.313633095105423 24.83988402285323 13.850378844806578 13 19.603051105320475 40.74541212812053 26.562026733009787 13.089510033549209 14 13.806852732607474 41.865472521323746 30.894695710279095 13.432979035789677 15 13.094943572123865 21.0938059972393 51.913472632306664 13.897777798330168 16 16.69437385982395 16.494604611802572 49.275663065116916 17.53535846325656 17 17.136687021241666 16.9323512886735 29.79018448597569 36.14077720410914 18 20.538891419402123 21.622419936231065 38.04604172495197 19.792646919414842 19 27.95827273589072 21.93623569071836 29.666484777999486 20.439006795391435 20 30.30874059824416 21.07045334208865 27.859601987519046 20.761204072148143 21 21.510743377441337 26.56728686077887 30.61810547538838 21.303864286391413 22 23.292365993909815 23.309129038448646 27.885498001151447 25.5130069664901 23 19.476403413649514 30.93978251972837 25.42768885014763 24.15612521647449 24 18.25495550278729 23.80849435490024 39.81338685176151 18.123163290550963 25 15.40049803583361 25.045491434662274 38.54575386301472 21.0082566664894 26 16.71570338890957 33.92175473238088 29.118391025181563 20.244150853527984 27 17.745474556010535 34.691640905528104 29.418102700815492 18.14478183764587 28 15.077318097845312 28.6009331813484 38.97633289325525 17.345415827551047 29 15.981539841710617 22.671208488343325 39.82159496322535 21.52565670672071 30 17.53605210647886 29.246426003297117 34.718982009206954 18.498539881017066 31 28.850355723365833 26.564338877084108 25.303584516958423 19.281720882591635 32 30.664348356874815 26.14104310067769 26.65798071209413 16.536627830353364 33 30.22365369630912 26.289540553850994 25.54057928457638 17.946226465263504 34 20.829007697127626 28.05902441392928 28.20902476075089 22.902943128192206 35 19.651143702066364 27.42757786723206 32.600248786702394 20.32102964399918 36 31.971634616496225 24.91630038450956 26.27006074002483 16.842004258969386 37 21.820281665391132 33.730887239045636 27.731046776986766 16.71778431857646 38 19.78160643145996 35.433203313764885 23.62606618743627 21.159124067338883 39 19.59969849641271 34.199096414095756 26.743587846445887 19.45761724304565 40 23.690517203507984 26.45988776852663 24.98763002920238 24.861964998763003 41 17.011137598006005 24.456877356941867 27.496190742637555 31.035794302414573 42 21.51114800265434 26.00179422380167 23.940170959932853 28.546886813611128 43 21.372188143787614 27.34757768226054 26.608327418098078 24.67190675585377 44 19.466229979722495 29.847294444611432 29.812785694302185 20.873689881363887 45 19.269639929803304 36.66968016111019 23.060342336051644 21.000337573034848 46 22.63155521746871 31.60556440592926 26.866825125607225 18.8960552509948 47 21.89739167026976 27.736538119163278 26.98994679756485 23.376123413002112 48 23.576644107847645 23.84930369781202 30.251341621599124 22.322710572741208 49 20.760105803712843 23.56502558387418 33.215683735684934 22.459184876728038 50 19.88623095082301 32.82383311868929 27.533416262234134 19.75651966825357 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1777.0 1 3498.5 2 5220.0 3 12445.0 4 19670.0 5 14432.0 6 9194.0 7 9184.5 8 9175.0 9 9412.0 10 9649.0 11 9510.5 12 9372.0 13 8558.0 14 7744.0 15 7509.0 16 7274.0 17 6869.0 18 6464.0 19 6481.0 20 6498.0 21 6646.0 22 6794.0 23 7025.5 24 7257.0 25 8440.5 26 9624.0 27 10829.5 28 12035.0 29 14706.0 30 17377.0 31 21265.0 32 25153.0 33 29274.5 34 33396.0 35 37686.0 36 41976.0 37 46204.5 38 50433.0 39 64169.5 40 77906.0 41 107091.5 42 136277.0 43 160965.0 44 185653.0 45 194222.0 46 202791.0 47 192342.0 48 181893.0 49 165535.5 50 149178.0 51 138206.5 52 127235.0 53 113514.0 54 99793.0 55 90549.5 56 81306.0 57 69963.5 58 58621.0 59 52797.5 60 46974.0 61 39837.5 62 32701.0 63 27082.5 64 21464.0 65 16999.5 66 12535.0 67 9596.5 68 6658.0 69 5761.5 70 4865.0 71 4074.0 72 3283.0 73 2720.5 74 2158.0 75 1620.5 76 1083.0 77 880.5 78 678.0 79 558.0 80 438.0 81 307.0 82 176.0 83 149.0 84 122.0 85 95.5 86 69.0 87 48.5 88 28.0 89 21.5 90 15.0 91 13.0 92 11.0 93 6.5 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1729996.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.820909728677446 #Duplication Level Percentage of deduplicated Percentage of total 1 79.68664428283853 11.810285614971804 2 6.143337523971444 1.8209970175115515 3 2.1279230202449777 0.9461326497787645 4 1.1828188556037327 0.7012180593712194 5 0.7638214352904724 0.5660264270634465 6 0.5554842564107692 0.49396692119793156 7 0.4484259789631873 0.4652256667945047 8 0.3845841396143897 0.45599094530447626 9 0.33203139997079045 0.44289066654481324 >10 4.642515786028535 16.633307718114875 >50 1.8023440766811651 19.6971075433959 >100 1.9233676150612489 44.60318733686477 >500 0.005913202341856679 0.5587280810025999 >1k 3.9421348945711186E-4 0.1900598606610329 >5k 0.0 0.0 >10k+ 3.9421348945711186E-4 0.6148754914222903 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10524 0.6083251059540021 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3253 0.1880351168442008 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02098270747446815 0.0 2 0.0 0.0 0.0 0.056763137024594276 0.0 3 0.0 0.0 0.0 0.08317938307371808 0.0 4 0.0 0.0 0.0 0.11890200902198618 0.0 5 0.0 0.0 0.0 0.19757271115077724 0.0 6 0.0 0.0 0.0 0.28601222199357684 0.0 7 0.0 0.0 0.0 0.347052825555666 0.0 8 0.0 0.0 0.0 0.496821957969845 0.0 9 0.0 0.0 5.780360185803898E-5 0.5737585520428949 0.0 10 0.0 0.0 5.780360185803898E-5 0.6883252909255282 0.0 11 0.0 0.0 5.780360185803898E-5 0.7958977939833387 0.0 12 0.0 0.0 5.780360185803898E-5 0.8922563982806897 0.0 13 0.0 0.0 5.780360185803898E-5 0.9325455087757428 0.0 14 0.0 0.0 5.780360185803898E-5 0.94618715881424 0.0 15 0.0 0.0 5.780360185803898E-5 0.969828831974178 0.0 16 0.0 0.0 5.780360185803898E-5 1.0207538052111103 0.0 17 0.0 0.0 5.780360185803898E-5 1.0808117475416128 0.0 18 0.0 0.0 5.780360185803898E-5 1.177343762644538 0.0 19 0.0 0.0 5.780360185803898E-5 1.2165346047042884 0.0 20 0.0 0.0 5.780360185803898E-5 1.2623728609777132 0.0 21 0.0 0.0 5.780360185803898E-5 1.3175174971502823 0.0 22 0.0 0.0 5.780360185803898E-5 1.3679222379704925 0.0 23 0.0 0.0 5.780360185803898E-5 1.4301767171716004 0.0 24 0.0 0.0 5.780360185803898E-5 1.4767664202691797 0.0 25 0.0 0.0 5.780360185803898E-5 1.5144543686806213 0.0 26 0.0 0.0 5.780360185803898E-5 1.5545122647682423 0.0 27 0.0 0.0 5.780360185803898E-5 1.5946279644577213 0.0 28 0.0 0.0 5.780360185803898E-5 1.6407552387404365 0.0 29 0.0 0.0 5.780360185803898E-5 1.6885588174770347 0.0 30 0.0 0.0 5.780360185803898E-5 1.7535878695673284 0.0 31 0.0 0.0 5.780360185803898E-5 1.8124319362588122 0.0 32 0.0 0.0 5.780360185803898E-5 1.87144941375587 0.0 33 0.0 0.0 5.780360185803898E-5 1.9312761416789404 0.0 34 0.0 0.0 5.780360185803898E-5 1.9873456354812382 0.0 35 0.0 0.0 5.780360185803898E-5 2.06746142765648 0.0 36 0.0 0.0 5.780360185803898E-5 2.137056964293559 0.0 37 0.0 0.0 5.780360185803898E-5 2.2069415189399284 0.0 38 0.0 0.0 5.780360185803898E-5 2.2702364629744807 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGCA 30 2.5284608E-6 44.000004 35 TACGCCC 30 2.5284608E-6 44.000004 40 TGCGCAA 30 2.5284608E-6 44.000004 41 CTAGACG 25 4.4437766E-5 44.0 1 GATACGA 20 7.857586E-4 44.0 11 ACACGAT 20 7.857586E-4 44.0 24 ACGCCTA 20 7.857586E-4 44.0 36 CGAGTTA 20 7.857586E-4 44.0 17 CGACGAG 20 7.857586E-4 44.0 2 CGCATCG 95 0.0 44.0 21 TCCTCGA 40 8.3164196E-9 44.0 14 TCGATTG 25 4.4437766E-5 44.0 1 CGTTCGA 20 7.857586E-4 44.0 14 TACGACA 25 4.4437766E-5 44.0 11 TTAACGC 35 1.4466605E-7 44.0 1 ATGCGTC 20 7.857586E-4 44.0 11 CGAGAAT 20 7.857586E-4 44.0 21 GACGCGT 20 7.857586E-4 44.0 37 AATACGG 70 0.0 44.0 2 AATCGCG 20 7.857586E-4 44.0 1 >>END_MODULE