##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545894_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1605826 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.774574580309448 31.0 31.0 33.0 30.0 34.0 2 32.19297047127148 33.0 31.0 34.0 30.0 34.0 3 32.23341881374445 34.0 31.0 34.0 30.0 34.0 4 35.90223785142351 37.0 35.0 37.0 35.0 37.0 5 35.874647689102055 37.0 35.0 37.0 35.0 37.0 6 35.92542342694663 37.0 35.0 37.0 35.0 37.0 7 36.14341902547349 37.0 35.0 37.0 35.0 37.0 8 36.11263424555338 37.0 35.0 37.0 35.0 37.0 9 37.983092813293595 39.0 39.0 39.0 35.0 39.0 10 37.717379093376245 39.0 38.0 39.0 35.0 39.0 11 37.32274356001211 39.0 37.0 39.0 35.0 39.0 12 35.86330461706312 35.0 35.0 39.0 33.0 39.0 13 35.405383895889095 35.0 35.0 39.0 32.0 39.0 14 36.18187960588507 36.0 35.0 41.0 32.0 41.0 15 36.52171468141629 36.0 35.0 41.0 33.0 41.0 16 36.732394418822466 36.0 35.0 41.0 33.0 41.0 17 36.68861694853614 36.0 35.0 41.0 33.0 41.0 18 36.67685290934385 36.0 35.0 40.0 33.0 41.0 19 36.56169286087036 36.0 35.0 40.0 33.0 41.0 20 36.32527932665183 35.0 35.0 40.0 33.0 41.0 21 36.1428828528122 35.0 35.0 40.0 32.0 41.0 22 36.10121457741997 35.0 35.0 40.0 32.0 41.0 23 36.16424693584486 35.0 35.0 40.0 32.0 41.0 24 36.11593659587029 35.0 35.0 40.0 32.0 41.0 25 36.00850092102133 35.0 35.0 40.0 32.0 41.0 26 35.86390244023948 35.0 35.0 40.0 32.0 41.0 27 35.782311408583496 35.0 35.0 40.0 32.0 41.0 28 35.83019579954491 36.0 35.0 40.0 32.0 41.0 29 35.86139158289877 36.0 35.0 40.0 32.0 41.0 30 35.820694770168124 36.0 35.0 40.0 32.0 41.0 31 35.526276819530885 35.0 35.0 40.0 31.0 41.0 32 35.28276413509309 35.0 35.0 40.0 31.0 41.0 33 35.104797157350795 35.0 35.0 40.0 30.0 41.0 34 35.00286145572434 35.0 35.0 40.0 30.0 41.0 35 34.808646142234586 35.0 34.0 40.0 29.0 41.0 36 34.6066809230888 35.0 34.0 40.0 27.0 41.0 37 34.49551819437473 35.0 34.0 40.0 27.0 41.0 38 34.45673192487854 35.0 34.0 40.0 27.0 41.0 39 34.48424673657046 35.0 34.0 40.0 27.0 41.0 40 34.27248033099477 35.0 34.0 40.0 26.0 41.0 41 34.225013170791854 35.0 34.0 40.0 26.0 41.0 42 34.20723914047973 35.0 34.0 40.0 26.0 41.0 43 34.10859146632325 35.0 34.0 39.0 26.0 41.0 44 33.98882132933456 35.0 34.0 39.0 25.0 41.0 45 33.87315250842868 35.0 34.0 39.0 24.0 41.0 46 33.89575396088991 35.0 34.0 39.0 25.0 41.0 47 33.83611300352591 35.0 34.0 39.0 25.0 41.0 48 33.82321496849596 35.0 34.0 39.0 24.0 41.0 49 33.830339650746716 35.0 34.0 39.0 24.0 41.0 50 33.536731875059935 35.0 34.0 38.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 1.0 13 3.0 14 12.0 15 24.0 16 82.0 17 229.0 18 538.0 19 1204.0 20 2248.0 21 3649.0 22 5642.0 23 8627.0 24 12007.0 25 17361.0 26 23535.0 27 28654.0 28 30447.0 29 31946.0 30 35942.0 31 42785.0 32 54501.0 33 75381.0 34 171532.0 35 436129.0 36 75540.0 37 85634.0 38 143874.0 39 318297.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.632443365595027 23.694659321744695 30.565142176051452 14.107755136608823 2 30.806886922991655 25.180312188244553 31.509204608718505 12.503596280045285 3 27.085811289641594 24.316893611138443 34.51108650625908 14.08620859296088 4 24.98464964448203 26.876261811678226 33.275398455374365 14.863690088465376 5 22.585261416865837 32.10179683228445 32.000976444521385 13.311965306328332 6 20.532361538547764 38.977448366136805 29.479657198226956 11.010532897088476 7 86.85143969520982 4.3820438827120745 7.378072094984139 1.388444327093969 8 89.47881028206045 2.6968675311023738 6.502759327598382 1.3215628592387967 9 87.1620586539264 3.304218514334679 7.644726140939305 1.8889966907996258 10 66.07228927667133 15.000130773819828 11.230295187647975 7.697284761860875 11 60.5204424389691 14.112736996411815 16.344361095162242 9.022459469456841 12 51.73051127581692 19.538729600840938 19.10368869354463 9.6270704297975 13 17.77384349238336 52.74033425788348 19.78221799871219 9.70360425102097 14 11.033823091667466 52.22284357084766 27.75325595674749 8.99007738073739 15 9.214946077594957 19.654371021517896 61.1649082777337 9.965774623153441 16 10.972733035833272 13.106276769712286 58.317962220066185 17.603027974388258 17 12.125161754760478 13.177704184637687 29.597727275557872 45.09940678504396 18 21.17944285370893 19.025535767885188 39.720741848743266 20.07427952966262 19 32.88500746656238 21.230444643442066 25.802421931143225 20.08212595885233 20 35.50583936242158 20.325116170743282 24.007582390620154 20.16146207621498 21 20.154425199243256 29.206277641537753 28.711392143358 21.927905015860997 22 20.93022531706424 23.38534810122641 24.768374655784626 30.916051925924727 23 15.956025123518986 31.988584068261446 24.79851490759273 27.25687590062684 24 17.107208377495446 20.2081047386205 47.67110508859615 15.013581795287909 25 12.648755220054975 22.19704999171766 44.75005386635912 20.404140921868247 26 11.98187101217691 39.80294253549263 29.23386469019682 18.981321762133632 27 15.160671205971257 37.80727177166144 30.47671416454834 16.555342857818967 28 11.018690692515877 28.01704543331594 47.0671791339784 13.897084740189783 29 11.13090708457828 23.69441022875455 44.5269288204326 20.647753866234574 30 16.063820115006234 32.916829096053995 34.00573910249305 17.013611686446726 31 34.491781799522485 24.801192657236836 24.06281876118583 16.644206782054844 32 35.689296349666776 24.403577971710508 26.295003319164096 13.61212235945862 33 30.993831212098943 25.98058569234774 24.65136322366184 18.374219871891476 34 17.538326070196895 28.378915274755794 27.90059446042099 26.182164194626317 35 18.50866781332473 24.49686329652154 34.422596221508435 22.571872668645295 36 36.273045772082405 21.723275124453085 26.02971928465475 15.97395981880976 37 19.024913035409813 35.73799402924103 29.486818621693757 15.750274313655401 38 18.646540783372544 36.968700220322745 22.944017595928823 21.44074140037588 39 19.818585575274035 34.48113307419359 27.326061478640902 18.374219871891476 40 26.147042083015222 25.356047292795107 23.645027543457388 24.851883080732286 41 15.386038088809123 22.094485953023554 27.50964301238117 35.00983294578616 42 23.27879857468991 22.12960806463465 23.215342135449298 31.37625122522614 43 22.681099944825903 24.945106132295777 24.83469566441196 27.53909825846636 44 18.336046371151046 31.093655227901408 29.92217089522775 20.6481275057198 45 14.312198208274122 45.36942358636614 20.141036451022714 20.177341754337018 46 21.926285911425023 35.60896386034352 24.13175524620974 18.332994982021713 47 20.244472315182342 28.051918451936885 26.221209520832268 25.482399712048505 48 23.49756449328881 22.373407828743588 34.177800085438896 19.951227592528706 49 20.972322032399525 22.239208980300482 35.446243864528284 21.34222512277171 50 19.138374892422966 37.10084405159712 25.431833835048128 18.32894722093178 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2454.0 1 3165.0 2 3876.0 3 9967.0 4 16058.0 5 11897.0 6 7736.0 7 8109.5 8 8483.0 9 8894.0 10 9305.0 11 9260.0 12 9215.0 13 8481.5 14 7748.0 15 7293.0 16 6838.0 17 6130.0 18 5422.0 19 5195.5 20 4969.0 21 4742.5 22 4516.0 23 5319.5 24 6123.0 25 6945.0 26 7767.0 27 8621.5 28 9476.0 29 11396.5 30 13317.0 31 16092.5 32 18868.0 33 20560.5 34 22253.0 35 27536.5 36 32820.0 37 33093.0 38 33366.0 39 54281.0 40 75196.0 41 119437.5 42 163679.0 43 197230.0 44 230781.0 45 223688.0 46 216595.0 47 186076.5 48 155558.0 49 143236.0 50 130914.0 51 121989.0 52 113064.0 53 100519.5 54 87975.0 55 75115.5 56 62256.0 57 53489.0 58 44722.0 59 37966.5 60 31211.0 61 26867.5 62 22524.0 63 19073.0 64 15622.0 65 12277.5 66 8933.0 67 7178.0 68 5423.0 69 4683.0 70 3943.0 71 3275.5 72 2608.0 73 2259.0 74 1910.0 75 1381.5 76 853.0 77 758.5 78 664.0 79 528.5 80 393.0 81 283.5 82 174.0 83 141.5 84 109.0 85 90.5 86 72.0 87 44.0 88 16.0 89 15.5 90 15.0 91 9.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1605826.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.296386740449925 #Duplication Level Percentage of deduplicated Percentage of total 1 80.95107042763867 10.76356739459283 2 7.226043044538216 1.9216052584663672 3 2.269763007652301 0.9053894027673542 4 1.1349860350094916 0.6036485306598416 5 0.6659646439977255 0.44274617310299064 6 0.48606699568530487 0.38777608538402514 7 0.35795048230847415 0.33316136326928364 8 0.28795605894203563 0.30630200991592804 9 0.2551804590077594 0.3053680264415428 >10 2.9462473612244096 9.294354752801517 >50 0.9996463206703934 9.784932526454524 >100 2.387412898417581 61.30292103947544 >500 0.02887236058752428 2.3350442923408394 >1k 0.002366586933403629 0.7209102328319629 >5k 4.7331738668072586E-4 0.5922729114955567 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9411 0.5860535325745131 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4670 0.2908160659996787 No Hit TTCGCCGGGGGAGGAGCTACTCTAGTATTAATAAATATTAGCCCACCAAC 2627 0.16359182128076144 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1936 0.12056100723241497 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.035122111611096095 0.0 2 0.0 0.0 0.0 0.1251692275501829 0.0 3 0.0 0.0 0.0 0.1815887898190713 0.0 4 0.0 0.0 0.0 0.28085234639369394 0.0 5 0.0 0.0 0.0 0.4712216641155393 0.0 6 0.0 0.0 0.0 0.6689392250467984 0.0 7 0.0 0.0 0.0 0.7820274425747248 0.0 8 0.0 0.0 0.0 1.0341095486061378 0.0 9 0.0 0.0 0.0 1.1216657346437284 0.0 10 0.0 0.0 0.0 1.2628391868110243 0.0 11 0.0 0.0 0.0 1.4169654744661002 0.0 12 0.0 0.0 0.0 1.535471464529781 0.0 13 0.0 0.0 0.0 1.5872828064809015 0.0 14 0.0 0.0 0.0 1.6050306820290616 0.0 15 0.0 0.0 0.0 1.6339254688864173 0.0 16 0.0 0.0 0.0 1.6978800941073318 0.0 17 0.0 0.0 0.0 1.7812639725599162 0.0 18 0.0 0.0 0.0 1.911788699398316 0.0 19 0.0 0.0 0.0 1.9650945992903341 0.0 20 0.0 0.0 0.0 2.020829155836311 0.0 21 0.0 0.0 0.0 2.101971197377549 0.0 22 0.0 0.0 0.0 2.174519530758625 0.0 23 0.0 0.0 0.0 2.2725998956300373 0.0 24 0.0 0.0 0.0 2.3447123162783514 0.0 25 0.0 0.0 0.0 2.3965859314770093 0.0 26 0.0 0.0 0.0 2.4619105681437468 0.0 27 0.0 0.0 0.0 2.5117291661736703 0.0 28 0.0 0.0 0.0 2.571324664066966 0.0 29 0.0 0.0 0.0 2.63552838227803 0.0 30 0.0 0.0 0.0 2.7282532478612254 0.0 31 0.0 0.0 0.0 2.825959973247413 0.0 32 6.227324753740442E-5 0.0 0.0 2.8950210047663942 0.0 33 6.227324753740442E-5 0.0 0.0 2.967195698662246 0.0 34 6.227324753740442E-5 0.0 0.0 3.043044514162805 0.0 35 6.227324753740442E-5 0.0 0.0 3.1538908947793844 0.0 36 6.227324753740442E-5 0.0 0.0 3.2342856573501737 0.0 37 6.227324753740442E-5 0.0 0.0 3.314867239663575 0.0 38 6.227324753740442E-5 0.0 0.0 3.3884119450052497 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTA 40 8.3164196E-9 44.0 33 AACGTAG 45 4.802132E-10 44.0 1 TCGTTAG 145 0.0 44.0 1 GGTACAA 35 1.4465695E-7 44.0 8 AATCATC 20 7.8574184E-4 44.0 18 TCACCGT 40 8.3164196E-9 44.0 26 CGTATCG 25 4.443633E-5 44.0 12 CGAGTAC 40 8.3164196E-9 44.0 41 CGACGGT 165 0.0 44.0 28 CGTGCCT 25 4.443633E-5 44.0 16 CGTGCCG 20 7.8574184E-4 44.0 41 TTAGCCG 25 4.443633E-5 44.0 3 TAGACGT 25 4.443633E-5 44.0 39 TAGACCG 25 4.443633E-5 44.0 1 CGGCCCA 20 7.8574184E-4 44.0 20 CACATCG 30 2.528348E-6 44.0 17 CTATACG 70 0.0 44.0 1 CGTTGCG 20 7.8574184E-4 44.0 36 GGCGTAA 25 4.443633E-5 44.0 1 CGCATAA 40 8.3164196E-9 44.0 18 >>END_MODULE