##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545893_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2989082 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4429563993226 31.0 31.0 33.0 30.0 34.0 2 31.839959559490172 31.0 31.0 34.0 30.0 34.0 3 31.796492367890878 31.0 31.0 34.0 30.0 34.0 4 35.59423093779294 37.0 35.0 37.0 33.0 37.0 5 35.545320268898614 37.0 35.0 37.0 33.0 37.0 6 35.604427379376006 37.0 35.0 37.0 33.0 37.0 7 36.00234787804416 37.0 35.0 37.0 35.0 37.0 8 36.00340238240369 37.0 35.0 37.0 35.0 37.0 9 37.77562341882892 39.0 38.0 39.0 35.0 39.0 10 37.24347542155083 39.0 37.0 39.0 33.0 39.0 11 36.871179512639664 39.0 37.0 39.0 32.0 39.0 12 36.544637450561744 39.0 35.0 39.0 32.0 39.0 13 36.40066448494889 39.0 35.0 39.0 32.0 39.0 14 37.52259188607071 40.0 36.0 41.0 32.0 41.0 15 37.61500186344838 40.0 36.0 41.0 32.0 41.0 16 37.69751649503092 40.0 35.0 41.0 33.0 41.0 17 37.60113104959984 40.0 35.0 41.0 32.0 41.0 18 37.39651705774549 39.0 36.0 41.0 32.0 41.0 19 37.216937507903765 38.0 36.0 41.0 32.0 41.0 20 36.96432817835041 38.0 35.0 41.0 32.0 41.0 21 36.83672679438035 38.0 35.0 41.0 32.0 41.0 22 36.73821293627943 38.0 35.0 41.0 32.0 41.0 23 36.6340943473615 38.0 35.0 40.0 31.0 41.0 24 36.67145665458492 38.0 35.0 41.0 32.0 41.0 25 36.649320426806625 38.0 35.0 41.0 31.0 41.0 26 36.40395847286893 38.0 35.0 40.0 31.0 41.0 27 36.393842323495974 38.0 35.0 40.0 31.0 41.0 28 36.37177166768928 38.0 35.0 40.0 31.0 41.0 29 36.31137385993426 38.0 35.0 40.0 31.0 41.0 30 36.14328245260585 38.0 35.0 40.0 30.0 41.0 31 35.93045155669868 38.0 35.0 40.0 30.0 41.0 32 35.605419991823574 38.0 35.0 40.0 28.0 41.0 33 35.186689425047554 38.0 34.0 40.0 25.0 41.0 34 34.76761493997154 38.0 34.0 40.0 23.0 41.0 35 34.38828008064014 38.0 34.0 40.0 21.0 41.0 36 34.1898673238138 38.0 33.0 40.0 18.0 41.0 37 34.07680217538361 38.0 33.0 40.0 18.0 41.0 38 33.96626121330897 38.0 33.0 40.0 18.0 41.0 39 33.82809939640331 38.0 33.0 40.0 18.0 41.0 40 33.71834462888606 38.0 33.0 40.0 17.0 41.0 41 33.66244218124494 37.0 33.0 40.0 15.0 41.0 42 33.632838108824046 37.0 33.0 40.0 15.0 41.0 43 33.53525831676749 37.0 33.0 40.0 15.0 41.0 44 33.40169523619626 37.0 33.0 40.0 15.0 41.0 45 33.301291500199724 37.0 33.0 40.0 15.0 41.0 46 33.23281428880171 37.0 32.0 40.0 15.0 41.0 47 33.158593842524226 37.0 32.0 40.0 15.0 41.0 48 33.02678113213354 36.0 32.0 40.0 13.0 41.0 49 32.96101813198835 36.0 32.0 40.0 13.0 41.0 50 32.82178642138289 36.0 32.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 5.0 13 4.0 14 23.0 15 67.0 16 201.0 17 639.0 18 1499.0 19 2977.0 20 5286.0 21 8656.0 22 13234.0 23 20139.0 24 30506.0 25 48583.0 26 73450.0 27 88105.0 28 87369.0 29 81432.0 30 82089.0 31 89804.0 32 105360.0 33 130276.0 34 203110.0 35 306199.0 36 201718.0 37 257244.0 38 404179.0 39 746926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.630422986053908 23.011212138041042 29.52555333042051 19.83281154548453 2 36.171339561778495 23.84809115306974 27.94142147990587 12.039147805245893 3 26.073623942066494 23.13804037493786 38.459299544140976 12.329036138854672 4 22.717944840589855 25.65142073720293 38.501954780765466 13.128679641441753 5 21.26539184940393 29.811861969661592 36.619370094229595 12.303376086704882 6 18.99897694342276 38.19507126268199 33.11200562580752 9.693946168087727 7 81.78153024908652 3.009720041136376 13.973387146956826 1.2353625628202907 8 83.11019905107989 1.9434394907868036 13.536028787433734 1.410332670699566 9 78.31210384994456 5.160279978936677 14.765871260808503 1.7617449103102558 10 36.624321447186794 37.613989847050036 18.50715370137052 7.254535004392652 11 27.990165542464208 21.356356232448626 36.054112935008135 14.599365290079028 12 26.764571865208115 21.25083888632028 36.47340554725498 15.511183701216627 13 19.54687091220649 28.62484200834905 37.15883338095107 14.669453698493385 14 15.563039086916985 31.196233492423424 37.135548640017234 16.10517878064235 15 14.8894543542131 24.756062229139246 45.578642539749666 14.775840876897991 16 18.080434059687892 23.28209798192221 42.46919288263085 16.168275075759045 17 18.27427283694459 22.18691223593063 36.22747719868508 23.311337728439703 18 19.545064337478866 23.649334477943395 38.80669717324583 17.998904011331906 19 22.37312325322624 24.05992876742759 35.01981544835505 18.54713253099112 20 23.451481090180863 24.88218790919754 34.63923037240196 17.027100628219635 21 21.39108261332409 24.558710667689944 36.981287231330555 17.068919487655407 22 20.789593594287478 21.776351401533983 36.285287589969094 21.148767414209445 23 17.92667447731444 25.68159722617178 35.89791113124364 20.49381716527014 24 17.377308484678576 24.236738905122042 40.89964745028741 17.48630515991197 25 17.227697333161153 26.12240145971238 38.02083716672878 18.629064040397687 26 18.075281976205403 28.904727270780796 34.83410625737267 18.185884495641137 27 17.407752614347814 28.500087986880253 35.93976344576696 18.15239595300497 28 16.02993828874551 26.381109651725847 40.49293395095886 17.096018108569787 29 17.518187858345808 23.188992473274403 39.36971284160153 19.923106826778255 30 18.752914774502674 25.911567497980986 37.32945432744903 18.006063400067312 31 22.413436633722327 25.074353932076804 33.91211749962029 18.600091934580583 32 23.111242849811415 25.618835481930574 34.493500011040176 16.776421657217835 33 22.152821501718588 26.39532806393401 33.0519202885702 18.399930145777198 34 18.844682079648535 27.48151439137501 33.99729415251907 19.67650937645739 35 19.118578881409075 27.176203262406318 33.519287861624406 20.185929994560205 36 23.318965488400785 26.945630799021238 31.098578091869012 18.636825620708965 37 19.34657530305291 30.115165793377365 32.363013125769044 18.175245777800676 38 19.226070077702786 30.01068555496303 30.505118293844063 20.25812607349012 39 19.939466364589528 29.872817139175172 30.94846511403836 19.239251382196944 40 21.46692529679681 27.70201687340796 30.234567000838386 20.596490828956853 41 18.91600832630219 27.386401577474288 30.16374258049796 23.533847515725565 42 20.78122982240032 27.36575978845679 29.450613934311605 22.402396454831283 43 20.796853348285527 27.04991030691028 30.830870481304963 21.32236586349923 44 19.577783413101415 28.99632730048891 30.79453825622716 20.63135103018251 45 18.89319195659403 30.831372307618192 29.54923953240493 20.726196203382845 46 20.824353430250493 29.339676864000385 30.103523422910445 19.73244628283868 47 20.171644672176942 27.33621894615136 31.38023647394083 21.11189990773087 48 20.72027465288674 26.77868991215363 31.588628214281172 20.912407220678457 49 20.44416981534799 25.89938984611329 32.739784321741595 20.91665601679713 50 19.092985739434383 29.439975216471144 31.252906410730784 20.214132633363686 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 821.0 1 2617.5 2 4414.0 3 44325.5 4 84237.0 5 60954.5 6 37672.0 7 37248.0 8 36824.0 9 36908.5 10 36993.0 11 36307.5 12 35622.0 13 34067.0 14 32512.0 15 30424.0 16 28336.0 17 26570.5 18 24805.0 19 23654.5 20 22504.0 21 22478.5 22 22453.0 23 23170.5 24 23888.0 25 27488.0 26 31088.0 27 34544.0 28 38000.0 29 46117.0 30 54234.0 31 64801.5 32 75369.0 33 86823.5 34 98278.0 35 104223.0 36 110168.0 37 119121.0 38 128074.0 39 143442.5 40 158811.0 41 187827.0 42 216843.0 43 242393.0 44 267943.0 45 268267.0 46 268591.0 47 253826.5 48 239062.0 49 218631.5 50 198201.0 51 184130.0 52 170059.0 53 154244.5 54 138430.0 55 123538.0 56 108646.0 57 99653.5 58 90661.0 59 80746.5 60 70832.0 61 61324.0 62 51816.0 63 42891.0 64 33966.0 65 26963.0 66 19960.0 67 15710.0 68 11460.0 69 9451.5 70 7443.0 71 5961.5 72 4480.0 73 3765.0 74 3050.0 75 2161.5 76 1273.0 77 961.5 78 650.0 79 503.5 80 357.0 81 254.0 82 151.0 83 101.0 84 51.0 85 37.0 86 23.0 87 17.5 88 12.0 89 11.0 90 10.0 91 8.0 92 6.0 93 3.0 94 0.0 95 1.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2989082.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.303531239742906 #Duplication Level Percentage of deduplicated Percentage of total 1 79.18179504452829 17.660336393945567 2 8.200335362179988 3.6579287185349965 3 2.892891850302138 1.9356511126923417 4 1.4496438170149941 1.2932870463717627 5 0.8995917401328098 1.0032036239533402 6 0.5925652116036622 0.7929778025152286 7 0.47346910110176277 0.739202302123331 8 0.3560166232567291 0.635234230293939 9 0.315353506672312 0.6330147108865545 >10 3.5253905742661455 18.548875146758697 >50 1.1940384789805958 19.131916322280997 >100 0.9146290970115631 31.532964945743974 >500 0.003362537317172174 0.5135211884843444 >1k 7.642130266300396E-4 0.29780410930690604 >5k 0.0 0.0 >10k+ 1.5284260532600792E-4 1.6240823461080147 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 47642 1.5938672809912877 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3550 0.11876556079759605 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06908475578789743 0.0 2 0.0 0.0 0.0 0.24355303735394346 0.0 3 0.0 0.0 0.0 0.34706307822936944 0.0 4 0.0 0.0 0.0 0.4894144757487416 0.0 5 0.0 0.0 0.0 0.8204860221298713 0.0 6 0.0 0.0 0.0 1.1193068641141326 0.0 7 0.0 0.0 0.0 1.3190337367793858 0.0 8 0.0 0.0 0.0 1.794631261370548 0.0 9 0.0 0.0 0.0 1.9901427930046751 0.0 10 0.0 0.0 0.0 2.318236836593978 0.0 11 0.0 0.0 0.0 2.6856406080529074 0.0 12 0.0 0.0 0.0 3.0061403467686736 0.0 13 0.0 0.0 0.0 3.1255415542296934 0.0 14 0.0 0.0 0.0 3.1712077487335577 0.0 15 0.0 0.0 0.0 3.243203097138185 0.0 16 0.0 0.0 0.0 3.4070995710388674 0.0 17 0.0 0.0 0.0 3.6336574239181125 0.0 18 0.0 0.0 0.0 3.931407703100818 0.0 19 0.0 0.0 0.0 4.095973278752473 0.0 20 0.0 0.0 0.0 4.266594225250428 0.0 21 0.0 0.0 0.0 4.469766971933189 0.0 22 0.0 0.0 0.0 4.711714165084799 0.0 23 0.0 0.0 0.0 4.969251429034065 0.0 24 0.0 0.0 0.0 5.162488014714886 0.0 25 0.0 0.0 0.0 5.3228382493354145 0.0 26 0.0 0.0 0.0 5.480010250638825 0.0 27 0.0 0.0 0.0 5.642568521037563 0.0 28 0.0 0.0 0.0 5.828177346757299 0.0 29 0.0 0.0 0.0 6.020979016299988 0.0 30 0.0 0.0 0.0 6.266438993644202 0.0 31 0.0 0.0 0.0 6.486841110414502 0.0 32 0.0 0.0 0.0 6.6867018034299495 0.0 33 0.0 0.0 0.0 6.885993759957071 0.0 34 0.0 0.0 0.0 7.096894631863562 0.0 35 0.0 0.0 0.0 7.338708004664977 0.0 36 0.0 0.0 0.0 7.5615857979138745 0.0 37 0.0 0.0 0.0 7.794567027602454 0.0 38 0.0 0.0 0.0 8.035544023215154 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGCG 25 4.4445558E-5 44.0 1 CGCGGAC 25 4.4445558E-5 44.0 32 GTATCGC 25 4.4445558E-5 44.0 25 GACTACG 20 7.858507E-4 44.0 1 TACGTCA 65 0.0 43.999996 39 CGTTTTT 33370 0.0 43.327538 1 CGACGGT 200 0.0 41.800003 28 GCGTAAG 265 0.0 41.509438 1 GCGCGAC 130 0.0 40.615383 9 CTATCGA 45 2.3530447E-8 39.11111 26 CACGACG 220 0.0 39.0 26 AGTACGG 480 0.0 38.958332 2 TACGGGA 1600 0.0 38.912502 4 CGTAAGG 505 0.0 38.772278 2 TAACGCG 80 0.0 38.5 1 TCGTCGG 40 4.127487E-7 38.5 2 CGTTTGG 275 0.0 38.4 2 ACGGGAT 1830 0.0 38.22951 5 GCGATAT 370 0.0 38.054054 9 CTTGCGG 255 0.0 37.960785 2 >>END_MODULE