##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545890_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1178510 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50177427429551 31.0 31.0 33.0 30.0 34.0 2 31.883135484637382 31.0 31.0 34.0 30.0 34.0 3 31.840770973517408 31.0 31.0 34.0 30.0 34.0 4 35.63105701266854 37.0 35.0 37.0 33.0 37.0 5 35.584114687189754 37.0 35.0 37.0 33.0 37.0 6 35.639463390213066 37.0 35.0 37.0 33.0 37.0 7 36.016443644941496 37.0 35.0 37.0 35.0 37.0 8 36.02535235169833 37.0 35.0 37.0 35.0 37.0 9 37.824814384264876 39.0 38.0 39.0 35.0 39.0 10 37.3135993754826 39.0 37.0 39.0 34.0 39.0 11 36.98358181093075 39.0 37.0 39.0 33.0 39.0 12 36.18661105972796 38.0 35.0 39.0 32.0 39.0 13 35.81222136426505 38.0 35.0 39.0 31.0 39.0 14 36.80403560427998 39.0 35.0 41.0 31.0 41.0 15 37.028222925558545 39.0 35.0 41.0 32.0 41.0 16 37.21909105565502 39.0 35.0 41.0 32.0 41.0 17 37.165956164987996 38.0 35.0 41.0 32.0 41.0 18 36.97335279293345 38.0 35.0 40.0 32.0 41.0 19 36.77256875206829 37.0 35.0 40.0 32.0 41.0 20 36.49149349602464 37.0 35.0 40.0 32.0 41.0 21 36.34322152548557 36.0 35.0 40.0 32.0 41.0 22 36.23733188517704 36.0 35.0 40.0 31.0 41.0 23 36.18714902716142 36.0 35.0 40.0 31.0 41.0 24 36.18995680987009 36.0 35.0 40.0 31.0 41.0 25 36.18152497645332 36.0 35.0 40.0 31.0 41.0 26 35.93056825992143 36.0 35.0 40.0 31.0 41.0 27 35.91212463195051 36.0 35.0 40.0 31.0 41.0 28 35.91964429661182 36.0 35.0 40.0 31.0 41.0 29 35.9044836276315 36.0 35.0 40.0 31.0 41.0 30 35.75663677015893 36.0 35.0 40.0 30.0 41.0 31 35.47508209518799 36.0 35.0 40.0 30.0 41.0 32 35.097809946457815 36.0 34.0 40.0 27.0 41.0 33 34.65688029800341 36.0 34.0 40.0 24.0 41.0 34 34.2447522719366 36.0 34.0 40.0 23.0 41.0 35 33.88083427378639 36.0 33.0 40.0 20.0 41.0 36 33.63789700554089 36.0 33.0 40.0 18.0 41.0 37 33.51407709735174 36.0 33.0 40.0 18.0 41.0 38 33.45955061900196 35.0 33.0 40.0 18.0 41.0 39 33.35638390849463 36.0 33.0 40.0 18.0 41.0 40 33.209117444909246 36.0 33.0 40.0 17.0 41.0 41 33.19708105998252 36.0 33.0 40.0 15.0 41.0 42 33.15801647843463 35.0 33.0 40.0 15.0 41.0 43 33.05193931320057 35.0 33.0 40.0 15.0 41.0 44 32.9343577907697 35.0 32.0 40.0 15.0 41.0 45 32.82032905957523 35.0 32.0 40.0 15.0 41.0 46 32.79698178208076 35.0 32.0 40.0 15.0 41.0 47 32.729178369296825 35.0 32.0 40.0 14.0 41.0 48 32.637902096715344 35.0 32.0 40.0 13.0 41.0 49 32.61257520088926 35.0 32.0 40.0 12.0 41.0 50 32.41397527386276 35.0 32.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 7.0 15 25.0 16 97.0 17 244.0 18 553.0 19 1255.0 20 2191.0 21 3611.0 22 5541.0 23 8520.0 24 12750.0 25 20547.0 26 30788.0 27 37035.0 28 35587.0 29 32592.0 30 33237.0 31 36491.0 32 43391.0 33 56511.0 34 100888.0 35 177153.0 36 67497.0 37 84659.0 38 134832.0 39 252503.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.173108416559895 20.906823022290858 29.671279836403595 20.248788724745655 2 34.57484450704704 23.25317562006262 30.14187406131471 12.030105811575634 3 25.813612103418727 23.051310553156103 39.117105497619875 12.017971845805295 4 22.903751347039904 26.18934077776175 37.81520733807944 13.091700537118905 5 21.483313675743098 30.433768063062683 35.88531281024344 12.197605450950777 6 19.421303170953152 37.77829632332352 32.8465604873951 9.953840018328227 7 81.57851863794113 3.18962079235645 13.715284554225251 1.5165760154771704 8 83.3907221830956 2.1087644568141126 13.006253659281636 1.4942597008086482 9 79.45049257112795 4.615913314269713 14.320710049129834 1.6128840654725034 10 43.09305818363866 32.68118217070708 17.77583558900646 6.449924056647801 11 40.49681377332394 18.11736854163308 29.913025769828007 11.472791915214975 12 37.697940619935345 19.394489652187932 30.677380760451754 12.230188967424969 13 19.405265971438514 38.182111310044036 30.404408957072913 12.008213761444535 14 13.679222068544178 38.925677338334 34.00658458562083 13.388516007500998 15 11.704694911371138 21.98012744906704 53.11554420412216 13.199633435439665 16 14.507980415948952 18.555888367514914 50.755360582430356 16.18077063410578 17 15.430331520309542 17.63438579222917 34.96177376517806 31.973508922283223 18 19.42020008315585 21.57266378732467 40.61492902054289 18.39220710897659 19 24.670049469245065 22.654029240311917 33.280583109180235 19.39533818126278 20 27.337824880569535 21.454548540105726 32.60634190630542 18.60128467301932 21 20.215356679196613 25.440429016300243 35.11128458816641 19.23292971633673 22 20.89171920475855 22.177325606061892 33.16204359742387 23.768911591755693 23 16.094475227193662 27.332139735768045 33.1820688835903 23.391316153447995 24 17.002571043096793 22.468710490364952 44.72308253642311 15.805635930115145 25 14.326480046838805 24.424145743353893 41.530237333582235 19.719136876225065 26 15.335975087186362 31.66141992855385 34.9268143672943 18.075790616965488 27 15.88039134160932 30.655573563228145 36.51016962096206 16.953865474200473 28 13.352623227634894 26.667911175976442 43.94014475906017 16.039320837328493 29 14.140991591076869 21.713010496304655 43.384443067941724 20.761554844676752 30 17.290392105285488 27.16701597780248 37.85262747028027 17.689964446631766 31 25.418536966169146 24.833051904523508 32.13676591628412 17.611645213023223 32 26.339530424009975 24.329110486970837 32.65292615251462 16.67843293650457 33 25.054517993059033 26.73842394209637 30.305979584390457 17.90107848045413 34 19.11439020458036 26.248992371723617 32.76102875665035 21.875588667045676 35 19.073066838635224 26.381108348677568 33.26760061433505 21.278224198352156 36 27.263578586520264 24.62108934162629 30.772585722649787 17.342746349203654 37 19.813323603533277 30.476788487157513 33.17256535795199 16.53732255135722 38 20.015528082069732 30.822224673528435 28.853637219879342 20.30861002452249 39 19.661182340412893 30.114636278012064 31.652255814545487 18.571925567029552 40 21.894850277044743 26.546147253735647 29.591433250460327 21.96756921875928 41 17.147414956173474 25.115442380633173 30.71607368626486 27.021068976928493 42 21.487386615302373 25.724516550559606 27.73306972363408 25.055027110503943 43 21.422389288168958 26.660783531747718 28.895554556176865 23.02127262390646 44 19.837846093796404 29.970301482380297 29.721597610542126 20.470254813281176 45 16.47045846025914 36.09897243129036 26.088790082392173 21.341779026058326 46 20.85319598476042 30.800417476304826 29.16767783048086 19.178708708453897 47 20.932872864888715 27.3671839865593 29.859059320667626 21.840883827884365 48 21.994128178802047 23.506885813442395 32.44563049952907 22.05335550822649 49 20.396941901214245 23.466410976572114 34.209892151954584 21.926754970259054 50 18.86568633274219 30.785568217494973 29.625119854731825 20.723625595031013 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 322.0 1 707.0 2 1092.0 3 12744.5 4 24397.0 5 18616.0 6 12835.0 7 13239.0 8 13643.0 9 14504.0 10 15365.0 11 15317.0 12 15269.0 13 14488.5 14 13708.0 15 12662.5 16 11617.0 17 10578.0 18 9539.0 19 9030.5 20 8522.0 21 8116.0 22 7710.0 23 7460.0 24 7210.0 25 7749.5 26 8289.0 27 10210.0 28 12131.0 29 13116.5 30 14102.0 31 16274.0 32 18446.0 33 23805.0 34 29164.0 35 31929.0 36 34694.0 37 39036.5 38 43379.0 39 52100.5 40 60822.0 41 78475.0 42 96128.0 43 110531.0 44 124934.0 45 125748.5 46 126563.0 47 117042.0 48 107521.0 49 100039.5 50 92558.0 51 84234.5 52 75911.0 53 67919.5 54 59928.0 55 51432.5 56 42937.0 57 35921.5 58 28906.0 59 25032.5 60 21159.0 61 18545.0 62 15931.0 63 12468.5 64 9006.0 65 7585.0 66 6164.0 67 4720.0 68 3276.0 69 2701.0 70 2126.0 71 1673.0 72 1220.0 73 1055.0 74 890.0 75 640.0 76 390.0 77 379.5 78 369.0 79 267.5 80 166.0 81 119.5 82 73.0 83 69.0 84 65.0 85 36.0 86 7.0 87 15.5 88 24.0 89 12.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1178510.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.37370720037689 #Duplication Level Percentage of deduplicated Percentage of total 1 81.16008114340822 18.970119730048538 2 8.066842704868163 3.7710403883016954 3 2.532016921099699 1.7754786642055247 4 1.2352336224442904 1.1548795606029496 5 0.7055410599786728 0.8245555076892523 6 0.4939061792253076 0.6926651050601527 7 0.35835498128420074 0.5863259084433414 8 0.2955321076447968 0.5526144761919798 9 0.2295973546494347 0.48298872074012805 >10 2.952571887161654 16.171740577171096 >50 0.9809360151394889 16.60038186244302 >100 0.9868142807412522 36.6805982947794 >500 0.0018369588249092558 0.2587355762559911 >1k 3.6739176498185115E-4 0.2865584526937412 >5k 0.0 0.0 >10k+ 3.6739176498185115E-4 1.191317175373171 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13873 1.1771643855376706 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3337 0.2831541522770278 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06830659052532435 0.0 2 0.0 0.0 0.0 0.2386063758474684 0.0 3 0.0 0.0 0.0 0.3193014908655845 0.0 4 0.0 0.0 0.0 0.4577814358809005 0.0 5 0.0 0.0 0.0 0.7503542608887493 0.0 6 0.0 0.0 0.0 1.0079676880128297 0.0 7 0.0 0.0 0.0 1.1936258495897363 0.0 8 0.0 0.0 0.0 1.7203078463483552 0.0 9 0.0 0.0 0.0 1.935409966822513 0.0 10 0.0 0.0 0.0 2.3300608395346667 0.0 11 0.0 0.0 0.0 2.655641445554132 0.0 12 0.0 0.0 0.0 2.984446462058022 0.0 13 0.0 0.0 0.0 3.1079074424485156 0.0 14 0.0 0.0 0.0 3.144818457204436 0.0 15 0.0 0.0 0.0 3.219064751253702 0.0 16 0.0 0.0 0.0 3.3798610109375398 0.0 17 0.0 0.0 0.0 3.594793425596728 0.0 18 0.0 0.0 0.0 3.904251979194067 0.0 19 0.0 0.0 0.0 4.031531340421379 0.0 20 0.0 0.0 0.0 4.19046083614055 0.0 21 0.0 0.0 0.0 4.377476644237214 0.0 22 0.0 0.0 0.0 4.575353624491943 0.0 23 0.0 0.0 0.0 4.794104419987951 0.0 24 0.0 0.0 0.0 4.95023376976012 0.0 25 0.0 0.0 0.0 5.078531365877252 0.0 26 0.0 0.0 0.0 5.218878074857235 0.0 27 0.0 0.0 0.0 5.350994051811186 0.0 28 0.0 0.0 0.0 5.489898261363925 0.0 29 0.0 0.0 0.0 5.647894375100763 0.0 30 0.0 0.0 0.0 5.864014730464739 0.0 31 0.0 0.0 0.0 6.045430246667402 0.0 32 0.0 0.0 0.0 6.212929886042545 0.0 33 0.0 0.0 0.0 6.380344672510204 0.0 34 0.0 0.0 0.0 6.557008425893713 0.0 35 0.0 0.0 0.0 6.778813926059176 0.0 36 0.0 0.0 0.0 6.966423704508235 0.0 37 0.0 0.0 0.0 7.1534395126048995 0.0 38 0.0 0.0 0.0 7.337146057309654 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTA 20 7.856561E-4 44.000004 25 AAGTACG 40 8.312782E-9 44.000004 1 AGTCACG 20 7.856561E-4 44.000004 1 CTATCGC 20 7.856561E-4 44.000004 24 GACACGC 20 7.856561E-4 44.000004 12 CGTTGGA 20 7.856561E-4 44.000004 37 TCTACGC 20 7.856561E-4 44.000004 32 CTACGCT 20 7.856561E-4 44.000004 33 ACTCGCT 20 7.856561E-4 44.000004 10 CTCGATA 20 7.856561E-4 44.000004 39 CGTAAGT 20 7.856561E-4 44.000004 41 ACCGTTG 20 7.856561E-4 44.000004 1 CGCAATA 20 7.856561E-4 44.000004 23 CGCGTGA 20 7.856561E-4 44.000004 14 ATACGCC 20 7.856561E-4 44.000004 23 CGGTAAT 20 7.856561E-4 44.000004 25 GCGCTAT 20 7.856561E-4 44.000004 38 CCCGCCG 20 7.856561E-4 44.000004 44 ACGCGAG 60 0.0 44.0 1 TCACGAC 120 0.0 44.0 25 >>END_MODULE