##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545887_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1865929 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.573559336930828 31.0 31.0 33.0 30.0 34.0 2 31.979921529704505 31.0 31.0 34.0 30.0 34.0 3 32.01028281354757 33.0 31.0 34.0 30.0 34.0 4 35.779861934725275 37.0 35.0 37.0 35.0 37.0 5 35.7220451582027 37.0 35.0 37.0 33.0 37.0 6 35.76811282744413 37.0 35.0 37.0 33.0 37.0 7 36.040141398734896 37.0 35.0 37.0 35.0 37.0 8 36.03328744019735 37.0 35.0 37.0 35.0 37.0 9 37.82861244988421 39.0 38.0 39.0 35.0 39.0 10 37.36324158100335 39.0 37.0 39.0 34.0 39.0 11 37.084327431536785 39.0 37.0 39.0 33.0 39.0 12 36.41940181003672 38.0 35.0 39.0 33.0 39.0 13 36.14126957670951 38.0 35.0 39.0 32.0 39.0 14 37.10626127789428 39.0 35.0 41.0 32.0 41.0 15 37.30391349295713 39.0 35.0 41.0 32.0 41.0 16 37.44329178655779 39.0 35.0 41.0 33.0 41.0 17 37.38897353543463 39.0 35.0 41.0 33.0 41.0 18 37.25578250833767 39.0 35.0 41.0 32.0 41.0 19 37.1027139832223 38.0 35.0 41.0 32.0 41.0 20 36.868309029979166 38.0 35.0 41.0 32.0 41.0 21 36.74087224111957 38.0 35.0 41.0 32.0 41.0 22 36.670402785958096 38.0 35.0 41.0 32.0 41.0 23 36.59951691623851 38.0 35.0 40.0 32.0 41.0 24 36.643588796787014 38.0 35.0 41.0 32.0 41.0 25 36.61255438979725 38.0 35.0 41.0 32.0 41.0 26 36.38440262196472 38.0 35.0 40.0 31.0 41.0 27 36.36127366046618 38.0 35.0 40.0 31.0 41.0 28 36.37670190023307 38.0 35.0 40.0 31.0 41.0 29 36.316144397777194 38.0 35.0 40.0 31.0 41.0 30 36.18011832175822 38.0 35.0 40.0 31.0 41.0 31 35.936352347811734 38.0 35.0 40.0 30.0 41.0 32 35.67842774296342 38.0 35.0 40.0 30.0 41.0 33 35.385718320472 38.0 35.0 40.0 28.0 41.0 34 35.05033739225876 37.0 34.0 40.0 25.0 41.0 35 34.7754909216803 37.0 34.0 40.0 24.0 41.0 36 34.58141065388876 37.0 34.0 40.0 23.0 41.0 37 34.47949305680977 37.0 34.0 40.0 23.0 41.0 38 34.36986080392126 37.0 34.0 40.0 23.0 41.0 39 34.24335223901874 37.0 34.0 40.0 22.0 41.0 40 34.09075479292085 37.0 33.0 40.0 21.0 41.0 41 34.036462266249146 36.0 33.0 40.0 21.0 41.0 42 34.00659724994895 36.0 33.0 40.0 21.0 41.0 43 33.92545857854184 36.0 33.0 40.0 20.0 41.0 44 33.783265601209905 36.0 33.0 40.0 19.0 41.0 45 33.68527366260989 36.0 33.0 40.0 20.0 41.0 46 33.669395780868406 35.0 33.0 40.0 20.0 41.0 47 33.61595484072545 35.0 33.0 40.0 20.0 41.0 48 33.50016426134113 35.0 33.0 40.0 20.0 41.0 49 33.454686110779136 36.0 33.0 40.0 19.0 41.0 50 33.30813283892367 35.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 1.0 14 10.0 15 47.0 16 142.0 17 312.0 18 808.0 19 1580.0 20 2924.0 21 4743.0 22 7287.0 23 10753.0 24 16067.0 25 25145.0 26 36939.0 27 46127.0 28 47722.0 29 46324.0 30 48838.0 31 54783.0 32 65660.0 33 85634.0 34 150967.0 35 244189.0 36 119592.0 37 154329.0 38 243075.0 39 451927.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.18439715551878 21.793326541363577 27.841145081082935 18.181131222034708 2 34.82790609932104 23.990248289189996 28.56502042682224 12.616825184666727 3 27.317652493744404 23.44853421539619 36.076024328899976 13.157788961959433 4 25.019172755233456 25.657835855490752 35.8187798142373 13.504211575038493 5 22.17340531177767 30.817410523122795 33.45915091088675 13.550033254212781 6 20.365029966306327 38.91938010503079 30.7364856862185 9.979104242444379 7 83.90914123742115 3.623235396416477 11.16017812038936 1.307445245773017 8 85.41305698126777 2.5059367210649492 10.698370623962647 1.3826356737046266 9 81.05286964294997 4.739140663980248 12.061284218209803 2.1467054748599756 10 42.30809425224647 31.6174409637237 16.5161696934878 9.55829509054203 11 40.107045873664006 20.514124599596233 26.139043875731605 13.239785651008157 12 36.048424136180955 20.798379788298483 28.483720441667394 14.669475633853162 13 22.17560260867375 32.37893831973243 30.18646475830538 15.258994313288449 14 16.716445266674135 34.01592450730976 33.914044960981904 15.3535852650342 15 16.306247451001617 22.823805193016454 45.81128220848703 15.058665147494892 16 19.528556552794882 19.429463822042532 43.37640928459764 17.66557034056494 17 19.99068560486492 19.145905337234158 33.0664242851684 27.796984772732507 18 22.697648195617305 21.534688618913155 36.510713966072665 19.25694921939688 19 27.262505700913593 22.36687462384689 30.91977240291565 19.45084727232387 20 28.386449859560575 23.08051378160691 30.516970367039686 18.01606599179283 21 22.585639646524598 25.31302102062833 33.25887533770042 18.84246399514665 22 22.42872049258037 21.7532928637692 32.996539525351714 22.821447118298714 23 19.44859638282057 26.357058601908218 32.38461913609789 21.80972587917332 24 19.262630035762346 23.306728176688395 39.642987487734 17.787654299815266 25 19.060157165679936 23.640717304892096 37.519219648764775 19.779905880663197 26 19.012674115681786 29.213705344629943 31.20333088772402 20.57028965196425 27 17.979676611489502 28.921947190916697 34.268560057751394 18.829816139842407 28 16.757336425984054 24.934228472787552 39.42700928063179 18.881425820596604 29 17.820506568041978 23.52704738497553 38.485708727395306 20.166737319587185 30 20.28994672358916 26.773741123054524 34.4950960084762 18.44121614488011 31 26.58364814524025 23.346815446889995 31.23473615555576 18.834800252313993 32 26.788050349182633 25.086699440332406 30.938369037621477 17.18688117286349 33 25.854467131386027 25.250692818429854 29.421323105005605 19.473516945178517 34 20.116467454013524 26.28336876697881 32.128660844008536 21.471502934999133 35 20.384108934477144 25.809556526534504 33.460919466925056 20.3454150720633 36 27.251036882968215 26.081967749040825 28.076845367642605 18.590150000348352 37 21.144855993984766 30.494836620257253 29.508035943489812 18.85227144226817 38 21.39690202574696 30.905355991573096 26.77299082655342 20.92475115612652 39 21.331519044936865 29.036153036905475 28.63753122439278 20.994796693764876 40 23.881401703923355 25.609816879420382 28.423589536364997 22.085191880291266 41 19.265309666123418 24.92576084084657 29.24687916849998 26.562050324530034 42 21.905495868277946 24.985463005291198 28.172936912390554 24.9361042140403 43 21.74836234390483 25.854788687029355 28.56732490893276 23.829524060133046 44 20.59253058396113 28.186013508552577 30.371734401469723 20.849721506016575 45 19.205929057322116 32.22346616618317 26.967799953803173 21.60280482269154 46 21.388595171627646 29.715332148222146 28.865192619869244 20.030880060280964 47 20.645051339038087 26.95992184054163 29.83709455182914 22.55793226859114 48 21.99210152154771 25.13370015686556 31.900249152030973 20.973949169555755 49 22.13937400619209 24.33945771784457 32.160494852698044 21.3606734232653 50 19.49425728417319 30.566114787861704 28.93084356371545 21.008784364249657 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 500.0 1 1687.0 2 2874.0 3 23028.5 4 43183.0 5 30233.5 6 17284.0 7 17112.5 8 16941.0 9 17185.5 10 17430.0 11 17033.0 12 16636.0 13 15569.5 14 14503.0 15 13623.5 16 12744.0 17 11451.0 18 10158.0 19 9569.5 20 8981.0 21 9672.0 22 10363.0 23 9974.0 24 9585.0 25 10954.0 26 12323.0 27 14549.0 28 16775.0 29 21664.5 30 26554.0 31 28825.5 32 31097.0 33 38574.0 34 46051.0 35 50727.0 36 55403.0 37 59069.5 38 62736.0 39 75278.0 40 87820.0 41 109377.5 42 130935.0 43 153404.0 44 175873.0 45 170072.0 46 164271.0 47 152911.0 48 141551.0 49 133258.0 50 124965.0 51 117624.0 52 110283.0 53 108154.0 54 106025.0 55 96474.0 56 86923.0 57 79039.5 58 71156.0 59 68136.0 60 65116.0 61 59414.0 62 53712.0 63 47996.0 64 42280.0 65 33423.5 66 24567.0 67 21670.0 68 18773.0 69 15278.5 70 11784.0 71 9580.5 72 7377.0 73 6291.5 74 5206.0 75 3994.0 76 2782.0 77 2061.5 78 1341.0 79 853.5 80 366.0 81 358.5 82 351.0 83 252.5 84 154.0 85 140.0 86 126.0 87 82.0 88 38.0 89 29.0 90 20.0 91 11.0 92 2.0 93 2.0 94 2.0 95 3.5 96 5.0 97 4.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1865929.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.892139778687124 #Duplication Level Percentage of deduplicated Percentage of total 1 80.90962888376876 14.476463894300917 2 6.937635689899378 2.4825829499457632 3 2.2807540055988 1.2242270840692286 4 1.167335463655742 0.8354451713738833 5 0.7643539250540913 0.6837963633727973 6 0.5648351308927002 0.6063665468307138 7 0.4236139611445656 0.5305552143501334 8 0.32848677288025563 0.47018650046587085 9 0.2950499506237219 0.475116746242893 >10 3.5441026568377207 15.178630906874943 >50 1.3125144519466603 16.917315622046267 >100 1.4689603887093623 44.40835135138802 >500 0.0021223369909093323 0.2126496405534368 >1k 3.0319099870133317E-4 0.17288632766423548 >5k 0.0 0.0 >10k+ 3.0319099870133317E-4 1.3254256805209494 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24433 1.3094281722402086 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3187 0.17079963921456817 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02551008103738138 0.0 2 0.0 0.0 0.0 0.09491250738908072 0.0 3 0.0 0.0 0.0 0.13864407488173452 0.0 4 0.0 0.0 0.0 0.1966848685024993 0.0 5 0.0 0.0 0.0 0.3241816810821848 0.0 6 0.0 0.0 0.0 0.43972734225150045 0.0 7 0.0 0.0 0.0 0.5199554752619204 0.0 8 0.0 0.0 0.0 0.7351297932557991 0.0 9 0.0 0.0 0.0 0.8251653733877334 0.0 10 0.0 0.0 0.0 0.9996093098933561 0.0 11 0.0 0.0 0.0 1.1557781673364849 0.0 12 0.0 0.0 0.0 1.3020859850508781 0.0 13 0.0 0.0 0.0 1.3549282957711681 0.0 14 0.0 0.0 0.0 1.3756150421586244 0.0 15 0.0 0.0 0.0 1.4090568290647716 0.0 16 0.0 0.0 0.0 1.4891777768607488 0.0 17 0.0 0.0 0.0 1.5804995795659964 0.0 18 0.0 0.0 0.0 1.7148026532627982 0.0 19 0.0 0.0 0.0 1.7822221531473061 0.0 20 5.3592607221389454E-5 0.0 0.0 1.8574125810789157 0.0 21 5.3592607221389454E-5 0.0 0.0 1.948144865104728 0.0 22 5.3592607221389454E-5 0.0 0.0 2.0526504491864372 0.0 23 5.3592607221389454E-5 0.0 0.0 2.1544764029070773 0.0 24 5.3592607221389454E-5 0.0 0.0 2.2369018328135746 0.0 25 5.3592607221389454E-5 0.0 0.0 2.306250666558052 0.0 26 5.3592607221389454E-5 0.0 0.0 2.3855141326384874 0.0 27 5.3592607221389454E-5 0.0 0.0 2.4789260470253693 0.0 28 5.3592607221389454E-5 0.0 0.0 2.555134734494185 0.0 29 5.3592607221389454E-5 0.0 0.0 2.654227465246534 0.0 30 5.3592607221389454E-5 0.0 0.0 2.7596977162582284 0.0 31 5.3592607221389454E-5 0.0 0.0 2.8642568929471595 0.0 32 5.3592607221389454E-5 0.0 0.0 2.9584191038351406 0.0 33 5.3592607221389454E-5 0.0 0.0 3.0494193508970597 0.0 34 5.3592607221389454E-5 0.0 0.0 3.1592841957009083 0.0 35 5.3592607221389454E-5 0.0 0.0 3.2783669689468358 0.0 36 5.3592607221389454E-5 0.0 0.0 3.379710589202483 0.0 37 5.3592607221389454E-5 0.0 0.0 3.4945595464779204 0.0 38 5.3592607221389454E-5 0.0 0.0 3.636311992578496 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 20 7.8577443E-4 44.000004 1 TAGCGAT 20 7.8577443E-4 44.000004 34 CGTAAGA 20 7.8577443E-4 44.000004 11 CAATCGT 20 7.8577443E-4 44.000004 25 TTCGACA 20 7.8577443E-4 44.000004 12 TACGTAC 20 7.8577443E-4 44.000004 12 GTCGACG 45 4.802132E-10 44.0 22 GTAGCGT 30 2.52857E-6 44.0 11 TATCGGC 35 1.4467332E-7 44.0 38 AATCGTC 25 4.443912E-5 44.0 38 TACGTCG 50 2.7284841E-11 44.0 1 CGTTTTT 15500 0.0 42.935486 1 CGTTGAT 160 0.0 42.625004 25 CGTAAGG 245 0.0 42.204082 2 GCGTAAG 80 0.0 41.250004 1 TTCGTTC 75 0.0 41.066666 23 ACGTAGG 185 0.0 40.43243 2 TACGGGA 790 0.0 40.37975 4 CGCGATT 60 3.6379788E-12 40.333332 40 TGTTACG 60 3.6379788E-12 40.333332 1 >>END_MODULE