##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545886_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3181814 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.463876895381063 31.0 31.0 33.0 30.0 34.0 2 31.864537964821324 31.0 31.0 34.0 30.0 34.0 3 31.93168676735975 31.0 31.0 34.0 30.0 34.0 4 35.70248826612744 37.0 35.0 37.0 33.0 37.0 5 35.624879078412505 37.0 35.0 37.0 33.0 37.0 6 35.66685733358393 37.0 35.0 37.0 33.0 37.0 7 35.97151593399237 37.0 35.0 37.0 35.0 37.0 8 35.95777817307989 37.0 35.0 37.0 35.0 37.0 9 37.72807932833283 39.0 38.0 39.0 35.0 39.0 10 37.22142337672787 39.0 37.0 39.0 33.0 39.0 11 36.97779537081677 39.0 37.0 39.0 33.0 39.0 12 36.46040151938485 39.0 35.0 39.0 32.0 39.0 13 36.23824711312478 39.0 35.0 39.0 32.0 39.0 14 37.23699436862117 39.0 35.0 41.0 32.0 41.0 15 37.374826121200044 39.0 35.0 41.0 32.0 41.0 16 37.49982085690741 40.0 35.0 41.0 32.0 41.0 17 37.41716046255375 39.0 35.0 41.0 32.0 41.0 18 37.28728612043319 39.0 35.0 41.0 32.0 41.0 19 37.1781666055904 39.0 35.0 41.0 32.0 41.0 20 37.0047762062773 38.0 35.0 41.0 32.0 41.0 21 36.87478149256996 38.0 35.0 41.0 32.0 41.0 22 36.81452561337652 38.0 35.0 41.0 31.0 41.0 23 36.73175396173378 38.0 35.0 41.0 31.0 41.0 24 36.78887357966242 38.0 35.0 41.0 32.0 41.0 25 36.759874712978196 38.0 35.0 41.0 31.0 41.0 26 36.51260224513438 38.0 35.0 41.0 31.0 41.0 27 36.49932805625973 38.0 35.0 41.0 31.0 41.0 28 36.447708131273544 38.0 35.0 41.0 31.0 41.0 29 36.37510992157304 38.0 35.0 41.0 31.0 41.0 30 36.23430345079882 38.0 35.0 40.0 30.0 41.0 31 36.04488508756326 38.0 35.0 40.0 30.0 41.0 32 35.86735239709172 38.0 35.0 40.0 29.0 41.0 33 35.609320343678164 38.0 35.0 40.0 28.0 41.0 34 35.31578590074719 38.0 34.0 40.0 26.0 41.0 35 35.05249426899247 38.0 34.0 40.0 24.0 41.0 36 34.89451897565351 38.0 34.0 40.0 24.0 41.0 37 34.80661220297604 38.0 34.0 40.0 23.0 41.0 38 34.7014558361991 38.0 34.0 40.0 23.0 41.0 39 34.580930563508744 38.0 34.0 40.0 23.0 41.0 40 34.4606582911509 37.0 34.0 40.0 23.0 41.0 41 34.37213991766961 37.0 34.0 40.0 22.0 41.0 42 34.35028351751548 37.0 33.0 40.0 22.0 41.0 43 34.25540587853344 37.0 33.0 40.0 22.0 41.0 44 34.12916436975888 37.0 33.0 40.0 22.0 41.0 45 34.04914680745009 37.0 33.0 40.0 22.0 41.0 46 34.00646109420601 36.0 33.0 40.0 22.0 41.0 47 33.92977685056386 36.0 33.0 40.0 22.0 41.0 48 33.79685550443866 36.0 33.0 40.0 21.0 41.0 49 33.705423069984604 36.0 33.0 40.0 20.0 41.0 50 33.59108860543074 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 5.0 13 12.0 14 29.0 15 85.0 16 279.0 17 674.0 18 1443.0 19 2977.0 20 5229.0 21 8391.0 22 12794.0 23 18359.0 24 26715.0 25 40026.0 26 58054.0 27 72819.0 28 76631.0 29 77727.0 30 83515.0 31 95763.0 32 114547.0 33 145373.0 34 239679.0 35 343331.0 36 223833.0 37 291665.0 38 447603.0 39 794251.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.97967763043346 22.155631975973456 28.513671760825744 16.351018632767346 2 34.14228487271726 23.77338838788188 29.632404659731836 12.451922079669018 3 27.90367381625701 24.12963171323025 35.17317479902974 12.793519671482997 4 25.451330593177353 26.422820441421152 33.872281660713035 14.253567304688458 5 22.4683466726842 30.853877693667826 32.71357156640835 13.96420406723963 6 20.629521398799554 39.050459894890146 30.27169407136935 10.048324634940949 7 85.0303317541503 3.4154416317232874 9.956395942691811 1.597830671434597 8 85.9924873044119 2.58773768674096 9.670426995418337 1.7493480134288177 9 80.85208626274193 5.283181229323901 11.131323201167636 2.7334093067665175 10 39.14443144696704 34.11591626663281 16.54160174039086 10.19805054600929 11 36.47347079370447 21.540542596141698 26.828940975179567 15.157045634974263 12 33.68814141870015 20.417063976712654 29.402818643704503 16.49197596088269 13 24.66266098521158 27.27362441676352 30.472742907033535 17.590971690991367 14 18.62359019100425 29.540255967193556 33.75505293521243 18.081100906589764 15 18.21090107718427 23.43798223277665 41.318474304280514 17.032642385758564 16 22.329275061332936 21.039790509438955 38.29897033578958 18.331964093438526 17 22.02567466231527 20.7867587483115 31.72979313058526 25.457773458787976 18 23.345770683012898 22.549212493250707 34.066447630188314 20.038569193548085 19 26.227931613852977 24.268954753483392 29.627156081405136 19.875957551258498 20 27.39732743648749 24.02761443629326 29.673890428541704 18.901167698677547 21 24.367012025215804 24.4721093062008 32.202102322763054 18.95877634582034 22 23.54474523023659 22.198909175709204 31.96981344604053 22.28653214801368 23 20.97891328657175 25.147164479130456 31.35139263325889 22.522529601038904 24 21.71299139421726 23.515799477907887 35.411655112461006 19.35955401541385 25 21.016627621853445 24.273103330364375 33.19446076986273 21.51580827791945 26 20.486175496116367 27.242604375994322 30.5874887721281 21.68373135576121 27 20.074649240967574 26.5446063157683 32.12359364815165 21.257150795112473 28 18.99073924497158 25.422133411946767 34.91018016766536 20.676947175416288 29 21.08900771698157 23.77596553412613 34.54340825705085 20.591618491841444 30 22.577906816677533 24.712726765298036 32.817505988722154 19.891860429302277 31 25.317381845701853 24.716403912988 30.079539533109102 19.886674708201046 32 26.992684047527604 24.33344626681509 29.642461815806957 19.03140786985034 33 26.19323442539382 25.393093373779863 28.89213511537758 19.52153708544874 34 21.651454170482623 26.192102995335365 31.701727379413125 20.454715454768884 35 21.634671291282267 26.51201484436237 31.10210087704687 20.7512129873085 36 25.707630930029225 26.66796362075219 27.89701095035725 19.727394498861344 37 22.53123532676643 29.050912466913527 28.971586648371023 19.44626555794902 38 22.183760584371054 29.124392563487365 26.884978191685622 21.80686866045595 39 21.877300181594524 28.52872606632569 27.919293836786185 21.674679915293606 40 23.877228524357488 26.423480442288582 27.855210895420036 21.844080137933897 41 20.62433567769832 25.058944363184022 28.942452324365913 25.374267634751746 42 22.094503324204368 25.871028287637177 27.986393924974873 24.048074463183582 43 22.24589495174765 25.60573936754317 28.722703464124557 23.425662216584627 44 21.551542610598858 26.834158124893538 29.040321024421917 22.573978240085687 45 20.29722667635506 29.422964384467477 27.577696244972206 22.702112694205255 46 21.860768731296044 28.283677172832856 28.663963386923307 21.19159070894779 47 21.531868299026907 26.91804109228258 29.641141814072096 21.908948794618414 48 22.498298140620413 25.077172958570177 30.57683447241102 21.84769442839839 49 21.754005733836106 24.706503899976553 31.298498278026308 22.24099208816103 50 20.52225554353586 27.59334769411411 29.936539345165997 21.947857417184032 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 864.0 1 3134.5 2 5405.0 3 34761.5 4 64118.0 5 44811.0 6 25504.0 7 24704.5 8 23905.0 9 23962.5 10 24020.0 11 22919.5 12 21819.0 13 20680.0 14 19541.0 15 17712.0 16 15883.0 17 14826.5 18 13770.0 19 13752.5 20 13735.0 21 14839.0 22 15943.0 23 16848.5 24 17754.0 25 20892.0 26 24030.0 27 27834.5 28 31639.0 29 38328.0 30 45017.0 31 52855.5 32 60694.0 33 67645.5 34 74597.0 35 81960.5 36 89324.0 37 97456.0 38 105588.0 39 122567.5 40 139547.0 41 163067.5 42 186588.0 43 216419.5 44 246251.0 45 247310.5 46 248370.0 47 246068.5 48 243767.0 49 232089.0 50 220411.0 51 211746.5 52 203082.0 53 196126.5 54 189171.0 55 179120.5 56 169070.0 57 163352.0 58 157634.0 59 150081.5 60 142529.0 61 125565.5 62 108602.0 63 96620.5 64 84639.0 65 69956.0 66 55273.0 67 45845.5 68 36418.0 69 29866.0 70 23314.0 71 19371.0 72 15428.0 73 12174.0 74 8920.0 75 6948.0 76 4976.0 77 3674.0 78 2372.0 79 1764.0 80 1156.0 81 885.5 82 615.0 83 466.0 84 317.0 85 212.0 86 107.0 87 81.5 88 56.0 89 44.5 90 33.0 91 20.5 92 8.0 93 7.5 94 7.0 95 4.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3181814.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.247200799990214 #Duplication Level Percentage of deduplicated Percentage of total 1 79.51312587378372 14.508919740538287 2 7.598711874814502 2.7731044280202064 3 2.6022412169658438 1.4245085404795996 4 1.3079193151707664 0.9546346549642664 5 0.8099199492042545 0.7389385972523953 6 0.5699363265558026 0.6239845556323514 7 0.44726803724773845 0.571297278095389 8 0.33973740439176464 0.49594053097632046 9 0.30397817457045717 0.4992075711181449 >10 3.716185576025692 16.535281832005836 >50 1.4532815292347374 19.212157950193756 >100 1.3320998899503378 39.72276049928283 >500 0.004370962566069548 0.5245832102120394 >1k 0.0010490310158566916 0.32592240318227783 >5k 0.0 0.0 >10k+ 1.748385026427819E-4 1.0887582080463583 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34127 1.0725642667987505 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4287 0.1347344627938654 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.050128637311923324 0.0 2 0.0 0.0 0.0 0.16905450790021037 0.0 3 0.0 0.0 0.0 0.23621745331436722 0.0 4 0.0 0.0 0.0 0.32465756954994857 0.0 5 0.0 0.0 0.0 0.5317092702464694 0.0 6 0.0 0.0 0.0 0.712235221794863 0.0 7 0.0 0.0 0.0 0.8381068157975293 0.0 8 0.0 0.0 0.0 1.1479929373621462 0.0 9 0.0 0.0 0.0 1.2652845200882263 0.0 10 0.0 0.0 0.0 1.4843733794621559 0.0 11 3.1428612734748165E-5 0.0 0.0 1.7070765293005814 0.0 12 3.1428612734748165E-5 0.0 0.0 1.909539652537829 0.0 13 3.1428612734748165E-5 0.0 0.0 1.9910026167462962 0.0 14 3.1428612734748165E-5 0.0 0.0 2.0260455199455407 0.0 15 3.1428612734748165E-5 0.0 0.0 2.0827427373190264 0.0 16 3.1428612734748165E-5 0.0 0.0 2.199971462819637 0.0 17 3.1428612734748165E-5 0.0 0.0 2.342720221860863 0.0 18 3.1428612734748165E-5 0.0 0.0 2.537514763590832 0.0 19 3.1428612734748165E-5 0.0 0.0 2.635383463646838 0.0 20 3.1428612734748165E-5 0.0 0.0 2.7429950336506157 0.0 21 3.1428612734748165E-5 0.0 0.0 2.8753409218766404 0.0 22 3.1428612734748165E-5 0.0 0.0 3.026858263870861 0.0 23 3.1428612734748165E-5 0.0 0.0 3.1883384761019973 0.0 24 3.1428612734748165E-5 0.0 0.0 3.3090557776161647 0.0 25 6.285722546949633E-5 0.0 0.0 3.4148130594685924 0.0 26 6.285722546949633E-5 0.0 0.0 3.52374463120723 0.0 27 6.285722546949633E-5 0.0 0.0 3.645090504976092 0.0 28 6.285722546949633E-5 0.0 0.0 3.764299233078992 0.0 29 6.285722546949633E-5 0.0 0.0 3.9039679880722127 0.0 30 6.285722546949633E-5 0.0 0.0 4.060765337005871 0.0 31 6.285722546949633E-5 0.0 0.0 4.201156950091992 0.0 32 6.285722546949633E-5 0.0 0.0 4.328442831667721 0.0 33 6.285722546949633E-5 0.0 0.0 4.466665870475144 0.0 34 6.285722546949633E-5 0.0 0.0 4.615606066225116 0.0 35 6.285722546949633E-5 0.0 0.0 4.788337721815291 0.0 36 6.285722546949633E-5 0.0 0.0 4.94381506901409 0.0 37 6.285722546949633E-5 0.0 0.0 5.102906706677386 0.0 38 6.285722546949633E-5 0.0 0.0 5.288618379327013 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCTA 25 4.4446217E-5 44.0 42 CGTTTTT 21095 0.0 42.863235 1 CGGTCTA 470 0.0 41.659573 31 CGACGGT 500 0.0 38.72 28 GGGCGAT 3970 0.0 38.292194 7 CTATGCG 230 0.0 38.26087 1 CGTAAGG 455 0.0 37.714287 2 ACGTAAG 105 0.0 37.714283 1 TACGGGA 1490 0.0 37.208054 4 TATAGCG 250 0.0 36.96 1 CGGGATT 1200 0.0 36.85 6 ACGGGAT 1440 0.0 36.666668 5 TAGGGAT 5190 0.0 36.624275 5 ACGGGTA 265 0.0 36.5283 5 GTTTTTT 25950 0.0 36.293644 2 ATAGGGA 4660 0.0 36.06867 4 ATAGCGG 470 0.0 36.042553 2 GTAGGGA 4945 0.0 35.94742 4 TAAGGGA 4285 0.0 35.939323 4 GCGGGAT 1995 0.0 35.839603 5 >>END_MODULE