##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545880_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2749580 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53239549312986 31.0 31.0 33.0 30.0 34.0 2 31.933578219218937 31.0 31.0 34.0 30.0 34.0 3 31.92151383120331 31.0 31.0 34.0 30.0 34.0 4 35.70234290327977 37.0 35.0 37.0 33.0 37.0 5 35.646863157282205 37.0 35.0 37.0 33.0 37.0 6 35.69768691945679 37.0 35.0 37.0 33.0 37.0 7 36.01566566530161 37.0 35.0 37.0 35.0 37.0 8 36.0091337586104 37.0 35.0 37.0 35.0 37.0 9 37.795218178776395 39.0 38.0 39.0 35.0 39.0 10 37.33462346976629 39.0 37.0 39.0 34.0 39.0 11 37.049834883873174 39.0 37.0 39.0 33.0 39.0 12 36.36098858734788 38.0 35.0 39.0 32.0 39.0 13 36.043385535245385 38.0 35.0 39.0 32.0 39.0 14 37.10912102939358 39.0 35.0 41.0 32.0 41.0 15 37.2734275780301 39.0 35.0 41.0 32.0 41.0 16 37.41219713556252 39.0 35.0 41.0 33.0 41.0 17 37.339881363699185 39.0 35.0 41.0 32.0 41.0 18 37.16854646891525 39.0 35.0 40.0 32.0 41.0 19 36.98904669076732 38.0 35.0 40.0 32.0 41.0 20 36.717416114461116 38.0 35.0 40.0 32.0 41.0 21 36.60125691923857 38.0 35.0 40.0 32.0 41.0 22 36.493552469831755 37.0 35.0 40.0 32.0 41.0 23 36.42250852857527 37.0 35.0 40.0 31.0 41.0 24 36.438469148015336 37.0 35.0 40.0 32.0 41.0 25 36.419667367379745 37.0 35.0 40.0 32.0 41.0 26 36.17678809127212 37.0 35.0 40.0 31.0 41.0 27 36.16255100779028 37.0 35.0 40.0 31.0 41.0 28 36.16723426850646 37.0 35.0 40.0 31.0 41.0 29 36.12630474472465 37.0 35.0 40.0 31.0 41.0 30 35.98447581085111 37.0 35.0 40.0 31.0 41.0 31 35.74470937379527 37.0 35.0 40.0 30.0 41.0 32 35.395560412863055 37.0 34.0 40.0 29.0 41.0 33 34.99732904661803 37.0 34.0 40.0 25.0 41.0 34 34.62122978782214 37.0 34.0 40.0 23.0 41.0 35 34.27912808501662 37.0 34.0 40.0 22.0 41.0 36 34.07197499254431 36.0 33.0 40.0 20.0 41.0 37 33.97950377875894 36.0 33.0 40.0 20.0 41.0 38 33.89082550789575 36.0 33.0 40.0 19.0 41.0 39 33.799844339862815 36.0 33.0 40.0 18.0 41.0 40 33.67258890448723 36.0 33.0 40.0 18.0 41.0 41 33.63382043803053 36.0 33.0 40.0 18.0 41.0 42 33.5773223546869 36.0 33.0 40.0 18.0 41.0 43 33.468667942012964 36.0 33.0 40.0 18.0 41.0 44 33.32152074134959 35.0 33.0 40.0 17.0 41.0 45 33.23017442663971 35.0 33.0 40.0 17.0 41.0 46 33.1835065719128 35.0 33.0 40.0 17.0 41.0 47 33.14428821856429 35.0 33.0 40.0 17.0 41.0 48 33.04730540664392 35.0 33.0 40.0 17.0 41.0 49 32.9860302300715 35.0 32.0 40.0 15.0 41.0 50 32.82368070759898 35.0 32.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 8.0 13 5.0 14 24.0 15 58.0 16 152.0 17 462.0 18 1138.0 19 2556.0 20 4239.0 21 7314.0 22 11460.0 23 17391.0 24 26309.0 25 41883.0 26 63399.0 27 78500.0 28 78641.0 29 73734.0 30 75058.0 31 84070.0 32 99942.0 33 127165.0 34 223721.0 35 378057.0 36 174228.0 37 213386.0 38 334507.0 39 632170.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.3585202103594 22.01278013369315 28.94805752151238 19.68064213443508 2 34.35626532052168 24.31655016402505 29.19154925479528 12.135635260657992 3 25.698506681020373 23.74966358498389 38.08628954240284 12.465540191592899 4 22.860036805621224 25.638606623557052 37.78558907178551 13.715767499036216 5 22.396075036914727 30.03458710057536 35.0566995686614 12.512638293848516 6 19.796405269168382 38.12291331767034 32.10988587347886 9.970795539682424 7 80.85220288189468 3.796943533194161 13.799380268986535 1.551473315924614 8 82.23506862866329 2.996966809476356 13.128950603364878 1.6390139584954795 9 77.39167436481208 5.398206271503284 14.551713352584757 2.6584060110998773 10 41.22295041424508 31.975174390270517 18.408775158387826 8.393100037096575 11 39.86783436015682 19.493668123858917 28.798143716494884 11.840353799489376 12 35.79452134507816 19.722757657533148 31.2453902050495 13.237330792339193 13 20.85482146364172 33.25369692825814 31.963027080499568 13.928454527600579 14 15.51135082448956 35.957382582067076 33.380370820270734 15.150895773172628 15 14.622051367845271 22.647858945729894 48.70638424777602 14.023705438648811 16 16.38031990340343 19.46828242858909 46.95091613991955 17.200481528087927 17 16.760086995104707 18.629827100866315 35.03160482691902 29.57848107710996 18 20.17431753213218 21.6088638992137 38.97624364448388 19.240574924170236 19 25.46788964132704 22.756821041759103 32.52482197281039 19.250467344103463 20 27.768059121756778 21.76197819303312 32.229067712159676 18.240894973050427 21 21.41410688177831 25.085940398169903 33.90397806210403 19.59597465794776 22 21.32987583558216 21.937895969566263 32.84410709999345 23.88812109485812 23 18.260752551298744 26.310018257333844 32.571592752347634 22.857636439019778 24 18.858843896158685 21.876031975792667 42.23288647720743 17.03223765084122 25 16.565366346860248 23.758864990289428 39.33837167858364 20.337396984266686 26 16.72600906320238 29.760945308010676 33.52075589726431 19.992289731522632 27 16.643341892216267 29.53534721666582 35.38409502542206 18.43721586569585 28 14.532255835436686 26.006699204969486 41.70135075175118 17.759694207842653 29 15.987096211057688 22.38498243368078 41.227969362593555 20.399951992667972 30 17.792899279162636 27.13643538285847 36.38152008670415 18.68914525127474 31 25.345907374944538 24.601248190632752 31.205311356643563 18.84753307777915 32 26.04361393376443 24.86990740403989 32.15185591981321 16.934622742382473 33 24.22911862902698 27.218920707889932 30.39242357014526 18.159537092937832 34 18.816728373060613 26.41657998676161 32.849598847824026 21.91709279235374 35 18.98820910830018 26.825806123116987 33.24835065719128 20.93763411139156 36 25.475963601713715 25.773281737574465 30.68395900464798 18.066795656063835 37 19.341972228485805 30.364019232028166 31.769288400410247 18.524720139075786 38 20.000618276245827 30.52633493115312 28.125568268608298 21.347478523992756 39 20.252947722924954 29.136122607816468 30.560049171146137 20.050880498112438 40 22.738927399821062 25.932360578706565 29.27083409102481 22.05787793044756 41 18.056394067457575 25.299754871653125 30.865041206293327 25.778809854595973 42 20.791466333039953 25.815142676336023 28.259952429098263 25.13343856152576 43 21.518231875413697 26.285032623164266 28.88993955440467 23.30679594701736 44 19.719993599022395 29.12215683849897 29.52505473563235 21.632794826846283 45 17.575775209304695 34.26257828468348 26.44669367685247 21.714952829159362 46 21.41148830003128 30.188646993358986 28.952967362288057 19.446897344321677 47 20.565868241695096 27.28609460353945 30.007601160904574 22.14043599386088 48 21.87057659715302 23.973988754646165 32.28405792884732 21.871376719353503 49 19.70977385637079 24.42274820154351 33.55188792470123 22.315590017384473 50 18.547050822307405 30.210613984681295 30.287534823500316 20.954800369510977 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 947.0 1 2395.5 2 3844.0 3 38192.5 4 72541.0 5 52183.0 6 31825.0 7 31713.0 8 31601.0 9 32247.0 10 32893.0 11 31685.5 12 30478.0 13 28678.0 14 26878.0 15 24708.5 16 22539.0 17 21116.0 18 19693.0 19 18426.0 20 17159.0 21 15796.5 22 14434.0 23 15950.5 24 17467.0 25 17948.5 26 18430.0 27 21265.0 28 24100.0 29 31452.5 30 38805.0 31 44578.0 32 50351.0 33 57937.0 34 65523.0 35 73772.0 36 82021.0 37 88707.5 38 95394.0 39 113046.5 40 130699.0 41 165641.0 42 200583.0 43 237164.0 44 273745.0 45 275781.0 46 277817.0 47 250903.0 48 223989.0 49 211099.0 50 198209.0 51 177537.0 52 156865.0 53 146444.5 54 136024.0 55 121817.0 56 107610.0 57 99348.0 58 91086.0 59 87609.0 60 84132.0 61 75918.0 62 67704.0 63 54268.0 64 40832.0 65 33052.0 66 25272.0 67 20109.0 68 14946.0 69 12491.0 70 10036.0 71 8431.0 72 6826.0 73 4922.5 74 3019.0 75 2201.0 76 1383.0 77 1145.0 78 907.0 79 749.5 80 592.0 81 400.5 82 209.0 83 154.0 84 99.0 85 67.0 86 35.0 87 23.5 88 12.0 89 9.0 90 6.0 91 11.5 92 17.0 93 9.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2749580.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.29917341604918 #Duplication Level Percentage of deduplicated Percentage of total 1 80.52964349526874 14.736259114525396 2 8.322894309617812 3.046041725902905 3 2.939139091210035 1.6135144777182486 4 1.390050859818483 1.0174712696378676 5 0.8308309385550389 0.7601759712018779 6 0.537989856603569 0.5906861809238485 7 0.36645622203543915 0.46940921694917076 8 0.2763231284794535 0.4045187877528606 9 0.22703729749110052 0.3739135390830717 >10 2.2948245747736 9.666673494218383 >50 0.8679372322365417 11.572485719436902 >100 1.4001374802106814 51.76861095156552 >500 0.015122452138082188 1.7772234130287075 >1k 0.001209796171046575 0.40262133583094767 >5k 2.0163269517442918E-4 0.32561705358395465 >10k+ 2.0163269517442918E-4 1.4747777486403022 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39970 1.4536765615112126 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 8825 0.3209581099658857 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC 3146 0.1144174746688585 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05819070548956568 0.0 2 0.0 0.0 0.0 0.22247034092479578 0.0 3 0.0 0.0 0.0 0.3071378174121138 0.0 4 0.0 0.0 0.0 0.4570152532386765 0.0 5 0.0 0.0 0.0 0.7956124208060867 0.0 6 0.0 0.0 0.0 1.039467845998298 0.0 7 0.0 0.0 0.0 1.2214592774169146 0.0 8 0.0 0.0 0.0 1.664872453247405 0.0 9 0.0 0.0 0.0 1.8525011092603234 0.0 10 0.0 0.0 0.0 2.2907862291695458 0.0 11 0.0 0.0 0.0 2.5731202583667323 0.0 12 0.0 0.0 0.0 2.892441754740724 0.0 13 0.0 0.0 0.0 3.0019857578248312 0.0 14 0.0 0.0 0.0 3.041591806748667 0.0 15 0.0 0.0 0.0 3.1200037823958566 0.0 16 0.0 0.0 0.0 3.2700266949861434 0.0 17 0.0 0.0 0.0 3.459182857018163 0.0 18 0.0 0.0 0.0 3.7459902966998597 0.0 19 0.0 0.0 0.0 3.8717185897482524 0.0 20 0.0 0.0 0.0 4.009921515285971 0.0 21 0.0 0.0 0.0 4.167363742826177 0.0 22 0.0 0.0 0.0 4.343717949650492 0.0 23 0.0 0.0 0.0 4.540948072069189 0.0 24 0.0 0.0 0.0 4.677696229969668 0.0 25 0.0 0.0 0.0 4.795496039395108 0.0 26 0.0 0.0 0.0 4.918896704223918 0.0 27 0.0 0.0 0.0 5.038369496432183 0.0 28 0.0 0.0 0.0 5.157187643203689 0.0 29 0.0 0.0 0.0 5.3024825609729485 0.0 30 0.0 0.0 0.0 5.480837073298467 0.0 31 0.0 0.0 0.0 5.6522450701561695 0.0 32 0.0 0.0 0.0 5.799867616145011 0.0 33 0.0 0.0 0.0 5.948253915143404 0.0 34 0.0 0.0 0.0 6.098604150452069 0.0 35 0.0 0.0 0.0 6.297143563744281 0.0 36 0.0 0.0 0.0 6.467569592446846 0.0 37 0.0 0.0 0.0 6.6386866357771 0.0 38 3.636919093097855E-5 0.0 0.0 6.8096218331527 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTATCG 20 7.8583957E-4 44.000004 38 GTATCGC 20 7.8583957E-4 44.000004 39 CCGCGTA 20 7.8583957E-4 44.000004 18 AGCGTAC 55 1.8189894E-12 44.0 34 CGTATAT 25 4.4444627E-5 44.0 34 CGTTGCG 25 4.4444627E-5 44.0 26 CCGTACA 30 2.5290083E-6 44.0 13 TCTACCG 50 2.7284841E-11 44.0 1 TATTCGC 30 2.5290083E-6 44.0 17 GTCGTAA 25 4.4444627E-5 44.0 30 CGTACGA 55 1.8189894E-12 44.0 36 CGCCCGT 30 2.5290083E-6 44.0 23 AGTCGAC 25 4.4444627E-5 44.0 44 CGTTTTT 28980 0.0 43.31677 1 ATTAGCG 240 0.0 42.166664 1 TAACGCG 100 0.0 41.800003 1 TATAGCG 85 0.0 41.411766 1 CGATCTA 80 0.0 41.250004 10 TATTACG 60 3.6379788E-12 40.333332 1 TACTACG 60 3.6379788E-12 40.333332 27 >>END_MODULE