##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545879_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2026456 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.463548184613927 31.0 31.0 33.0 30.0 34.0 2 31.849142048976145 31.0 31.0 34.0 30.0 34.0 3 31.710036141914753 31.0 31.0 34.0 30.0 34.0 4 35.58358533321227 37.0 35.0 37.0 33.0 37.0 5 35.564508679191654 37.0 35.0 37.0 33.0 37.0 6 35.62687223408749 37.0 35.0 37.0 33.0 37.0 7 36.002969223116615 37.0 35.0 37.0 35.0 37.0 8 36.00382441069532 37.0 35.0 37.0 35.0 37.0 9 37.77006162482679 39.0 38.0 39.0 35.0 39.0 10 37.23863977308167 39.0 37.0 39.0 33.0 39.0 11 37.00468305258047 39.0 37.0 39.0 33.0 39.0 12 36.77941193887259 39.0 35.0 39.0 33.0 39.0 13 36.652704524549264 39.0 35.0 39.0 32.0 39.0 14 37.82569865814999 40.0 36.0 41.0 33.0 41.0 15 37.88021649618842 40.0 36.0 41.0 33.0 41.0 16 37.93972284619059 40.0 36.0 41.0 33.0 41.0 17 37.83344666748254 40.0 36.0 41.0 33.0 41.0 18 37.55125450540253 39.0 36.0 41.0 33.0 41.0 19 37.25934143154354 38.0 36.0 41.0 32.0 41.0 20 36.93706993884891 38.0 35.0 41.0 32.0 41.0 21 36.81869431164555 38.0 35.0 41.0 32.0 41.0 22 36.7275805642955 38.0 35.0 40.0 32.0 41.0 23 36.60505779548137 38.0 35.0 40.0 31.0 41.0 24 36.62044031550648 38.0 35.0 40.0 32.0 41.0 25 36.59241503393116 38.0 35.0 40.0 32.0 41.0 26 36.36430250644475 38.0 35.0 40.0 31.0 41.0 27 36.339885988148765 38.0 35.0 40.0 31.0 41.0 28 36.29268634502797 38.0 35.0 40.0 31.0 41.0 29 36.20488873185502 38.0 35.0 40.0 31.0 41.0 30 36.001801174069406 38.0 35.0 40.0 30.0 41.0 31 35.718485868925846 38.0 35.0 40.0 29.0 41.0 32 35.27326574078095 38.0 34.0 40.0 25.0 41.0 33 34.69579995815354 38.0 34.0 40.0 22.0 41.0 34 34.122717690391504 38.0 33.0 40.0 18.0 41.0 35 33.6343730137738 38.0 33.0 40.0 15.0 41.0 36 33.376637341249946 38.0 33.0 40.0 15.0 41.0 37 33.24855017824221 38.0 33.0 40.0 12.0 41.0 38 33.110719403727494 38.0 32.0 40.0 10.0 41.0 39 32.91027044258548 37.0 32.0 40.0 10.0 41.0 40 32.82950086258966 37.0 31.0 40.0 10.0 41.0 41 32.72193820147094 37.0 31.0 40.0 10.0 41.0 42 32.66751560359564 37.0 31.0 40.0 10.0 41.0 43 32.57777617673416 37.0 31.0 40.0 10.0 41.0 44 32.458678599486 37.0 31.0 40.0 10.0 41.0 45 32.36953133944186 37.0 31.0 40.0 10.0 41.0 46 32.29491832045699 37.0 31.0 40.0 10.0 41.0 47 32.23522346401797 36.0 31.0 40.0 10.0 41.0 48 32.07372427528651 36.0 30.0 40.0 10.0 41.0 49 31.981898940810954 36.0 30.0 40.0 10.0 41.0 50 31.849432704188988 36.0 30.0 40.0 9.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 9.0 14 21.0 15 50.0 16 142.0 17 455.0 18 1089.0 19 2279.0 20 4190.0 21 6747.0 22 10208.0 23 15825.0 24 24620.0 25 40614.0 26 62895.0 27 74939.0 28 70585.0 29 61511.0 30 58584.0 31 61138.0 32 69326.0 33 84004.0 34 123908.0 35 180234.0 36 137611.0 37 174871.0 38 273160.0 39 487437.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.020001421200362 21.610831915422786 26.910280805504783 23.45888585787207 2 39.95453145787523 22.39643989309415 26.410294622730518 11.238734026300103 3 24.388439719391883 21.643253048672165 42.11441057688891 11.853896655047038 4 21.90020410016304 24.53317515899679 41.28374857386491 12.282872166975253 5 20.31605916930839 28.271326887926506 39.713371521513416 11.699242421251682 6 18.19156201763078 35.90736734476347 36.58436205868768 9.316708578918071 7 76.74511561070165 2.8352453741902117 18.96976791008539 1.4498711050227588 8 77.60454705160141 2.216825827947905 18.592113522326663 1.5865135981240155 9 72.3662393854098 5.366955907258781 20.094391390684034 2.1724133166473885 10 28.843113297303276 37.97822405223701 24.457032375733792 8.721630274725925 11 25.632483508154134 20.09473682132748 39.70340338008819 14.569376290430188 12 25.11981508604184 20.219091852968926 39.1079796452526 15.553113415736636 13 20.246183484862243 25.026302076136865 39.596862700201726 15.130651738799164 14 16.21925173800961 28.12752904578239 39.38131397868989 16.271905237518112 15 15.745913062015656 24.04878270241249 45.48482671225035 14.720477523321504 16 18.77810325020627 22.210104734571093 43.38988855420497 15.621903461017657 17 18.627791573071413 21.565728542835373 39.13704516653705 20.669434717556168 18 19.422282053002878 22.41558662018815 40.72637155704343 17.43575976976554 19 21.35565736438393 22.837061352430055 38.19352603757496 17.613755245611056 20 22.455903311002064 22.993788170086102 37.728329655319435 16.8219788635924 21 21.223110691769275 22.913352177397385 38.808145846739336 17.055391284094004 22 20.606911771091994 21.18412637629438 38.38449983616718 19.824462016446446 23 17.833843912722507 24.786967987461857 38.637404414406234 18.741783685409406 24 17.81548674138496 23.21002775288484 42.075771692057465 16.898713813672735 25 17.695375571934452 24.78440193125338 39.97599750500381 17.54422499180836 26 18.20414556249926 27.001523842609952 37.129254225110245 17.665076369780543 27 17.680176623622717 25.922201123537842 38.86859620934281 17.529026043496625 28 16.559747657980235 24.697698839747815 41.30417832906315 17.438375173208794 29 17.433933922078744 22.511566991832048 41.167486488727114 18.887012597362094 30 18.92762537158468 24.525921115484373 38.89391134078411 17.65254217214684 31 21.67601961256499 24.01192031803306 36.43607361817873 17.87598645122322 32 21.80328613105836 24.684523128061997 36.31393921210231 17.198251528777334 33 20.95051656685366 25.184706699775372 35.57496437129649 18.28981236207448 34 19.258844011416976 25.648077234344097 35.53588136135203 19.55719739288689 35 19.90484866190038 25.69920096957447 34.733445976621255 19.662504391903894 36 22.39111039173809 26.073055620255264 32.844039051427714 18.691794936578933 37 20.340979522871454 28.020100115669916 32.994005297919124 18.6449150635395 38 20.263504364269444 28.67646768545678 31.563280919990365 19.496747030283412 39 20.56215382914803 28.14489927242437 31.985446513519168 19.307500384908433 40 21.524967726908457 27.182085374663945 31.365497202998732 19.927449695428866 41 19.585769441823558 26.546098212840548 31.98386740200626 21.884264943329633 42 20.703336267848897 26.92069307204302 31.03141642354929 21.3445542365588 43 21.247932350862786 26.70524304500073 31.408330602786343 20.638494001350143 44 20.54478360250605 28.4842602059951 30.7216144836108 20.249341707888057 45 19.470296912442215 29.100952599020165 30.44132219006976 20.987428298467865 46 20.582682278815824 28.845037839459632 30.922605770863026 19.649674110861522 47 20.663513049382765 26.827229409372816 32.105755071908796 20.403502469335628 48 21.317462604665486 25.729697560667493 32.118289269542494 20.83455056512453 49 20.41371734693475 25.491202374983718 33.24232058332379 20.852759694757744 50 19.477156178076406 27.62665461278212 32.260656041878036 20.63553316726344 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 571.0 1 1531.5 2 2492.0 3 39993.0 4 77494.0 5 55791.0 6 34088.0 7 33238.0 8 32388.0 9 32699.0 10 33010.0 11 32616.5 12 32223.0 13 31300.5 14 30378.0 15 28659.0 16 26940.0 17 25049.5 18 23159.0 19 21532.5 20 19906.0 21 18715.5 22 17525.0 23 17418.5 24 17312.0 25 18435.0 26 19558.0 27 22132.0 28 24706.0 29 27626.0 30 30546.0 31 36227.5 32 41909.0 33 46758.5 34 51608.0 35 58224.5 36 64841.0 37 71784.5 38 78728.0 39 87721.5 40 96715.0 41 111967.0 42 127219.0 43 136902.0 44 146585.0 45 152957.5 46 159330.0 47 161079.0 48 162828.0 49 156574.5 50 150321.0 51 136360.0 52 122399.0 53 111647.5 54 100896.0 55 91123.0 56 81350.0 57 73288.5 58 65227.0 59 57572.5 60 49918.0 61 43745.5 62 37573.0 63 32095.0 64 26617.0 65 21295.0 66 15973.0 67 12933.5 68 9894.0 69 8098.5 70 6303.0 71 4982.0 72 3661.0 73 2730.5 74 1800.0 75 1373.5 76 947.0 77 852.0 78 757.0 79 591.5 80 426.0 81 300.5 82 175.0 83 140.5 84 106.0 85 68.0 86 30.0 87 17.0 88 4.0 89 7.0 90 10.0 91 6.0 92 2.0 93 2.5 94 3.0 95 4.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2026456.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.254427731117694 #Duplication Level Percentage of deduplicated Percentage of total 1 77.23776339133804 22.59546567245066 2 7.396712416432143 4.3277317766875 3 3.0718304254655684 2.695939235520929 4 1.891101996780954 2.212924267880031 5 1.26571127459073 1.8513829505487682 6 0.9819814269272866 1.7236382812406477 7 0.8094372687662715 1.6575736857397327 8 0.6328541282346009 1.4811028287022896 9 0.5318899950704831 1.400412367952459 >10 5.161472310420924 32.03657814867763 >50 0.7883666718993626 16.029617682650102 >100 0.2274379214561275 8.90861062139357 >500 0.002580579463180178 0.5447601969586394 >1k 6.881545235147142E-4 0.26936036346291925 >5k 0.0 0.0 >10k+ 1.7203863087867854E-4 2.26490192013421 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45002 2.220724259495395 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06469422479441941 0.0 2 0.0 0.0 0.0 0.20750512224297 0.0 3 0.0 0.0 0.0 0.31088757910361736 0.0 4 0.0 0.0 0.0 0.4440264185356109 0.0 5 0.0 0.0 0.0 0.7795876150284042 0.0 6 0.0 0.0 0.0 1.2295850489721958 0.0 7 0.0 0.0 0.0 1.5314420841113747 0.0 8 0.0 0.0 0.0 2.1251880129645055 0.0 9 0.0 0.0 0.0 2.4127343500179625 0.0 10 0.0 0.0 0.0 2.7981856008716695 0.0 11 0.0 0.0 0.0 3.1134650838705604 0.0 12 0.0 0.0 0.0 3.397063642141749 0.0 13 0.0 0.0 0.0 3.5273896891913763 0.0 14 0.0 0.0 0.0 3.5864583292210637 0.0 15 0.0 0.0 0.0 3.6636374044144064 0.0 16 0.0 0.0 0.0 3.80935978871488 0.0 17 0.0 0.0 0.0 4.000777712420107 0.0 18 0.0 0.0 0.0 4.246428247146743 0.0 19 0.0 0.0 0.0 4.373941501814004 0.0 20 0.0 0.0 0.0 4.5256349015226585 0.0 21 0.0 0.0 0.0 4.6843849558046164 0.0 22 4.934723477835196E-5 0.0 0.0 4.881181728100684 0.0 23 4.934723477835196E-5 0.0 0.0 5.089821836743556 0.0 24 4.934723477835196E-5 0.0 0.0 5.250052308068865 0.0 25 4.934723477835196E-5 0.0 0.0 5.390001065900271 0.0 26 4.934723477835196E-5 0.0 0.0 5.532811963348822 0.0 27 4.934723477835196E-5 0.0 0.0 5.6751787356843675 0.0 28 4.934723477835196E-5 0.0 0.0 5.837235054696475 0.0 29 4.934723477835196E-5 0.0 0.0 6.011233404524944 0.0 30 4.934723477835196E-5 0.0 0.0 6.228756015427919 0.0 31 4.934723477835196E-5 0.0 0.0 6.413857493081518 0.0 32 4.934723477835196E-5 0.0 0.0 6.589188218249002 0.0 33 4.934723477835196E-5 0.0 0.0 6.7665915272771775 0.0 34 4.934723477835196E-5 0.0 0.0 6.952285171748116 0.0 35 4.934723477835196E-5 0.0 0.0 7.157076196078276 0.0 36 4.934723477835196E-5 0.0 0.0 7.346865661035818 0.0 37 9.869446955670392E-5 0.0 0.0 7.550817782374747 0.0 38 9.869446955670392E-5 0.0 0.0 7.752993403261655 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAA 20 7.8579044E-4 44.000004 27 GGCGCGT 20 7.8579044E-4 44.000004 31 CGTTTTT 32900 0.0 43.558662 1 CGACGGT 190 0.0 42.842106 28 CGTTAGG 255 0.0 41.411766 2 CGTTTCG 60 3.6379788E-12 40.333332 42 TCGTTGA 90 0.0 39.11111 24 GCGATAT 225 0.0 39.11111 9 GTTTTTT 37390 0.0 38.845684 2 GACCGAT 820 0.0 38.634148 9 CACGACG 205 0.0 38.634148 26 GCCGATC 40 4.126614E-7 38.500004 9 TAACGGG 515 0.0 38.4466 3 TGGGCGA 865 0.0 38.150288 6 AGGGCGA 1485 0.0 37.925926 6 CGGTCTA 210 0.0 37.714287 31 TCGCAAG 70 0.0 37.714283 1 GGACCGA 905 0.0 37.679558 8 ACGGGAC 775 0.0 37.470966 5 CCGCAAT 65 1.0913936E-11 37.23077 33 >>END_MODULE