##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545875_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3024970 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.502647960145058 31.0 31.0 33.0 30.0 34.0 2 31.91319682509248 31.0 31.0 34.0 30.0 34.0 3 31.968209271496907 33.0 31.0 34.0 30.0 34.0 4 35.725152976723734 37.0 35.0 37.0 33.0 37.0 5 35.65268448943295 37.0 35.0 37.0 33.0 37.0 6 35.70491641239417 37.0 35.0 37.0 33.0 37.0 7 36.00688238230462 37.0 35.0 37.0 35.0 37.0 8 35.99564227083244 37.0 35.0 37.0 35.0 37.0 9 37.76261714992215 39.0 38.0 39.0 35.0 39.0 10 37.29177843086047 39.0 37.0 39.0 34.0 39.0 11 37.113683772070466 39.0 37.0 39.0 33.0 39.0 12 36.68463819475895 39.0 35.0 39.0 33.0 39.0 13 36.47328799955041 39.0 35.0 39.0 32.0 39.0 14 37.62354370456566 40.0 36.0 41.0 33.0 41.0 15 37.71034820180035 40.0 36.0 41.0 33.0 41.0 16 37.7971391451816 40.0 36.0 41.0 33.0 41.0 17 37.70167935549774 40.0 36.0 41.0 33.0 41.0 18 37.571710463244266 39.0 36.0 41.0 33.0 41.0 19 37.4676978614664 39.0 36.0 41.0 33.0 41.0 20 37.282245113174675 39.0 35.0 41.0 32.0 41.0 21 37.16622049144289 39.0 35.0 41.0 32.0 41.0 22 37.0721303021187 39.0 35.0 41.0 32.0 41.0 23 36.98451786298707 39.0 35.0 41.0 32.0 41.0 24 37.038703193750685 39.0 35.0 41.0 32.0 41.0 25 37.001400013884435 39.0 35.0 41.0 32.0 41.0 26 36.76802282336684 39.0 35.0 41.0 31.0 41.0 27 36.762779465581474 39.0 35.0 41.0 31.0 41.0 28 36.734383481489076 38.0 35.0 41.0 31.0 41.0 29 36.700804636079035 38.0 35.0 41.0 31.0 41.0 30 36.575721081531384 38.0 35.0 41.0 31.0 41.0 31 36.425730503112426 38.0 35.0 41.0 30.0 41.0 32 36.20977827879285 38.0 35.0 41.0 30.0 41.0 33 35.94020965497179 38.0 35.0 41.0 29.0 41.0 34 35.66206904531285 38.0 35.0 41.0 27.0 41.0 35 35.40622287163178 38.0 35.0 41.0 25.0 41.0 36 35.25864223446844 38.0 35.0 41.0 24.0 41.0 37 35.164491548676516 38.0 34.0 40.0 24.0 41.0 38 35.081483452728456 38.0 34.0 40.0 24.0 41.0 39 34.972806341881075 38.0 34.0 40.0 23.0 41.0 40 34.862825747032204 38.0 34.0 40.0 23.0 41.0 41 34.81522791961573 38.0 34.0 40.0 23.0 41.0 42 34.80407607348172 38.0 34.0 40.0 23.0 41.0 43 34.711958135122 38.0 34.0 40.0 23.0 41.0 44 34.60641031150722 38.0 34.0 40.0 23.0 41.0 45 34.525341077762754 38.0 34.0 40.0 23.0 41.0 46 34.46490080893364 38.0 34.0 40.0 23.0 41.0 47 34.396152027953995 38.0 34.0 40.0 23.0 41.0 48 34.27203079699964 37.0 33.0 40.0 22.0 41.0 49 34.19999702476388 37.0 33.0 40.0 22.0 41.0 50 34.06881456675603 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 4.0 12 4.0 13 9.0 14 43.0 15 83.0 16 191.0 17 490.0 18 1275.0 19 2426.0 20 4204.0 21 6733.0 22 10297.0 23 15025.0 24 22560.0 25 34997.0 26 52853.0 27 65992.0 28 69284.0 29 68531.0 30 72547.0 31 83014.0 32 99076.0 33 125675.0 34 201321.0 35 310346.0 36 207213.0 37 271079.0 38 440233.0 39 859463.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.719322836259533 22.985880851710927 29.04709798774864 16.2476983242809 2 33.39319067627117 24.98424777766391 29.615268911757802 12.007292634307117 3 27.69270439045676 24.537598719987304 35.06289318571754 12.706803703838384 4 24.879387233592396 27.044466556693123 34.748609077114814 13.327537132599662 5 23.031071382526108 31.79512524091148 32.39592458768186 12.777878788880551 6 20.344234818857707 40.900339507499254 28.476315467591412 10.27911020605163 7 85.86217383974056 3.133584795882273 9.58449174702559 1.419749617351577 8 86.84737369296225 2.5295457475611327 9.368026790348335 1.2550537691282888 9 80.79333018178693 6.628958303718714 10.549922809151827 2.0277887053425325 10 31.199251562825413 45.6995606567999 14.699120983018013 8.402066797356667 11 33.41233136196392 21.976548527753994 30.322218071584178 14.288902038697904 12 32.08107849003461 21.221003844666228 30.44116139994777 16.25675626535139 13 22.35552749283464 29.043792169839698 30.98972882375693 17.61095151356873 14 17.168699193711014 32.62452189608492 32.320122183029916 17.886656727174156 15 16.484560177456306 26.103167965302138 41.16553222015425 16.24673963708731 16 19.85890769164653 23.4236042010334 39.064387415412384 17.65310069190769 17 19.357745696651538 22.818507290981398 32.41876778943262 25.404979222934443 18 21.114027577132997 24.59809518772087 34.75409673484366 19.533780500302484 19 25.100215869909455 25.051355881215354 30.382879830213195 19.465548418662003 20 26.985358532481314 24.04205661543751 31.129102106797752 17.843482745283424 21 23.38039716096358 24.78771690297755 32.23787343345554 19.59401250260333 22 22.7453495406566 23.202378866567273 31.388906336261186 22.663365256514943 23 20.10294316968433 26.805224514623287 31.474361729207235 21.617470586485155 24 19.76174970330284 24.10850355540716 37.29713021947325 18.832616521816746 25 19.200289589648822 26.753686813422945 33.57312634505466 20.472897251873572 26 19.563235337871117 30.738089964528577 30.435012578637142 19.26366211896316 27 19.034668112411033 29.397217162484257 32.201740843710844 19.366373881393866 28 17.3962716985623 27.449495366896198 36.55798239321382 18.596250541327684 29 19.246604098553043 23.850021653107305 35.90042215294697 21.002952095392683 30 19.54505333937196 27.128831029729223 33.6333914055346 19.69272422536422 31 24.02420519872924 26.32826110672172 29.80928736483337 19.838246329715666 32 24.073164361960615 26.32568256875275 30.85283490414781 18.748318165138826 33 24.197859813485753 27.53904997404933 29.1667355378731 19.096354674591815 34 20.29137479049379 27.711250028925903 30.91802563331207 21.079349547268237 35 21.247714853370447 26.54872610306879 31.00946455667329 21.194094486887476 36 24.26784397861797 27.658555291457436 28.98587424007511 19.087726489849484 37 21.423121551618692 30.592204220207144 29.688360545724418 18.296313682449743 38 20.360466384790595 29.591202557380736 28.536580528071354 21.51175052975732 39 21.87707646687405 29.055858405207324 29.111263913361125 19.9558012145575 40 22.454305331953705 27.292700423475274 29.160520600204297 21.09247364436672 41 19.3192659761915 27.462553347636504 29.90006512461281 23.318115551559192 42 21.584412407395774 27.471644346886087 27.81158160246217 23.132361643255965 43 22.074995785082166 27.894425399260157 28.375851661338793 21.654727154318888 44 20.52466636032754 29.35166299169909 28.913146246078476 21.210524401894894 45 19.26594313332033 31.61287549959173 27.162186732430406 21.958994634657532 46 21.1404741204045 30.880174018254724 28.022922541380574 19.956429319960197 47 21.400046942614306 28.129336819869287 29.16316525453145 21.307450982984953 48 21.717438520051438 26.136722017077858 30.91346360459773 21.232375858272974 49 20.48896352691101 27.087111607718423 30.68132907103211 21.742595794338456 50 19.484887453429288 29.67679018304314 29.85510600105125 20.983216362476323 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 872.0 1 2569.0 2 4266.0 3 30123.5 4 55981.0 5 40971.5 6 25962.0 7 25151.5 8 24341.0 9 23856.0 10 23371.0 11 22656.0 12 21941.0 13 20823.0 14 19705.0 15 18425.0 16 17145.0 17 16244.5 18 15344.0 19 14954.0 20 14564.0 21 15459.0 22 16354.0 23 18779.5 24 21205.0 25 24568.0 26 27931.0 27 34710.0 28 41489.0 29 52673.0 30 63857.0 31 72139.5 32 80422.0 33 88559.5 34 96697.0 35 107832.0 36 118967.0 37 124527.0 38 130087.0 39 142648.5 40 155210.0 41 181206.5 42 207203.0 43 221353.5 44 235504.0 45 249315.5 46 263127.0 47 244744.5 48 226362.0 49 219797.5 50 213233.0 51 199107.0 52 184981.0 53 170476.5 54 155972.0 55 141173.0 56 126374.0 57 118605.5 58 110837.0 59 105623.5 60 100410.0 61 90066.5 62 79723.0 63 66581.5 64 53440.0 65 43708.5 66 33977.0 67 27909.0 68 21841.0 69 17969.5 70 14098.0 71 11752.5 72 9407.0 73 7554.0 74 5701.0 75 4680.0 76 3659.0 77 2721.5 78 1784.0 79 1331.0 80 878.0 81 598.5 82 319.0 83 235.0 84 151.0 85 143.5 86 136.0 87 112.0 88 88.0 89 62.5 90 37.0 91 23.0 92 9.0 93 6.5 94 4.0 95 3.0 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3024970.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.397404080649874 #Duplication Level Percentage of deduplicated Percentage of total 1 79.19677241859169 13.778182516495063 2 7.718898498979181 2.6857759248852515 3 2.6755884167362036 1.3964487851839789 4 1.3436990993567997 0.9350750477726217 5 0.7631913990060157 0.6638774579692072 6 0.5826070264384718 0.6081509915505575 7 0.4198133180380709 0.511256335264269 8 0.33488732244247965 0.4660936056014964 9 0.2658613602645427 0.41627677625581333 >10 3.7396089646369424 15.95224865673614 >50 1.4767799343530583 18.421096494852122 >100 1.4765058082780966 42.34787310724102 >500 0.0046291463027256004 0.4898213644822242 >1k 9.644054797345001E-4 0.3866692870403966 >5k 0.0 0.0 >10k+ 1.928810959469E-4 0.9411536486697912 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28047 0.9271827489198241 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4493 0.14853039864858164 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02733911410691676 0.0 2 0.0 0.0 0.0 0.09143892336122342 0.0 3 3.30581790893794E-5 0.0 0.0 0.12472850970422847 0.0 4 3.30581790893794E-5 0.0 0.0 0.18105964687253095 0.0 5 3.30581790893794E-5 0.0 0.0 0.3238379223595606 0.0 6 3.30581790893794E-5 0.0 0.0 0.45051686463006246 0.0 7 3.30581790893794E-5 0.0 0.0 0.5381871555750967 0.0 8 3.30581790893794E-5 0.0 0.0 0.7711812017970426 0.0 9 3.30581790893794E-5 0.0 0.0 0.8696945754833932 0.0 10 3.30581790893794E-5 0.0 0.0 1.0628865740817264 0.0 11 3.30581790893794E-5 0.0 0.0 1.2345576980928736 0.0 12 3.30581790893794E-5 0.0 0.0 1.3981626264062124 0.0 13 3.30581790893794E-5 0.0 0.0 1.458427686886151 0.0 14 3.30581790893794E-5 0.0 0.0 1.4808080741296608 0.0 15 3.30581790893794E-5 0.0 0.0 1.5200811908878435 0.0 16 3.30581790893794E-5 0.0 0.0 1.6032225112976326 0.0 17 3.30581790893794E-5 0.0 0.0 1.7189261381104606 0.0 18 3.30581790893794E-5 0.0 0.0 1.8634895552683166 0.0 19 3.30581790893794E-5 0.0 0.0 1.9405812289047495 0.0 20 3.30581790893794E-5 0.0 0.0 2.030367243311504 0.0 21 3.30581790893794E-5 0.0 0.0 2.1434923321553603 0.0 22 3.30581790893794E-5 0.0 0.0 2.2797912045408717 0.0 23 3.30581790893794E-5 0.0 0.0 2.4176438113435834 0.0 24 3.30581790893794E-5 0.0 0.0 2.5194299447597825 0.0 25 3.30581790893794E-5 0.0 0.0 2.603166312393181 0.0 26 3.30581790893794E-5 0.0 0.0 2.6891506362046567 0.0 27 3.30581790893794E-5 0.0 0.0 2.781184606789489 0.0 28 3.30581790893794E-5 0.0 0.0 2.883764136503833 0.0 29 3.30581790893794E-5 0.0 0.0 2.9915668585142994 0.0 30 3.30581790893794E-5 0.0 0.0 3.121816084126454 0.0 31 3.30581790893794E-5 0.0 0.0 3.2417511578627227 0.0 32 3.30581790893794E-5 0.0 0.0 3.3593060427045556 0.0 33 3.30581790893794E-5 0.0 0.0 3.4746790877264897 0.0 34 3.30581790893794E-5 0.0 0.0 3.599209248356182 0.0 35 3.30581790893794E-5 0.0 0.0 3.7462520289457415 0.0 36 3.30581790893794E-5 0.0 0.0 3.881592214137661 0.0 37 3.30581790893794E-5 0.0 0.0 4.020469624492144 0.0 38 3.30581790893794E-5 0.0 0.0 4.159809849353878 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 25 4.4445685E-5 44.0 32 CTCGTCG 30 2.529092E-6 44.0 21 TAGTCCG 35 1.4471334E-7 44.0 1 CGTTTTT 21105 0.0 42.99929 1 CGGTCTA 210 0.0 41.90476 31 CGGGCAC 135 0.0 39.11111 6 TACGACG 80 0.0 38.500004 1 TAAGGGA 6025 0.0 38.303734 4 CGACGGT 230 0.0 38.260868 28 GGCGATT 1595 0.0 38.068966 8 TAGGGAT 8435 0.0 37.844696 5 TCGTCGT 35 7.2941493E-6 37.714287 22 TATGGGA 4430 0.0 37.047405 4 TTAGGGA 6485 0.0 37.011566 4 ATAGGGA 7030 0.0 36.990044 4 TAGGGAC 3655 0.0 36.83721 5 GTTTTTT 25715 0.0 36.830643 2 TTACGAG 180 0.0 36.666668 1 TAGCGGA 60 1.9826984E-10 36.666664 3 GTACGAT 30 1.3015975E-4 36.666664 39 >>END_MODULE