##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545874_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2176903 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48232741651787 31.0 31.0 33.0 30.0 34.0 2 31.892885443219104 31.0 31.0 34.0 30.0 34.0 3 31.984207840220716 33.0 31.0 34.0 30.0 34.0 4 35.75379977886015 37.0 35.0 37.0 35.0 37.0 5 35.67697642017122 37.0 35.0 37.0 33.0 37.0 6 35.71407499553264 37.0 35.0 37.0 33.0 37.0 7 35.96261753509458 37.0 35.0 37.0 35.0 37.0 8 35.940828323540366 37.0 35.0 37.0 35.0 37.0 9 37.70792175857169 39.0 38.0 39.0 35.0 39.0 10 37.23976171653032 39.0 37.0 39.0 34.0 39.0 11 37.0061022470914 39.0 37.0 39.0 33.0 39.0 12 36.53562423314222 39.0 35.0 39.0 32.0 39.0 13 36.33154026614874 39.0 35.0 39.0 32.0 39.0 14 37.367809222551486 40.0 35.0 41.0 32.0 41.0 15 37.49263839500428 40.0 35.0 41.0 32.0 41.0 16 37.585884626003086 40.0 35.0 41.0 33.0 41.0 17 37.5196138734707 39.0 35.0 41.0 32.0 41.0 18 37.397347516173205 39.0 36.0 41.0 32.0 41.0 19 37.30474577875082 39.0 35.0 41.0 32.0 41.0 20 37.121336596072496 39.0 35.0 41.0 32.0 41.0 21 36.997930546285254 39.0 35.0 41.0 32.0 41.0 22 36.9058465168177 38.0 35.0 41.0 32.0 41.0 23 36.78835575126682 38.0 35.0 41.0 31.0 41.0 24 36.8599482843287 38.0 35.0 41.0 32.0 41.0 25 36.81254010858545 38.0 35.0 41.0 31.0 41.0 26 36.578347312673095 38.0 35.0 41.0 31.0 41.0 27 36.557738677377905 38.0 35.0 41.0 31.0 41.0 28 36.5232722817691 38.0 35.0 41.0 31.0 41.0 29 36.46168984102645 38.0 35.0 41.0 31.0 41.0 30 36.33614175734978 38.0 35.0 40.0 30.0 41.0 31 36.17278491508349 38.0 35.0 41.0 30.0 41.0 32 36.00632182508821 38.0 35.0 41.0 30.0 41.0 33 35.7611905537362 38.0 35.0 41.0 29.0 41.0 34 35.498598237955484 38.0 35.0 40.0 27.0 41.0 35 35.22785213672819 38.0 34.0 40.0 25.0 41.0 36 35.08127417712227 38.0 34.0 40.0 25.0 41.0 37 35.00319995884061 38.0 34.0 40.0 24.0 41.0 38 34.91119264386148 38.0 34.0 40.0 24.0 41.0 39 34.77161958984851 38.0 34.0 40.0 23.0 41.0 40 34.63909094709319 38.0 34.0 40.0 23.0 41.0 41 34.56252850953855 37.0 34.0 40.0 23.0 41.0 42 34.54590121838226 37.0 34.0 40.0 23.0 41.0 43 34.44409879539879 37.0 33.0 40.0 23.0 41.0 44 34.314464172266746 37.0 33.0 40.0 23.0 41.0 45 34.22558561405814 37.0 33.0 40.0 23.0 41.0 46 34.166412100125726 36.0 33.0 40.0 23.0 41.0 47 34.09621834321511 36.0 33.0 40.0 23.0 41.0 48 33.95244942011656 36.0 33.0 40.0 23.0 41.0 49 33.8699055493056 36.0 33.0 40.0 22.0 41.0 50 33.741551644698916 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 5.0 12 5.0 13 16.0 14 24.0 15 69.0 16 208.0 17 465.0 18 992.0 19 1825.0 20 3282.0 21 5335.0 22 7989.0 23 11786.0 24 16714.0 25 25153.0 26 36992.0 27 45887.0 28 49396.0 29 51009.0 30 54957.0 31 64200.0 32 77208.0 33 99077.0 34 163097.0 35 234437.0 36 159856.0 37 207093.0 38 315058.0 39 544765.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.3373145243495 21.946223602980933 29.064501266248428 15.65196060642114 2 32.97620518691003 24.691959173192373 29.76007658586533 12.571759054032263 3 28.02807474655508 24.74598087282713 34.09862543255257 13.127318948065211 4 25.80487049721554 26.835141483106966 33.247829600124575 14.112158419552914 5 23.518824678913116 31.278380341246258 31.40553345739337 13.797261522447258 6 21.64809364496259 40.15006640167247 27.953794909557296 10.248045043807648 7 85.66803389953526 3.714543091722507 8.927545232837659 1.6898777759045764 8 86.35910741084926 3.0695442102840595 8.775126866011025 1.7962215128556485 9 80.73823225012782 5.912895521757285 10.513789544136785 2.83508268397811 10 39.28466266066977 34.529099367312185 15.008707324120552 11.177530647897495 11 36.04138539934944 21.255931017597018 26.262217471334274 16.440466111719264 12 32.65138593681023 20.180641948676627 29.33676879493482 17.831203319578318 13 23.98682899513667 26.913280012935807 30.868486101585603 18.23140489034192 14 18.521036536768058 29.34862049434449 33.15370505713851 18.976637911748938 15 18.319649520442574 22.582126994174754 40.88239117682322 18.215832308559456 16 22.03217139211072 20.728300709769798 37.26550976318192 19.97401813493757 17 21.938138722763487 20.868913314006182 31.122011407949735 26.0709365552806 18 23.596595714186623 22.109620869648303 33.16261680010547 21.131166616059605 19 26.88305358575922 23.23406233534521 28.751901210113633 21.130982868781935 20 27.601781062362445 23.315692063449774 28.507701078091213 20.574825796096565 21 25.455475048727482 23.603302489821548 30.61992197171854 20.321300489732433 22 24.580240828369476 21.21812501521657 30.526578354662565 23.675055801751387 23 22.089270858646433 24.67275758267594 30.358771153331134 22.879200405346495 24 22.274350304078776 22.678272757215183 34.44806681786005 20.59931012084599 25 21.87281656555207 24.68075058925455 31.75286174900765 21.693571096185728 26 21.537064352430953 26.66636960856777 29.63600123661918 22.160564802382098 27 20.085277111566295 26.12946006321825 31.940054288133187 21.845208537082268 28 19.618053721272837 24.589703813169443 34.64637606728458 21.145866398273146 29 20.852973237668376 23.204708707737552 34.12196133681657 21.820356717777504 30 22.717456864178146 24.53664678674245 31.590704776464545 21.155191572614857 31 26.771610861852825 23.885124876946744 28.367180347493665 20.976083913706766 32 26.962202725615242 23.71240243593766 29.040889741067932 20.284505097379167 33 25.812541946058232 24.741846559079573 28.670455229286745 20.775156265575454 34 22.45359577344512 24.925593836748813 30.567508060763387 22.053302329042683 35 22.820401276492337 24.895826777766395 31.120311745631295 21.163460200109974 36 26.381377580902775 26.07213091258545 27.356019078479843 20.19047242803193 37 22.23291529296436 28.9110263525752 28.743816329896188 20.112242024564257 38 23.222578130490888 28.17309728545553 26.622821503760157 21.981503080293425 39 22.863352202647523 26.950213215747326 27.582166040471257 22.604268541133894 40 24.650248541161456 25.467832053150737 27.46291405726392 22.419005348423884 41 20.70652665736599 25.430117924409124 28.096061239292702 25.767294178932183 42 22.51845856246236 25.35804305474337 27.226293500445358 24.897204882348912 43 22.862249718981506 25.21127491670506 28.422809835808028 23.503665528505405 44 21.68681838373138 26.61083199389224 29.101296658601694 22.601052963774684 45 21.44045922119635 28.50260209113589 26.56797294137589 23.488965746291864 46 22.39465883413271 27.358683414006045 28.646384335912074 21.60027341594917 47 22.60183388970478 25.958758842263528 29.684832075659777 21.754575192371917 48 22.93542707231328 24.49769236387657 30.69874955383864 21.868131009971506 49 22.1151792247978 24.417532613993366 30.80605796399748 22.66123019721136 50 21.116099339290724 26.688235534610406 29.740507500793555 22.455157625305308 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 582.0 1 2240.5 2 3899.0 3 21029.0 4 38159.0 5 26958.0 6 15757.0 7 15032.0 8 14307.0 9 14212.0 10 14117.0 11 13957.5 12 13798.0 13 12784.5 14 11771.0 15 10636.5 16 9502.0 17 9023.0 18 8544.0 19 8111.5 20 7679.0 21 8046.0 22 8413.0 23 9284.5 24 10156.0 25 12949.5 26 15743.0 27 17413.5 28 19084.0 29 24544.0 30 30004.0 31 35374.0 32 40744.0 33 45903.0 34 51062.0 35 56047.5 36 61033.0 37 63366.5 38 65700.0 39 77243.5 40 88787.0 41 106916.5 42 125046.0 43 138539.5 44 152033.0 45 160207.0 46 168381.0 47 166672.0 48 164963.0 49 158076.5 50 151190.0 51 141920.5 52 132651.0 53 130342.0 54 128033.0 55 125024.0 56 122015.0 57 118464.5 58 114914.0 59 109477.0 60 104040.0 61 95537.5 62 87035.0 63 75654.0 64 64273.0 65 55606.5 66 46940.0 67 38211.0 68 29482.0 69 25864.0 70 22246.0 71 18182.5 72 14119.0 73 11401.5 74 8684.0 75 7401.0 76 6118.0 77 4501.5 78 2885.0 79 2144.0 80 1403.0 81 1113.5 82 824.0 83 610.5 84 397.0 85 319.0 86 241.0 87 162.0 88 83.0 89 61.5 90 40.0 91 28.0 92 16.0 93 11.0 94 6.0 95 3.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2176903.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.980111333341217 #Duplication Level Percentage of deduplicated Percentage of total 1 78.77677054792471 14.951918754806865 2 6.879866411934326 2.611612609140565 3 2.431743016047898 1.3846425953599222 4 1.348141949482742 1.0235153717732046 5 0.8760479069884669 0.8313743403990828 6 0.6458436376095728 0.7354910487455862 7 0.4854225296744133 0.6449361559852748 8 0.41938609138694555 0.6367995764943233 9 0.3492903006747106 0.5966611915016014 >10 4.952008685776397 23.033734291830427 >50 1.8311358290754605 24.904854225774173 >100 1.00091279257899 27.1385700546195 >500 0.0024502148896666863 0.3192592373368632 >1k 7.350644669000059E-4 0.21220391842215683 >5k 0.0 0.0 >10k+ 2.4502148896666864E-4 0.9744266278105308 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20953 0.9625141772508927 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2521 0.11580672175103807 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03390137272997465 0.0 2 0.0 0.0 0.0 0.11194802891998404 0.0 3 0.0 0.0 0.0 0.15912514246156123 0.0 4 0.0 0.0 0.0 0.2334049794593512 0.0 5 0.0 0.0 0.0 0.40451963178883027 0.0 6 0.0 0.0 0.0 0.5763692732289863 0.0 7 0.0 0.0 0.0 0.7023739688906672 0.0 8 0.0 0.0 0.0 1.0447410840078772 0.0 9 0.0 0.0 0.0 1.1986753658752825 0.0 10 0.0 0.0 0.0 1.47585813423933 0.0 11 0.0 0.0 0.0 1.6884077976832224 0.0 12 0.0 0.0 0.0 1.90155463977954 0.0 13 0.0 0.0 0.0 1.97702883408218 0.0 14 0.0 0.0 0.0 2.0092764813131314 0.0 15 0.0 0.0 0.0 2.0554889216469454 0.0 16 0.0 0.0 0.0 2.1526452947145556 0.0 17 0.0 0.0 0.0 2.2709326047141283 0.0 18 0.0 0.0 0.0 2.434467681839751 0.0 19 0.0 0.0 0.0 2.5144436844452875 0.0 20 0.0 0.0 0.0 2.6156884344410383 0.0 21 0.0 0.0 0.0 2.737972247729917 0.0 22 0.0 0.0 0.0 2.8803763879235778 0.0 23 0.0 0.0 0.0 3.014787521538626 0.0 24 0.0 0.0 0.0 3.1241171517518236 0.0 25 0.0 0.0 0.0 3.2141073809903333 0.0 26 4.593681941730982E-5 0.0 0.0 3.302719505646324 0.0 27 4.593681941730982E-5 0.0 0.0 3.4023564669624693 0.0 28 4.593681941730982E-5 0.0 0.0 3.5021771755562834 0.0 29 9.187363883461964E-5 0.0 0.0 3.622531642429635 0.0 30 9.187363883461964E-5 0.0 0.0 3.76452235124854 0.0 31 9.187363883461964E-5 0.0 0.0 3.8831312189840337 0.0 32 9.187363883461964E-5 0.0 0.0 3.992874280571987 0.0 33 9.187363883461964E-5 0.0 0.0 4.1141015470142674 0.0 34 9.187363883461964E-5 0.0 0.0 4.2438271250487505 0.0 35 9.187363883461964E-5 0.0 0.0 4.39307585133559 0.0 36 9.187363883461964E-5 0.0 0.0 4.517380884678831 0.0 37 9.187363883461964E-5 0.0 0.0 4.6486223777540845 0.0 38 9.187363883461964E-5 0.0 0.0 4.809906550728259 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 25 4.4441564E-5 44.0 1 CGTTTTT 11925 0.0 42.22893 1 GCGTAAG 125 0.0 40.48 1 CGACGGT 300 0.0 39.600002 28 CGGGATA 430 0.0 39.39535 6 GGCGATA 785 0.0 38.955414 8 CGCCTAT 40 4.126814E-7 38.5 19 TAGGGAC 2330 0.0 38.429184 5 CGGTCTA 305 0.0 38.229504 31 GGGCGAT 3685 0.0 37.074627 7 TAGGGAT 3260 0.0 36.846626 5 ACTACCG 30 1.3014775E-4 36.666668 1 TCACGAC 325 0.0 36.553844 25 AACGGGA 705 0.0 36.51064 4 CGAGGGA 1795 0.0 36.401115 4 TATGGGA 2655 0.0 36.376648 4 ATAGGGA 3550 0.0 36.31549 4 TAAGGGA 3145 0.0 36.305244 4 TCGATAG 85 0.0 36.23529 1 ACGGGAT 870 0.0 36.16092 5 >>END_MODULE