##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545868_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2089783 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.472188739213593 31.0 31.0 33.0 30.0 34.0 2 31.882077708546774 31.0 31.0 34.0 30.0 34.0 3 31.93990715782452 31.0 31.0 34.0 30.0 34.0 4 35.700810084109214 37.0 35.0 37.0 33.0 37.0 5 35.630044363457834 37.0 35.0 37.0 33.0 37.0 6 35.68176887265329 37.0 35.0 37.0 33.0 37.0 7 35.981851704220006 37.0 35.0 37.0 35.0 37.0 8 35.96610461468966 37.0 35.0 37.0 35.0 37.0 9 37.72554758077752 39.0 38.0 39.0 35.0 39.0 10 37.230751231108684 39.0 37.0 39.0 34.0 39.0 11 36.97947155278802 39.0 37.0 39.0 33.0 39.0 12 36.46528802272772 39.0 35.0 39.0 32.0 39.0 13 36.23279833360689 38.0 35.0 39.0 32.0 39.0 14 37.32255262867006 39.0 35.0 41.0 32.0 41.0 15 37.438105774618705 39.0 35.0 41.0 32.0 41.0 16 37.55765167962415 39.0 35.0 41.0 33.0 41.0 17 37.460918669546075 39.0 35.0 41.0 32.0 41.0 18 37.349799955306366 39.0 35.0 41.0 32.0 41.0 19 37.25202903842169 39.0 35.0 41.0 32.0 41.0 20 37.05516840743752 38.0 35.0 41.0 32.0 41.0 21 36.92576454110307 38.0 35.0 41.0 32.0 41.0 22 36.82763712787404 38.0 35.0 41.0 32.0 41.0 23 36.747280459262996 38.0 35.0 41.0 31.0 41.0 24 36.80336522978702 38.0 35.0 41.0 32.0 41.0 25 36.75751405767967 38.0 35.0 41.0 32.0 41.0 26 36.52641255096821 38.0 35.0 41.0 31.0 41.0 27 36.54460199934634 38.0 35.0 41.0 31.0 41.0 28 36.5184978536049 38.0 35.0 41.0 31.0 41.0 29 36.4890790096388 38.0 35.0 41.0 31.0 41.0 30 36.36895170455497 38.0 35.0 40.0 31.0 41.0 31 36.21596883504172 38.0 35.0 40.0 30.0 41.0 32 36.011847641597235 38.0 35.0 41.0 30.0 41.0 33 35.734087701928864 38.0 35.0 41.0 29.0 41.0 34 35.464514736697545 38.0 35.0 40.0 27.0 41.0 35 35.22569376820464 38.0 34.0 40.0 25.0 41.0 36 35.04993341413917 38.0 34.0 40.0 24.0 41.0 37 34.98466060830239 38.0 34.0 40.0 24.0 41.0 38 34.91137070212553 38.0 34.0 40.0 24.0 41.0 39 34.81075499226475 38.0 34.0 40.0 23.0 41.0 40 34.68277424019623 38.0 34.0 40.0 23.0 41.0 41 34.63821219715157 38.0 34.0 40.0 23.0 41.0 42 34.610015489646536 38.0 34.0 40.0 23.0 41.0 43 34.51507022499465 37.0 34.0 40.0 23.0 41.0 44 34.40746144456147 37.0 34.0 40.0 23.0 41.0 45 34.305974352360984 37.0 34.0 40.0 23.0 41.0 46 34.240976216190866 37.0 33.0 40.0 23.0 41.0 47 34.195636580448785 37.0 33.0 40.0 23.0 41.0 48 34.103746656949546 37.0 33.0 40.0 23.0 41.0 49 34.036464551582625 36.0 33.0 40.0 22.0 41.0 50 33.88975123254424 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 2.0 12 5.0 13 10.0 14 18.0 15 36.0 16 134.0 17 389.0 18 825.0 19 1644.0 20 2936.0 21 4717.0 22 7305.0 23 10823.0 24 16087.0 25 24766.0 26 36591.0 27 46075.0 28 48242.0 29 48760.0 30 52642.0 31 60439.0 32 73166.0 33 93299.0 34 157677.0 35 246439.0 36 139766.0 37 180984.0 38 291945.0 39 544059.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.202617688056606 22.465825399096463 30.185717847259742 16.145839065587193 2 33.25594092783796 24.712183035272083 30.349036239647848 11.682839797242107 3 27.932708802780006 24.3589406172794 34.960711231740326 12.747639348200268 4 25.021928114067343 26.930403778765545 34.30102551317529 13.746642593991817 5 22.926782350129177 31.957050086061567 31.796459249596726 13.319708314212528 6 21.084820768472134 40.31542987956166 28.55846755380822 10.041281798157991 7 85.16563681492289 3.9620860156293745 9.468303646837974 1.4039735226097638 8 86.44648750611906 2.9572926949831633 9.192054868854804 1.4041649300429757 9 81.03736129540722 6.1303494190545145 10.506736823871186 2.3255524616670726 10 37.93475207712954 37.80995443067533 15.015721728045447 9.239571764149675 11 37.02470543592325 21.155593666902256 27.320827090659648 14.498873806514839 12 34.17531868141334 21.282209683971974 29.485023086129036 15.057448548485656 13 22.232978256594105 31.478292243740142 29.97923707868233 16.309492420983425 14 16.30834397638415 34.06018711033634 32.72253626333452 16.908932649944994 15 16.49850726128024 23.781703650570417 43.84134620675927 15.878442881390079 16 19.182183030486897 21.365089102552755 40.85902698988364 18.59370087707671 17 18.699884150651048 20.832641475215368 32.470165562644546 27.99730881148904 18 21.521612531061837 23.426068639662585 35.07211035786969 19.980208471405884 19 25.89479386137221 24.219117487318062 29.956842408996533 19.929246242313198 20 27.70684803158988 23.614461405801464 29.73433126788762 18.944359294721032 21 23.067897480264698 25.1523722798013 31.307796072606582 20.471934167327422 22 22.07468430932781 22.905966791767373 30.990298992766235 24.02904990613858 23 19.966140025064803 26.590081362514674 30.36631076049523 23.077467851925295 24 19.45833610475346 23.66202615295464 37.6509905573928 19.228647184899103 25 18.821427870740646 25.786983624615573 34.626418149635626 20.765170355008152 26 18.828174982761368 30.33822171967137 30.57269582535603 20.26090747221123 27 18.449475376151494 29.178101266973655 32.254975755855995 20.117447601018863 28 16.89318938856331 26.929446741599488 37.70893915779772 18.46842471203948 29 18.71653659734049 23.63503770487175 35.949761291004855 21.698664406782907 30 19.65381094592118 27.093004393279113 33.138464615704116 20.11472004509559 31 25.488244473229997 26.53868846669726 29.051963768486967 18.921103291585776 32 25.894937416947116 25.37521838391833 30.08350627792455 18.64633792121 33 24.809418011343762 26.67913367081654 29.317398026493656 19.19405029134604 34 20.795939099896977 26.928298297000214 30.761902073086056 21.513860530016753 35 21.745798487211353 25.83689311282559 31.351819782245332 21.065488617717726 36 25.767651473861164 26.647025073895232 28.50090176826972 19.084421683973886 37 21.61765121067594 30.475652256717563 28.81112536564801 19.095571166958482 38 20.40886541808408 29.90851203211051 27.885144055626824 21.79747849417858 39 21.95036518145664 29.269928983057092 28.200679209276753 20.579026626209515 40 23.470188053017946 26.851687471857126 28.36639019458001 21.31173428054492 41 19.096719611557756 26.2450216122918 29.403244260289224 25.25501451586122 42 22.02606682129197 26.240427833894714 27.199139814995142 24.534365529818167 43 22.46448554706398 26.47126519834834 28.185701577627913 22.87854767695976 44 20.83728310547076 28.651252307057717 29.40061240808256 21.11085217938896 45 19.333107791574534 31.940062676364008 26.172191083954647 22.55463844810681 46 20.905089188686098 30.737832588359655 28.19072602274973 20.166352200204518 47 21.718522927978647 27.152627808724638 29.47291656597838 21.655932697318335 48 21.8585374653732 25.384740903720626 31.15763694125179 21.59908468965438 49 20.96370771510726 25.78057147560297 31.69410412468663 21.561616684603138 50 19.89426653389371 29.610538510457786 29.305817876784335 21.18937707886417 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 518.0 1 1676.0 2 2834.0 3 20018.0 4 37202.0 5 26968.5 6 16735.0 7 16466.0 8 16197.0 9 16151.5 10 16106.0 11 15629.5 12 15153.0 13 14203.5 14 13254.0 15 12073.5 16 10893.0 17 10114.0 18 9335.0 19 9190.5 20 9046.0 21 9045.0 22 9044.0 23 11087.5 24 13131.0 25 14183.0 26 15235.0 27 19553.5 28 23872.0 29 29713.0 30 35554.0 31 41679.5 32 47805.0 33 53045.0 34 58285.0 35 66078.5 36 73872.0 37 76654.0 38 79436.0 39 92233.0 40 105030.0 41 124862.0 42 144694.0 43 160912.5 44 177131.0 45 176540.0 46 175949.0 47 169420.0 48 162891.0 49 154189.5 50 145488.0 51 142252.5 52 139017.0 53 128208.5 54 117400.0 55 107881.5 56 98363.0 57 93174.0 58 87985.0 59 81912.5 60 75840.0 61 66126.0 62 56412.0 63 47729.5 64 39047.0 65 30980.5 66 22914.0 67 18915.5 68 14917.0 69 12178.5 70 9440.0 71 7811.5 72 6183.0 73 4522.0 74 2861.0 75 2555.5 76 2250.0 77 1803.0 78 1356.0 79 943.0 80 530.0 81 400.0 82 270.0 83 198.5 84 127.0 85 100.0 86 73.0 87 60.5 88 48.0 89 37.5 90 27.0 91 20.0 92 13.0 93 11.0 94 9.0 95 10.0 96 11.0 97 5.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2089783.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.142707084212343 #Duplication Level Percentage of deduplicated Percentage of total 1 80.29824506128092 14.568275395231204 2 7.213456914459979 2.617432717272671 3 2.3314373228219916 1.2689575329947882 4 1.1634879973037981 0.8443528772431861 5 0.7242994513228742 0.6570376393303312 6 0.5327802600535481 0.57996457190412 7 0.38219770459450236 0.4853870701901462 8 0.33075248670290286 0.48005963869004836 9 0.28916964622153307 0.4721688170138326 >10 3.836629762211144 17.045859079632304 >50 1.5079451689652241 19.69414886555148 >100 1.3855913087679554 39.684856515550635 >500 0.0029384045487390463 0.31807050297082934 >1k 8.013830587470126E-4 0.33314286719815345 >5k 0.0 0.0 >10k+ 2.6712768624900416E-4 0.9502859092262719 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19608 0.9382792376050528 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4342 0.20777276875158807 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.035218967711001574 0.0 2 0.0 0.0 0.0 0.13159261033322597 0.0 3 0.0 0.0 0.0 0.18308120986724458 0.0 4 0.0 0.0 0.0 0.25825647926124384 0.0 5 0.0 0.0 0.0 0.44085917054545853 0.0 6 0.0 0.0 0.0 0.6016892663018122 0.0 7 0.0 0.0 0.0 0.7159595039293554 0.0 8 0.0 0.0 0.0 1.0100570250595398 0.0 9 0.0 0.0 0.0 1.1435158578665823 0.0 10 0.0 0.0 0.0 1.3945467065240744 0.0 11 0.0 0.0 0.0 1.605334142348751 0.0 12 0.0 0.0 0.0 1.8145424668494288 0.0 13 0.0 0.0 0.0 1.89134469942573 0.0 14 0.0 0.0 0.0 1.918333147508617 0.0 15 4.785185830299127E-5 0.0 0.0 1.9691039691680907 0.0 16 4.785185830299127E-5 0.0 0.0 2.076244279908488 0.0 17 4.785185830299127E-5 0.0 0.0 2.2174072619023124 0.0 18 4.785185830299127E-5 0.0 0.0 2.4139348439526973 0.0 19 4.785185830299127E-5 0.0 0.0 2.503274263404382 0.0 20 4.785185830299127E-5 0.0 0.0 2.6116108706023544 0.0 21 4.785185830299127E-5 0.0 0.0 2.734255183432921 0.0 22 4.785185830299127E-5 0.0 0.0 2.8833137220467386 0.0 23 4.785185830299127E-5 0.0 0.0 3.036152557466493 0.0 24 4.785185830299127E-5 0.0 0.0 3.149513609786279 0.0 25 4.785185830299127E-5 0.0 0.0 3.2461265117000186 0.0 26 4.785185830299127E-5 0.0 0.0 3.343265784055091 0.0 27 4.785185830299127E-5 0.0 0.0 3.4394480192441033 0.0 28 4.785185830299127E-5 0.0 0.0 3.5431429961866856 0.0 29 9.570371660598254E-5 0.0 0.0 3.656456196648169 0.0 30 9.570371660598254E-5 0.0 0.0 3.803696364646473 0.0 31 9.570371660598254E-5 0.0 0.0 3.934858308254972 0.0 32 9.570371660598254E-5 0.0 0.0 4.056019213478145 0.0 33 9.570371660598254E-5 0.0 0.0 4.178807081883622 0.0 34 1.435555749089738E-4 0.0 0.0 4.313940729731269 0.0 35 1.435555749089738E-4 0.0 0.0 4.466205342851387 0.0 36 1.435555749089738E-4 0.0 0.0 4.606363435820849 0.0 37 1.435555749089738E-4 0.0 0.0 4.743267602425706 0.0 38 1.435555749089738E-4 0.0 0.0 4.887971621933952 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGT 25 4.4440945E-5 44.0 37 CGCGATT 20 7.857963E-4 44.0 28 TCTAGCG 40 8.3182385E-9 44.0 1 AATGCGC 30 2.5287154E-6 44.0 27 TACGATG 45 4.802132E-10 44.0 1 TTACGCC 20 7.857963E-4 44.0 32 TACGTTG 35 1.4468424E-7 44.0 1 CGTTTTT 13710 0.0 43.08534 1 GTTAGCG 115 0.0 42.08696 1 CTAACGG 200 0.0 41.800003 2 ACTACGG 75 0.0 41.066666 2 AATACGG 235 0.0 39.319145 2 CGCACGG 135 0.0 39.11111 2 TTAGGGA 3540 0.0 38.903954 4 TAATGCG 170 0.0 38.82353 1 ATACGTC 40 4.126705E-7 38.5 13 ACGGGAT 970 0.0 38.329895 5 GCGATAA 230 0.0 38.26087 9 CGGGATA 490 0.0 38.163265 6 CTACGGG 330 0.0 38.0 3 >>END_MODULE