##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545865_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1061971 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.452763776035315 31.0 31.0 33.0 30.0 34.0 2 31.840205617667525 31.0 31.0 34.0 30.0 34.0 3 31.671643575954523 31.0 31.0 34.0 30.0 34.0 4 35.56487889028985 37.0 35.0 37.0 33.0 37.0 5 35.557511457469175 37.0 35.0 37.0 33.0 37.0 6 35.62481084700053 37.0 35.0 37.0 33.0 37.0 7 35.98236675012783 37.0 35.0 37.0 35.0 37.0 8 35.98626892824757 37.0 35.0 37.0 35.0 37.0 9 37.77425654749518 39.0 38.0 39.0 35.0 39.0 10 37.23684356729139 39.0 37.0 39.0 33.0 39.0 11 36.99552341824777 39.0 37.0 39.0 33.0 39.0 12 36.81478684446186 39.0 35.0 39.0 33.0 39.0 13 36.71709302796404 39.0 35.0 39.0 33.0 39.0 14 37.93463004168664 40.0 37.0 41.0 33.0 41.0 15 37.98557964388858 40.0 37.0 41.0 33.0 41.0 16 38.049635065364306 40.0 37.0 41.0 33.0 41.0 17 37.94725091363135 40.0 36.0 41.0 33.0 41.0 18 37.63998357770598 39.0 36.0 41.0 33.0 41.0 19 37.332401732250695 38.0 36.0 41.0 33.0 41.0 20 36.941755471665424 38.0 35.0 41.0 32.0 41.0 21 36.83591548168453 38.0 35.0 41.0 32.0 41.0 22 36.7617053573026 38.0 35.0 40.0 32.0 41.0 23 36.640746310398306 38.0 35.0 40.0 32.0 41.0 24 36.63659082969309 38.0 35.0 40.0 32.0 41.0 25 36.61116452332502 38.0 35.0 40.0 32.0 41.0 26 36.36536685088387 38.0 35.0 40.0 31.0 41.0 27 36.36099479175985 38.0 35.0 40.0 31.0 41.0 28 36.32519532077618 38.0 35.0 40.0 31.0 41.0 29 36.219167943380754 38.0 35.0 40.0 31.0 41.0 30 36.00000659151709 38.0 35.0 40.0 30.0 41.0 31 35.69936749685255 38.0 35.0 40.0 29.0 41.0 32 35.20379652551718 38.0 34.0 40.0 25.0 41.0 33 34.53974920219102 38.0 34.0 40.0 21.0 41.0 34 33.89354323234815 38.0 33.0 40.0 16.0 41.0 35 33.35131656137503 38.0 33.0 40.0 14.0 41.0 36 33.05877279134741 38.0 32.0 40.0 10.0 41.0 37 32.93292378040455 38.0 32.0 40.0 10.0 41.0 38 32.810633247047235 38.0 31.0 40.0 10.0 41.0 39 32.60692617783348 37.0 31.0 40.0 10.0 41.0 40 32.52261031610091 37.0 31.0 40.0 10.0 41.0 41 32.41454427663279 37.0 31.0 40.0 9.0 41.0 42 32.35062162714424 37.0 31.0 40.0 9.0 41.0 43 32.26103443502694 37.0 30.0 40.0 8.0 41.0 44 32.1255844086138 37.0 30.0 40.0 8.0 41.0 45 32.041244064103445 37.0 30.0 40.0 8.0 41.0 46 31.945881761366365 37.0 30.0 40.0 8.0 41.0 47 31.88642910211296 37.0 30.0 40.0 8.0 41.0 48 31.751125030721177 36.0 29.0 40.0 8.0 41.0 49 31.661269469693618 36.0 29.0 40.0 8.0 41.0 50 31.564294128559066 36.0 29.0 40.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 2.0 14 8.0 15 29.0 16 113.0 17 257.0 18 619.0 19 1358.0 20 2363.0 21 4063.0 22 6118.0 23 9144.0 24 14438.0 25 23966.0 26 37444.0 27 42927.0 28 38015.0 29 32033.0 30 29622.0 31 30697.0 32 34788.0 33 41280.0 34 60282.0 35 88952.0 36 69192.0 37 87677.0 38 139820.0 39 266761.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.765420148007806 21.55228344276821 26.137813556114054 25.544482853109923 2 41.20931739190618 22.221510756885074 25.416324927893513 11.152846923315233 3 23.178034051777306 21.398795259004245 43.904682896237276 11.518487792981166 4 20.754333216255436 24.029093073163015 43.2473203128899 11.96925339769165 5 19.345631848703967 28.026565697180057 41.247642355582215 11.380160098533764 6 16.93916312215682 35.89015142598056 38.309426528596354 8.861258923266266 7 75.61882574947903 2.695742162450764 20.54265135300305 1.1427807350671535 8 76.45189934565069 2.21522056628665 20.07229952606992 1.2605805619927475 9 71.32162742673765 5.490922068493396 21.404256801739407 1.7831937030295553 10 26.752425442879325 39.934047163246454 26.366915857401 6.946611536473219 11 22.961078974849595 20.71666740428882 42.76284380646929 13.559409814392295 12 24.95925029967862 19.588199677768976 41.51704707567344 13.935502946878964 13 19.05522843844135 26.2302831244921 39.917568370511056 14.796920066555488 14 15.165668365708667 27.642374415120564 39.97566788546957 17.216289333701205 15 14.044168814402653 24.17740220778157 45.977715022349955 15.800713955465827 16 16.412500906333598 22.463607763300505 43.94931688341772 17.174574446948174 17 16.713544908476784 22.391760226974185 40.84103991540259 20.053654949146445 18 17.39972183797863 22.661824098774826 43.331220909045534 16.60723315420101 19 19.0538159704926 25.0974838295961 38.198689041414504 17.650011158496795 20 21.507837784647606 22.36219256458039 40.1898921910297 15.94007745974231 21 18.227616385004865 24.221753701372258 39.82010808204744 17.730521831575437 22 19.286779017506127 21.8237597825176 38.842680261513735 20.04678093846254 23 15.899963369997863 24.888532737711294 40.311176105562204 18.900327786728642 24 15.497974991784144 22.272265438510093 46.62198873603893 15.607770833666832 25 15.55146044477674 27.53822844503287 40.13292265043019 16.7773884597602 26 17.18907578455532 26.760335263392314 38.23268243671437 17.817906515337988 27 14.946170846473208 26.86306876553126 39.41501227434647 18.775748113649055 28 14.179577408422642 24.788341677880094 42.86152823382183 18.170552679875442 29 15.451457714005373 20.60310498120947 43.27142643254853 20.67401087223662 30 16.183681098636406 26.025004449274036 41.14048312053719 16.650831331552368 31 19.21756808801747 26.168511192866852 37.76440222943941 16.84951848967627 32 19.90892406666472 24.493324205651568 36.18855882128608 19.40919290639763 33 19.51296221836566 27.121456235622254 35.68713269948049 17.67844884653159 34 16.833510519590458 25.34523070780652 36.52133627001114 21.29992250259188 35 17.945781946964654 26.60147970142311 36.171232547781436 19.2815058038308 36 19.20532669912832 29.30701497498519 33.39714549644011 18.09051282944638 37 17.02466451532104 30.853949872454145 34.57071803278997 17.550667579434844 38 17.45188898755239 28.7992798296752 35.84947234905661 17.899358833715798 39 17.74991972473825 31.06920998784336 33.5547769195204 17.626093367897994 40 20.417130034624297 28.787415098905715 32.89402441309603 17.901430453373962 41 18.609171060226693 26.726247703562528 33.64291491952228 21.0216663166885 42 18.357469271759776 28.238435889492276 30.906587844677492 22.49750699407046 43 19.06313825895434 27.769873188627564 32.07884207760852 21.088146474809577 44 19.060595816646593 28.255008846757583 31.948235874614276 20.736159461981543 45 17.53814369695594 31.569788628879696 30.15374242799474 20.738325246169623 46 18.586571573046722 31.26789714596726 30.77155590877717 19.373975372208847 47 18.181852423465426 28.82404510104325 32.69731471010037 20.296787765390956 48 18.84655984014629 26.422755423641515 33.44460441951805 21.286080316694147 49 18.0621693059415 27.456116974945644 33.62869607550489 20.85301764360797 50 17.61535861148751 28.837793122411064 34.084169906711196 19.462678359390228 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 256.0 1 755.5 2 1255.0 3 22458.0 4 43661.0 5 31624.5 6 19588.0 7 19020.0 8 18452.0 9 18791.5 10 19131.0 11 18881.0 12 18631.0 13 18314.5 14 17998.0 15 16988.0 16 15978.0 17 15242.5 18 14507.0 19 13195.5 20 11884.0 21 11326.5 22 10769.0 23 10471.0 24 10173.0 25 11031.5 26 11890.0 27 13396.5 28 14903.0 29 17623.0 30 20343.0 31 23758.0 32 27173.0 33 30976.0 34 34779.0 35 40041.5 36 45304.0 37 47935.0 38 50566.0 39 55396.0 40 60226.0 41 64456.0 42 68686.0 43 76454.0 44 84222.0 45 82924.5 46 81627.0 47 79118.5 48 76610.0 49 72288.0 50 67966.0 51 62256.0 52 56546.0 53 51542.5 54 46539.0 55 39938.5 56 33338.0 57 30216.5 58 27095.0 59 22867.5 60 18640.0 61 15879.5 62 13119.0 63 10804.0 64 8489.0 65 6757.5 66 5026.0 67 3972.0 68 2918.0 69 2157.5 70 1397.0 71 1245.0 72 1093.0 73 784.0 74 475.0 75 401.5 76 328.0 77 236.5 78 145.0 79 138.0 80 131.0 81 97.5 82 64.0 83 47.0 84 30.0 85 22.5 86 15.0 87 9.0 88 3.0 89 2.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1061971.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.24226865329947 #Duplication Level Percentage of deduplicated Percentage of total 1 76.19758503880736 26.853757626702812 2 7.608200400709805 5.362604849799112 3 3.575269399807042 3.7800181408776155 4 2.1756533911112075 3.066998452240128 5 1.5397392496078193 2.713195214535425 6 1.1705159512119179 2.475098256934967 7 0.9353743566800333 2.307530005866743 8 0.7303794707508914 2.0592183621646076 9 0.6087004323197158 1.930678574867186 >10 5.041934864910529 35.8113071635772 >50 0.3810278550866144 8.73045532055653 >100 0.033460826029092915 1.8324747828796057 >500 0.0016190722259716783 0.34901564428236226 >1k 2.698453709952797E-4 0.18734627227145875 >5k 0.0 0.0 >10k+ 2.698453709952797E-4 2.540301332444267 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26712 2.515322923130669 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 1970 0.18550412393558768 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01902123504314148 0.0 2 0.0 0.0 0.0 0.06516185470224704 0.0 3 0.0 0.0 0.0 0.11139663889126916 0.0 4 0.0 0.0 0.0 0.181737542738926 0.0 5 0.0 0.0 0.0 0.36686500855484755 0.0 6 0.0 0.0 0.0 0.7050098354851497 0.0 7 0.0 0.0 0.0 0.9687646837813838 0.0 8 0.0 0.0 0.0 1.518497209434156 0.0 9 0.0 0.0 0.0 1.8288635000390783 0.0 10 0.0 0.0 0.0 2.1845229295338573 0.0 11 0.0 0.0 0.0 2.385940859025341 0.0 12 0.0 0.0 0.0 2.599694341935891 0.0 13 0.0 0.0 0.0 2.705158615442418 0.0 14 0.0 0.0 0.0 2.7627873077513416 0.0 15 0.0 0.0 0.0 2.820604329120098 0.0 16 0.0 0.0 0.0 2.912038087669061 0.0 17 0.0 0.0 0.0 3.019008993654252 0.0 18 0.0 0.0 0.0 3.1752279487857953 0.0 19 0.0 0.0 0.0 3.268074175283506 0.0 20 0.0 0.0 0.0 3.3787174979354426 0.0 21 0.0 0.0 0.0 3.49152660477546 0.0 22 0.0 0.0 0.0 3.6309842735818587 0.0 23 0.0 0.0 0.0 3.780235053499578 0.0 24 0.0 0.0 0.0 3.8985057030747545 0.0 25 0.0 0.0 0.0 4.002180850512867 0.0 26 0.0 0.0 0.0 4.104820188121898 0.0 27 0.0 0.0 0.0 4.209154487269426 0.0 28 0.0 0.0 0.0 4.33213336334043 0.0 29 0.0 0.0 0.0 4.467541957360417 0.0 30 0.0 0.0 0.0 4.6550235364242525 0.0 31 0.0 0.0 0.0 4.801166886854726 0.0 32 0.0 0.0 0.0 4.947875224464698 0.0 33 0.0 0.0 0.0 5.089122019339511 0.0 34 0.0 0.0 0.0 5.250896681736131 0.0 35 0.0 0.0 0.0 5.446193916783038 0.0 36 0.0 0.0 0.0 5.612582641145568 0.0 37 0.0 0.0 0.0 5.7813254787560115 0.0 38 9.416452991654198E-5 0.0 0.0 5.95807230140936 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGC 40 8.310963E-9 44.000004 4 CCTCCGC 20 7.856209E-4 44.000004 44 CTAGTCG 20 7.856209E-4 44.000004 19 CTACGCG 20 7.856209E-4 44.000004 1 GTAACGT 20 7.856209E-4 44.000004 31 ACACGAC 30 2.527535E-6 44.0 26 GCGCGAC 85 0.0 44.0 9 GAGTACG 30 2.527535E-6 44.0 1 TAGCGGA 25 4.4426106E-5 44.0 3 GCACGCG 25 4.4426106E-5 44.0 1 TAACGCG 25 4.4426106E-5 44.0 1 TCGACGG 25 4.4426106E-5 44.0 2 CGTTTTT 18915 0.0 43.6627 1 CGCGACC 90 0.0 41.555557 10 CGACGGT 140 0.0 40.857143 28 TATTGCG 65 0.0 40.615387 1 TACGGGA 585 0.0 40.23932 4 TCACGTT 50 1.3478711E-9 39.600002 44 TTGTGCG 95 0.0 39.368423 1 CGCTGAA 95 0.0 39.368423 37 >>END_MODULE