##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545864_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4660251 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.435878882918537 31.0 31.0 33.0 30.0 34.0 2 31.840280705910477 31.0 31.0 34.0 30.0 34.0 3 31.90407684049636 31.0 31.0 34.0 30.0 34.0 4 35.680758611499684 37.0 35.0 37.0 33.0 37.0 5 35.605362457944864 37.0 35.0 37.0 33.0 37.0 6 35.657679382505364 37.0 35.0 37.0 33.0 37.0 7 35.979285879666136 37.0 35.0 37.0 35.0 37.0 8 35.96624366369966 37.0 35.0 37.0 35.0 37.0 9 37.74611303125089 39.0 38.0 39.0 35.0 39.0 10 37.1354450650834 39.0 37.0 39.0 33.0 39.0 11 36.89156721386895 39.0 37.0 39.0 32.0 39.0 12 36.55470681729375 39.0 35.0 39.0 32.0 39.0 13 36.39361828365039 39.0 35.0 39.0 32.0 39.0 14 37.474895236329544 40.0 36.0 41.0 32.0 41.0 15 37.562398677667794 40.0 36.0 41.0 32.0 41.0 16 37.640670212827594 40.0 35.0 41.0 33.0 41.0 17 37.557018280775004 40.0 35.0 41.0 32.0 41.0 18 37.421782217309755 39.0 36.0 41.0 32.0 41.0 19 37.298706657645695 39.0 36.0 41.0 32.0 41.0 20 37.13541416546018 39.0 35.0 41.0 32.0 41.0 21 37.023607955880486 39.0 35.0 41.0 32.0 41.0 22 36.945534264141564 39.0 35.0 41.0 32.0 41.0 23 36.83655751589346 38.0 35.0 41.0 31.0 41.0 24 36.89243755325625 38.0 35.0 41.0 32.0 41.0 25 36.88420645154091 38.0 35.0 41.0 32.0 41.0 26 36.656867194492314 38.0 35.0 41.0 31.0 41.0 27 36.62275615626712 38.0 35.0 41.0 31.0 41.0 28 36.592367449736074 38.0 35.0 41.0 31.0 41.0 29 36.52834557623613 38.0 35.0 41.0 31.0 41.0 30 36.396658892407295 38.0 35.0 41.0 30.0 41.0 31 36.222071085870695 38.0 35.0 41.0 30.0 41.0 32 36.02732814176747 38.0 35.0 41.0 30.0 41.0 33 35.75441644666779 38.0 35.0 41.0 28.0 41.0 34 35.45062508435704 38.0 35.0 41.0 26.0 41.0 35 35.19318058190428 38.0 34.0 41.0 24.0 41.0 36 35.029117744945495 38.0 34.0 40.0 24.0 41.0 37 34.958260831873645 38.0 34.0 40.0 23.0 41.0 38 34.86591687872606 38.0 34.0 40.0 23.0 41.0 39 34.757318650862366 38.0 34.0 40.0 23.0 41.0 40 34.66584546626351 38.0 34.0 40.0 23.0 41.0 41 34.60079446364584 38.0 34.0 40.0 23.0 41.0 42 34.5604753907032 38.0 34.0 40.0 23.0 41.0 43 34.4752806232969 38.0 34.0 40.0 22.0 41.0 44 34.35496800494222 38.0 34.0 40.0 22.0 41.0 45 34.2539852467174 37.0 33.0 40.0 22.0 41.0 46 34.19565083511596 37.0 33.0 40.0 22.0 41.0 47 34.13261817872041 37.0 33.0 40.0 22.0 41.0 48 34.0036961528467 37.0 33.0 40.0 20.0 41.0 49 33.939218939065725 37.0 33.0 40.0 20.0 41.0 50 33.81423404018367 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 15.0 12 14.0 13 17.0 14 31.0 15 97.0 16 290.0 17 791.0 18 1904.0 19 3797.0 20 6908.0 21 11229.0 22 17068.0 23 25702.0 24 38359.0 25 59287.0 26 87314.0 27 107555.0 28 110403.0 29 110032.0 30 117611.0 31 134880.0 32 161069.0 33 203339.0 34 322328.0 35 470392.0 36 327052.0 37 426171.0 38 679027.0 39 1237566.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.680031826611916 22.744912237559735 29.36775293862927 16.207302997199076 2 33.08647967673844 24.17547896025343 29.857211553626616 12.880829809381511 3 26.709999096615185 23.645250009066036 36.56815909701001 13.07659179730877 4 24.53251981491984 26.118357144282573 35.220806776287375 14.128316264510216 5 22.250561182219585 31.027062705420803 33.168728465483944 13.553647646875671 6 20.019307972896737 39.65543915982207 29.931413565492505 10.393839301788681 7 85.53447013905475 3.073976058371105 10.007615469638868 1.3839383329352861 8 86.65692041051007 2.265993827371101 9.673127048307055 1.4039587138117668 9 81.91389262080519 5.055049609988818 10.866067085227812 2.1649906839781807 10 35.47429097703107 36.016514990287 18.04297665512008 10.466217377561852 11 31.86371292018391 23.438201075435636 29.710202304553984 14.987883699826469 12 30.747721528303945 22.481557323843717 30.30044948222746 16.470271665624878 13 23.309624309935238 28.122626871385254 31.28104044181311 17.286708376866397 14 18.94494524007398 30.8163444415333 31.94029677800616 18.29841354038656 15 17.962852215470797 25.13109272440476 39.77712788431353 17.12892717581092 16 20.46593627682286 23.28082757774206 37.727989329330114 18.52524681610497 17 20.792227714773304 22.812419331061783 32.24776948709415 24.147583467070767 18 22.08765150203283 23.609436487433832 34.883442973350576 19.41946903718276 19 24.45046414881945 25.00914650305316 30.899730508077784 19.640658840049603 20 26.269679465762678 24.836280277607365 30.4282752152191 18.465765041410858 21 23.07021660421295 25.680312069028044 32.44430396560185 18.805167361157157 22 22.85962708875552 22.835594048475073 32.066963775127135 22.237815087642275 23 20.037547333823866 26.687146250277078 31.75472737412641 21.520579041772642 24 19.84204284275675 24.8363446518224 36.3382573170415 18.98335518837934 25 19.941522463060465 25.789297615085538 33.79152753789442 20.477652383959576 26 20.019350889040098 28.751670242654313 30.312294337794256 20.91668453051134 27 19.079058188067552 28.375531704193612 32.67358346149167 19.871826646247165 28 17.645895038700704 26.86140725038201 36.13972723786766 19.352970473049627 29 19.252804194452185 24.038662295228306 35.54083245730756 21.16770105301195 30 20.853769464348595 26.428125867040208 33.63001263236679 19.0880920362444 31 23.79725898883987 25.542250835845536 30.835806912546126 19.824683262768463 32 24.38703408893641 25.458435607867475 30.656224310664808 19.498305992531304 33 24.01615277803706 26.49861563250563 29.951906023945917 19.533325565511387 34 20.021003160559378 27.16815038503291 31.36165841711101 21.449188037296704 35 20.62723660163369 26.55805449105638 31.430045291551895 21.384663615758033 36 24.324634016493963 26.847695542579142 29.29745629580896 19.530214145117935 37 20.93979487370959 29.65956125539161 30.220990242800227 19.179653628098574 38 20.942841919888007 29.10418344419646 29.007107127920793 20.94586750799474 39 20.404630566036037 28.958805008571424 29.022256526526146 21.614307898866393 40 22.27468005478675 27.39564886097337 29.25243726142648 21.077233822813408 41 20.243029828221697 25.88489332441536 29.97495199292914 23.89712485443381 42 21.433158857752513 26.722208739400514 28.381797461123874 23.462834941723095 43 22.06724487586613 27.094441908815643 28.472886975401114 22.36542623991712 44 20.971252406790963 28.04127932165027 28.887907539744106 22.09956073181466 45 19.859788668035264 30.22882243896305 27.898390022339996 22.012998870661686 46 21.283059646358105 29.936391838122024 28.718260025050153 20.06228849046972 47 20.70699625406443 27.622031517186517 29.878197547728654 21.7927746810204 48 20.946468334001754 26.58934035956432 31.006741911540814 21.457449394893107 49 21.465238674912573 25.888541196600784 31.051996984711767 21.594223143774872 50 20.43621684754748 28.381797461123874 29.974758870284024 21.207226821044618 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1226.0 1 3607.5 2 5989.0 3 44557.0 4 83125.0 5 60497.0 6 37869.0 7 37294.0 8 36719.0 9 36645.0 10 36571.0 11 35661.5 12 34752.0 13 33449.5 14 32147.0 15 30288.0 16 28429.0 17 26503.5 18 24578.0 19 23535.0 20 22492.0 21 23008.0 22 23524.0 23 24930.5 24 26337.0 25 30993.5 26 35650.0 27 43963.5 28 52277.0 29 63678.0 30 75079.0 31 88686.0 32 102293.0 33 115784.0 34 129275.0 35 145551.0 36 161827.0 37 173719.0 38 185611.0 39 205350.5 40 225090.0 41 263697.5 42 302305.0 43 339825.5 44 377346.0 45 389119.5 46 400893.0 47 395224.0 48 389555.0 49 382572.0 50 375589.0 51 347003.0 52 318417.0 53 296868.0 54 275319.0 55 253579.0 56 231839.0 57 204268.0 58 176697.0 59 160343.5 60 143990.0 61 126385.5 62 108781.0 63 93191.0 64 77601.0 65 61812.0 66 46023.0 67 37349.0 68 28675.0 69 23131.0 70 17587.0 71 14982.0 72 12377.0 73 9750.0 74 7123.0 75 5662.0 76 4201.0 77 3388.0 78 2575.0 79 1956.0 80 1337.0 81 1000.5 82 664.0 83 473.0 84 282.0 85 195.5 86 109.0 87 82.5 88 56.0 89 39.0 90 22.0 91 15.5 92 9.0 93 9.0 94 9.0 95 8.5 96 8.0 97 5.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4660251.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.594138275324383 #Duplication Level Percentage of deduplicated Percentage of total 1 79.08769383117009 13.914798211421259 2 8.400971332839925 2.956157025540436 3 2.872360122122736 1.5161010349546513 4 1.4269953220503142 1.0042701205757711 5 0.8494412007383894 0.7472592971274399 6 0.5697597208658317 0.60146587875742 7 0.42414017517813485 0.5223666623143088 8 0.33931527112667165 0.4775967839305475 9 0.27382756646392686 0.4335984061165716 >10 3.0906917814196566 12.901909602996803 >50 1.1955642750190314 15.200088303248597 >100 1.4607846067573351 47.58647566275641 >500 0.007211442152817389 0.8106481369200403 >1k 9.946816762506734E-4 0.25073937300314364 >5k 1.2433520953133417E-4 0.14612973404824633 >10k+ 1.2433520953133417E-4 0.930395766288318 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 42531 0.9126332465783495 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6680 0.1433399188155316 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03495519876504506 0.0 2 0.0 0.0 0.0 0.13263234104772467 0.0 3 0.0 0.0 0.0 0.18977518592882658 0.0 4 0.0 0.0 0.0 0.2761224663650091 0.0 5 0.0 0.0 0.0 0.48104705089918975 0.0 6 0.0 0.0 0.0 0.670307243107721 0.0 7 0.0 0.0 0.0 0.7972531951605182 0.0 8 0.0 0.0 0.0 1.1281581185219423 0.0 9 0.0 0.0 0.0 1.257786329534611 0.0 10 0.0 0.0 0.0 1.4970438287551464 0.0 11 0.0 0.0 0.0 1.7420950073290045 0.0 12 0.0 0.0 0.0 1.9497876831097725 0.0 13 0.0 0.0 0.0 2.026993825010713 0.0 14 0.0 0.0 0.0 2.0574642867948527 0.0 15 0.0 0.0 0.0 2.109156781469496 0.0 16 0.0 0.0 0.0 2.232583609766942 0.0 17 0.0 0.0 0.0 2.3821678274410543 0.0 18 0.0 0.0 0.0 2.582478926564256 0.0 19 0.0 0.0 0.0 2.6848553865446303 0.0 20 0.0 0.0 0.0 2.7980896307945646 0.0 21 0.0 0.0 0.0 2.9534246116786416 0.0 22 0.0 0.0 0.0 3.1273637407083865 0.0 23 0.0 0.0 0.0 3.3048863677085203 0.0 24 0.0 0.0 0.0 3.4471104667967456 0.0 25 0.0 0.0 0.0 3.57015104980397 0.0 26 0.0 0.0 0.0 3.6898656317009535 0.0 27 0.0 0.0 0.0 3.815845970528197 0.0 28 0.0 0.0 0.0 3.9523193064064577 0.0 29 0.0 0.0 0.0 4.102397059729186 0.0 30 0.0 0.0 0.0 4.2765078533323635 0.0 31 0.0 0.0 0.0 4.44164917297373 0.0 32 0.0 0.0 0.0 4.595181675836773 0.0 33 0.0 0.0 0.0 4.7463752488868085 0.0 34 0.0 0.0 0.0 4.913276130405851 0.0 35 0.0 0.0 0.0 5.1073858468138305 0.0 36 0.0 0.0 0.0 5.278363761951877 0.0 37 0.0 0.0 0.0 5.459577177280795 0.0 38 0.0 0.0 0.0 5.648236543482315 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 33060 0.0 43.094982 1 ACGGTCT 995 0.0 39.135677 30 TCGATAG 265 0.0 39.018867 1 CGACGGT 1015 0.0 38.798027 28 GCGATCT 305 0.0 38.229507 9 TTACGTA 75 0.0 38.13333 23 AGGGCGA 4060 0.0 38.093594 6 GACGGTC 1045 0.0 37.894737 29 TATCGCG 180 0.0 37.88889 1 CAATTCG 35 7.294999E-6 37.714287 1 CGGGTAT 495 0.0 37.333332 6 GTTTTTT 39950 0.0 37.198997 2 TACGGGA 2430 0.0 37.119343 4 TTAGCGG 1325 0.0 37.026413 2 GGGCGAT 7235 0.0 36.88459 7 TAGGGCG 1765 0.0 36.770535 5 CGGTCTA 1080 0.0 36.666664 31 CGCCGAT 30 1.3017058E-4 36.666664 41 GACCGAT 1545 0.0 36.595467 9 TAGGGAC 5270 0.0 36.485767 5 >>END_MODULE